Rroxscaffold_6G00423360

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000160
Physical Location & Seq
Forward (+)
44481690 .. 44482317
628 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00423360.1

Sequence Viewer

Length: 588 bp
ATGTTACAACCATGGGTATTGTACTTTGATGGTTCCCGAACGTATACCATGGTCGGAGTAGGAATTGCACCGGAGAATCCGCGGAGATCACTTTTCGTACTCATTCCAATTGGAGTTTCAATATACCAACAACTAGGTGAATATGAGGCCTTAATCATAGGCCTAGAAGTACTGCTAGAAATGGGAATCAAAGATTTGCGCAAAGAGTCCGGATGCATTAGCTTCACGTTGGTCCCTTATTTGAACAGGACATTAGAACTGTTGAACCGGTTTGATGACGTGGATCTTGAGCACATTCCTCACGAAAGAAATTTCACCGGTTACGAGTTGGCCCACCGGGCAACGGGGATAACATTAAGATATGGCATGCGCGAGAGAATCCTTAAAGTCAAGCGTCGCACGCTTCCTTCATGGATGACGAGAAGAGATCCTCCATACGATACCTCGGTCACGACCTTGGAATCCATTGACGTGGATTGGCGCATCCCTTTGATCAATTATCTCAAGCATCCCGATCAATCCACGGATAGAAGGATTCGCTATCTTGCCCTCAACTACTTCCTTAGAGGTGATGAACTTCGCAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

195

Amino Acids

22.95

Weight (kDa)

8.66

Isoelectric Point (pI)

38.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000160)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11612 FvH4_2g25851 FvH4_3g22802 FvH4_3g22805 FvH4_3g31361 FvH4_3g31382 FvH4_4g05272 FvH4_4g05273 FvH4_4g14567 FvH4_4g15161 FvH4_5g22540 FvH4_6g13113 FvH4_6g31923 FvH4_6g31924 FvH4_6g33651 FvH4_6g45122 FvH4_7g03662
pyrus_communis pycom01g04240 pycom01g24010 pycom02g18210 pycom02g19420 pycom05g06510 pycom09g15750 pycom09g18940 pycom12g02580 pycom12g03100 pycom12g08310 pycom13g22710 pycom13g28060 pycom16g18340 pycom16g18350 pycom16g24880 pycom16g26240 pycom461g00260 pycom520g00980 pycom520g01320
rosa_chinensis RchiOBHm_Chr1g0320731 RchiOBHm_Chr2g0102771 RchiOBHm_Chr3g0462151 RchiOBHm_Chr5g0038141 RchiOBHm_Chr5g0069371 RchiOBHm_Chr7g0239101
rosa_multiflora Rmu_co8038252.1_g000001 Rmu_co8138412.1_g000001 Rmu_co8331087.1_g000001 Rmu_co8479311.1_g000001 Rmu_sc0000112.1_g000018 Rmu_sc0000346.1_g000012 Rmu_sc0002102.1_g000002 Rmu_sc0003505.1_g000013 Rmu_sc0004249.1_g000007 Rmu_sc0004448.1_g000010 Rmu_sc0004594.1_g000011 Rmu_sc0004915.1_g000010 Rmu_sc0008019.1_g000019 Rmu_sc0008303.1_g000001 Rmu_sc0008355.1_g000005 Rmu_sc0009253.1_g000018 Rmu_sc0010211.1_g000002 Rmu_sc0010252.1_g000009 Rmu_sc0011534.1_g000008 Rmu_sc0014811.1_g000009 Rmu_sc0019475.1_g000001 Rmu_sc0024897.1_g000001 Rmu_sc0024898.1_g000001 Rmu_sc0031791.1_g000001 Rmu_sc0038715.1_g000001
rosa_roxburghii Rroxscaffold_165G00436940 Rroxscaffold_174G00435270 Rroxscaffold_177G00434330 Rroxscaffold_177G00434340 Rroxscaffold_177G00434350 Rroxscaffold_1G00002160 Rroxscaffold_1G00025260 Rroxscaffold_1G00042950 Rroxscaffold_1G00068010 Rroxscaffold_2G00107530 Rroxscaffold_3G00221190 Rroxscaffold_3G00221520 Rroxscaffold_3G00223200 Rroxscaffold_4G00322230 Rroxscaffold_4G00331810 Rroxscaffold_5G00385150 Rroxscaffold_5G00387510 Rroxscaffold_6G00410520 Rroxscaffold_6G00423360 Rroxscaffold_6G00423370 Rroxscaffold_6G00429210 Rroxscaffold_7G00158300 Rroxscaffold_7G00163480 Rroxscaffold_7G00171410 Rroxscaffold_7G00178940 Rroxscaffold_7G00199480 Rroxscaffold_7G00205630 Rroxscaffold_7G00207440
rosa_rugosa Rorug01G0056400 Rorug04G0063900 Rorug05G0251400 Rorug07G0221900
rosa_samantha Rh1DG169400 Rh2AG292900 Rh2DG519200 Rh4DG260600 Rh5AG042600 Rh6BG117500
rosa_wichuraiana Rw0G001900 Rw0G005150 Rw0G006380 Rw0G015140 Rw0G016320 Rw0G019440 Rw0G019840 Rw0G023740 Rw1G001590 Rw1G002180 Rw1G003560 Rw1G004280 Rw1G006110 Rw1G006680 Rw1G007920 Rw1G008480 Rw1G009120 Rw1G010310 Rw1G014900 Rw1G019650 Rw1G022070 Rw1G022170 Rw1G041570 Rw2G002740 Rw2G005760 Rw2G032370 Rw2G046770 Rw2G050600 Rw2G051420 Rw3G015930 Rw3G016280 Rw3G019580 Rw3G028420 Rw4G003430 Rw4G005350 Rw4G007530 Rw4G008150 Rw4G009580 Rw4G010250 Rw4G015800 Rw4G017000 Rw4G017910 Rw4G018510 Rw4G019700 Rw4G031010 Rw5G012650 Rw5G020140 Rw5G022060 Rw5G034420 Rw5G035560 Rw5G043010 Rw5G046750 Rw5G047340 Rw5G049500 Rw6G001390 Rw6G002210 Rw6G004530 Rw6G004770 Rw6G005100 Rw6G005890 Rw6G011860 Rw6G014680 Rw6G019480 Rw6G028970 Rw6G033800 Rw7G013050 Rw7G014800 Rw7G025760 Rw7G025850 Rw7G026730 Rw7G026870 Rw7G036330 Rw7G036430 Rw7G039320 Rw7G039510 Rw7G039560 Rw7G041370 Rw7G042050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 200
AccI GTMKAC 1 cut(s) 44
AccII CGCG 2 cut(s) 82, 372
AccIII TCCGGA 1 cut(s) 209
AciI CCGC 2 cut(s) 80, 82
AclWI GGATC 2 cut(s) 291, 422
AcsI RAATTY 1 cut(s) 310
AfaI GTAC 3 cut(s) 23, 99, 171
AfiI CCNNNNNNNGG 1 cut(s) 343
AgeI ACCGGT 2 cut(s) 267, 317
AgsI TTSAA 3 cut(s) 120, 244, 265
AjiI CACGTC 2 cut(s) 280, 472
AjuI GAANNNNNNNTTGG 2 cut(s) 100, 132
AluBI AGCT 1 cut(s) 222
AluI AGCT 1 cut(s) 222
Alw21I GWGCWC 1 cut(s) 294
AlwI GGATC 2 cut(s) 291, 422
Aor13HI TCCGGA 1 cut(s) 209
AoxI GGCC 3 cut(s) 147, 160, 330
ApoI RAATTY 1 cut(s) 310
AsiGI ACCGGT 2 cut(s) 267, 317
AspLEI GCGC 3 cut(s) 201, 372, 483
AspS9I GGNCC 2 cut(s) 232, 331
AsuC2I CCSGG 1 cut(s) 338
AsuHPI GGTGA 3 cut(s) 149, 307, 581
AvaII GGWCC 1 cut(s) 232
BaeI ACNNNNGTAYC 2 cut(s) 432, 465
Bbv12I GWGCWC 1 cut(s) 294
BccI CCATC 1 cut(s) 23
BclI TGATCA 1 cut(s) 492
BcnI CCSGG 1 cut(s) 338
BfaI CTAG 3 cut(s) 134, 164, 176
BglI GCCNNNNNGGC 1 cut(s) 338
BmcAI AGTACT 1 cut(s) 171
Bme1390I CCNGG 1 cut(s) 338
Bme18I GGWCC 1 cut(s) 232
BmgBI CACGTC 2 cut(s) 280, 472
BmgT120I GGNCC 2 cut(s) 232, 331
BmiI GGNNCC 2 cut(s) 34, 234
BmrFI CCNGG 1 cut(s) 338
BmsI GCATC 3 cut(s) 203, 492, 517
BpuEI CTTGAG 2 cut(s) 308, 488
BpuMI CCSGG 1 cut(s) 338
BsaJI CCNNGG 6 cut(s) 11, 48, 80, 444, 456, 522
BsaWI WCCGGW 4 cut(s) 70, 209, 267, 317
Bsc4I CCNNNNNNNGG 1 cut(s) 343
Bse118I RCCGGY 2 cut(s) 267, 317
BseAI TCCGGA 1 cut(s) 209
BseDI CCNNGG 6 cut(s) 11, 48, 80, 444, 456, 522
BseGI GGATG 4 cut(s) 218, 420, 483, 508
BseLI CCNNNNNNNGG 1 cut(s) 343
Bsh1236I CGCG 2 cut(s) 82, 372
BshFI GGCC 3 cut(s) 149, 162, 332
BshTI ACCGGT 2 cut(s) 267, 317
BsiHKAI GWGCWC 1 cut(s) 294
BsiSI CCGG 5 cut(s) 71, 210, 268, 318, 337
BslFI GGGAC 1 cut(s) 218
BslI CCNNNNNNNGG 1 cut(s) 343
BsmFI GGGAC 1 cut(s) 218
BsnI GGCC 3 cut(s) 149, 162, 332
Bsp1286I GDGCHC 1 cut(s) 294
Bsp13I TCCGGA 1 cut(s) 209
Bsp143I GATC 5 cut(s) 86, 283, 427, 492, 514
Bsp19I CCATGG 2 cut(s) 11, 48
BspACI CCGC 2 cut(s) 80, 82
BspANI GGCC 3 cut(s) 149, 162, 332
BspEI TCCGGA 1 cut(s) 209
BspFNI CGCG 2 cut(s) 82, 372
BspLI GGNNCC 2 cut(s) 34, 234
BspPI GGATC 2 cut(s) 291, 422
BsrFI RCCGGY 2 cut(s) 267, 317
BssAI RCCGGY 2 cut(s) 267, 317
BssECI CCNNGG 6 cut(s) 11, 48, 80, 444, 456, 522
BssMI GATC 5 cut(s) 86, 283, 427, 492, 514
BssNAI GTATAC 1 cut(s) 45
BssT1I CCWWGG 3 cut(s) 11, 48, 456
Bst1107I GTATAC 1 cut(s) 45
Bst4CI ACNGT 1 cut(s) 261
Bst6I CTCTTC 1 cut(s) 418
BstC8I GCNNGC 2 cut(s) 368, 401
BstDEI CTNAG 1 cut(s) 563
BstDSI CCRYGG 4 cut(s) 11, 48, 80, 522
BstF5I GGATG 4 cut(s) 218, 420, 483, 508
BstFNI CGCG 2 cut(s) 82, 372
BstHHI GCGC 3 cut(s) 201, 372, 483
BstKTI GATC 5 cut(s) 89, 286, 430, 495, 517
BstMBI GATC 5 cut(s) 86, 283, 427, 492, 514
BstMWI GCNNNNNNNGC 2 cut(s) 338, 400
BstNSI RCATGY 1 cut(s) 370
BstSCI CCNGG 1 cut(s) 336
BstUI CGCG 2 cut(s) 82, 372
BstX2I RGATCY 2 cut(s) 283, 427
BstXI CCANNNNNNTGG 1 cut(s) 472
BstYI RGATCY 2 cut(s) 283, 427
BstZ17I GTATAC 1 cut(s) 45
BsuRI GGCC 3 cut(s) 149, 162, 332
BtgI CCRYGG 4 cut(s) 11, 48, 80, 522
BtrI CACGTC 2 cut(s) 280, 472
BtsCI GGATG 4 cut(s) 218, 420, 483, 508
Cac8I GCNNGC 2 cut(s) 368, 401
CfoI GCGC 3 cut(s) 201, 372, 483
Cfr10I RCCGGY 2 cut(s) 267, 317
Cfr13I GGNCC 2 cut(s) 232, 331
Cfr42I CCGCGG 1 cut(s) 83
CseI GACGC 1 cut(s) 383
Csp6I GTAC 3 cut(s) 22, 98, 170
CspAI ACCGGT 2 cut(s) 267, 317
CviAII CATG 4 cut(s) 12, 49, 367, 411
CviJI RGCY 4 cut(s) 149, 162, 222, 332
CviKI_1 RGCY 4 cut(s) 149, 162, 222, 332
CviQI GTAC 3 cut(s) 22, 98, 170
DdeI CTNAG 1 cut(s) 563
DpnI GATC 5 cut(s) 88, 285, 429, 494, 516
DpnII GATC 5 cut(s) 86, 283, 427, 492, 514
Eam1104I CTCTTC 1 cut(s) 418
EarI CTCTTC 1 cut(s) 418
Eco130I CCWWGG 3 cut(s) 11, 48, 456
Eco147I AGGCCT 2 cut(s) 149, 162
Eco47I GGWCC 1 cut(s) 232
EcoT14I CCWWGG 3 cut(s) 11, 48, 456
EcoT22I ATGCAT 1 cut(s) 218
ErhI CCWWGG 3 cut(s) 11, 48, 456
FaeI CATG 4 cut(s) 15, 52, 370, 414
FaqI GGGAC 1 cut(s) 218
FatI CATG 4 cut(s) 11, 48, 366, 410
FbaI TGATCA 1 cut(s) 492
FblI GTMKAC 1 cut(s) 44
FokI GGATG 4 cut(s) 225, 427, 470, 495
FspBI CTAG 3 cut(s) 134, 164, 176
FspI TGCGCA 1 cut(s) 200
GlaI GCGC 3 cut(s) 200, 371, 482
HaeIII GGCC 3 cut(s) 149, 162, 332
HapII CCGG 5 cut(s) 71, 210, 268, 318, 337
HgaI GACGC 1 cut(s) 383
HhaI GCGC 3 cut(s) 201, 372, 483
Hin1II CATG 4 cut(s) 15, 52, 370, 414
Hin6I GCGC 3 cut(s) 199, 370, 481
HinP1I GCGC 3 cut(s) 199, 370, 481
HinfI GANTC 6 cut(s) 76, 186, 206, 378, 461, 535
HpaII CCGG 5 cut(s) 71, 210, 268, 318, 337
HphI GGTGA 3 cut(s) 149, 307, 581
Hpy166II GTNNAC 1 cut(s) 45
Hpy188I TCNGA 1 cut(s) 56
Hpy188III TCNNGA 6 cut(s) 36, 210, 287, 302, 451, 512
Hpy8I GTNNAC 1 cut(s) 45
Hpy99I CGWCG 1 cut(s) 399
HpyAV CCTTC 2 cut(s) 417, 525
HpyCH4III ACNGT 1 cut(s) 261
HpyCH4IV ACGT 4 cut(s) 41, 227, 279, 471
HpyCH4V TGCA 2 cut(s) 68, 216
HpyF10VI GCNNNNNNNGC 2 cut(s) 338, 400
HpyF3I CTNAG 1 cut(s) 563
HpySE526I ACGT 4 cut(s) 41, 227, 279, 471
Hsp92II CATG 4 cut(s) 15, 52, 370, 414
HspAI GCGC 3 cut(s) 199, 370, 481
Kpn2I TCCGGA 1 cut(s) 209
Ksp22I TGATCA 1 cut(s) 492
KspI CCGCGG 1 cut(s) 83
Kzo9I GATC 5 cut(s) 86, 283, 427, 492, 514
LpnPI CCDG 6 cut(s) 84, 223, 232, 281, 331, 350
LweI GCATC 3 cut(s) 203, 492, 517
MaeI CTAG 3 cut(s) 134, 164, 176
MaeII ACGT 4 cut(s) 41, 227, 279, 471
MaeIII GTNAC 3 cut(s) 3, 320, 448
MalI GATC 5 cut(s) 88, 285, 429, 494, 516
MboI GATC 5 cut(s) 86, 283, 427, 492, 514
MboII GAAGA 1 cut(s) 435
MfeI CAATTG 1 cut(s) 108
MflI RGATCY 2 cut(s) 283, 427
MhlI GDGCHC 1 cut(s) 294
MluCI AATT 4 cut(s) 63, 108, 310, 496
MlyI GAGTC 1 cut(s) 215
MmeI TCCRAC 1 cut(s) 34
MnlI CCTC 6 cut(s) 139, 309, 441, 454, 560, 560
Mph1103I ATGCAT 1 cut(s) 218
MroI TCCGGA 1 cut(s) 209
MseI TTAA 3 cut(s) 152, 356, 384
MslI CAYNNNNRTG 1 cut(s) 470
MspA1I CMGCKG 1 cut(s) 82
MspI CCGG 5 cut(s) 71, 210, 268, 318, 337
MspR9I CCNGG 1 cut(s) 338
MunI CAATTG 1 cut(s) 108
MvnI CGCG 2 cut(s) 82, 372
MwoI GCNNNNNNNGC 2 cut(s) 338, 400
NciI CCSGG 1 cut(s) 338
NcoI CCATGG 2 cut(s) 11, 48
NdeII GATC 5 cut(s) 86, 283, 427, 492, 514
NlaIII CATG 4 cut(s) 15, 52, 370, 414
NlaIV GGNNCC 2 cut(s) 34, 234
NmuCI GTSAC 1 cut(s) 448
NsbI TGCGCA 1 cut(s) 200
NsiI ATGCAT 1 cut(s) 218
NspI RCATGY 1 cut(s) 370
PaeI GCATGC 1 cut(s) 370
PceI AGGCCT 2 cut(s) 149, 162
PfeI GAWTC 5 cut(s) 76, 186, 378, 461, 535
PinAI ACCGGT 2 cut(s) 267, 317
PleI GAGTC 1 cut(s) 214
PpsI GAGTC 1 cut(s) 214
PspN4I GGNNCC 2 cut(s) 34, 234
PspPI GGNCC 2 cut(s) 232, 331
PsuI RGATCY 2 cut(s) 283, 427
RsaI GTAC 3 cut(s) 23, 99, 171
RsaNI GTAC 3 cut(s) 22, 98, 170
RseI CAYNNNNRTG 1 cut(s) 470
SacII CCGCGG 1 cut(s) 83
SaqAI TTAA 3 cut(s) 152, 356, 384
Sau3AI GATC 5 cut(s) 86, 283, 427, 492, 514
Sau96I GGNCC 2 cut(s) 232, 331
ScaI AGTACT 1 cut(s) 171
SchI GAGTC 1 cut(s) 215
ScrFI CCNGG 1 cut(s) 338
SduI GDGCHC 1 cut(s) 294
SetI ASST 9 cut(s) 44, 139, 224, 230, 282, 446, 458, 474, 571
SfaNI GCATC 3 cut(s) 203, 492, 517
Sfr303I CCGCGG 1 cut(s) 83
SgrBI CCGCGG 1 cut(s) 83
SinI GGWCC 1 cut(s) 232
SmiMI CAYNNNNRTG 1 cut(s) 470
SmlI CTYRAG 2 cut(s) 287, 503
SmoI CTYRAG 2 cut(s) 287, 503
SphI GCATGC 1 cut(s) 370
Sse9I AATT 4 cut(s) 63, 108, 310, 496
SseBI AGGCCT 2 cut(s) 149, 162
SsiI CCGC 2 cut(s) 80, 82
SspMI CTAG 3 cut(s) 134, 164, 176
StuI AGGCCT 2 cut(s) 149, 162
StyD4I CCNGG 1 cut(s) 336
StyI CCWWGG 3 cut(s) 11, 48, 456
TaaI ACNGT 1 cut(s) 261
TaiI ACGT 4 cut(s) 44, 230, 282, 474
TaqII GACCGA 1 cut(s) 436
TasI AATT 4 cut(s) 63, 108, 310, 496
TatI WGTACW 2 cut(s) 21, 169
TfiI GAWTC 5 cut(s) 76, 186, 378, 461, 535
Tru1I TTAA 3 cut(s) 152, 356, 384
Tru9I TTAA 3 cut(s) 152, 356, 384
TseFI GTSAC 1 cut(s) 448
Tsp45I GTSAC 1 cut(s) 448
TspDTI ATGAA 2 cut(s) 399, 588
TspGWI ACGGA 1 cut(s) 539
VpaK11BI GGWCC 1 cut(s) 232
XapI RAATTY 1 cut(s) 310
XceI RCATGY 1 cut(s) 370
XmiI GTMKAC 1 cut(s) 44
XspI CTAG 3 cut(s) 134, 164, 176
ZrmI AGTACT 1 cut(s) 171
Zsp2I ATGCAT 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.