FvH4_2g25851

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000160
Physical Location & Seq
Reverse (-)
20866868 .. 20867095
228 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g25851.t1

Sequence Viewer

Length: 228 bp
ATGTACGGTCATGATGCCGTCCTTCCCCTCGAGATCAATATAGCTTCGCTCCGCGTTCAGGAACAACATCAACTACTTAGCGAAGATTACGTCCAAGCTATGTGGCAGGAGCTTGAAGATCTCGACGAACACCGAGTCACCGCTTTCAACAATCTCATCCTCGAGAAACAAAGCATCGCGCGGTCGTACGATAAAGTCACGCGAGGACGGAGCTATGCTGAGGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

76

Amino Acids

8.73

Weight (kDa)

4.81

Isoelectric Point (pI)

63.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000160)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11612 FvH4_2g25851 FvH4_3g22802 FvH4_3g22805 FvH4_3g31361 FvH4_3g31382 FvH4_4g05272 FvH4_4g05273 FvH4_4g14567 FvH4_4g15161 FvH4_5g22540 FvH4_6g13113 FvH4_6g31923 FvH4_6g31924 FvH4_6g33651 FvH4_6g45122 FvH4_7g03662
pyrus_communis pycom01g04240 pycom01g24010 pycom02g18210 pycom02g19420 pycom05g06510 pycom09g15750 pycom09g18940 pycom12g02580 pycom12g03100 pycom12g08310 pycom13g22710 pycom13g28060 pycom16g18340 pycom16g18350 pycom16g24880 pycom16g26240 pycom461g00260 pycom520g00980 pycom520g01320
rosa_chinensis RchiOBHm_Chr1g0320731 RchiOBHm_Chr2g0102771 RchiOBHm_Chr3g0462151 RchiOBHm_Chr5g0038141 RchiOBHm_Chr5g0069371 RchiOBHm_Chr7g0239101
rosa_multiflora Rmu_co8038252.1_g000001 Rmu_co8138412.1_g000001 Rmu_co8331087.1_g000001 Rmu_co8479311.1_g000001 Rmu_sc0000112.1_g000018 Rmu_sc0000346.1_g000012 Rmu_sc0002102.1_g000002 Rmu_sc0003505.1_g000013 Rmu_sc0004249.1_g000007 Rmu_sc0004448.1_g000010 Rmu_sc0004594.1_g000011 Rmu_sc0004915.1_g000010 Rmu_sc0008019.1_g000019 Rmu_sc0008303.1_g000001 Rmu_sc0008355.1_g000005 Rmu_sc0009253.1_g000018 Rmu_sc0010211.1_g000002 Rmu_sc0010252.1_g000009 Rmu_sc0011534.1_g000008 Rmu_sc0014811.1_g000009 Rmu_sc0019475.1_g000001 Rmu_sc0024897.1_g000001 Rmu_sc0024898.1_g000001 Rmu_sc0031791.1_g000001 Rmu_sc0038715.1_g000001
rosa_roxburghii Rroxscaffold_165G00436940 Rroxscaffold_174G00435270 Rroxscaffold_177G00434330 Rroxscaffold_177G00434340 Rroxscaffold_177G00434350 Rroxscaffold_1G00002160 Rroxscaffold_1G00025260 Rroxscaffold_1G00042950 Rroxscaffold_1G00068010 Rroxscaffold_2G00107530 Rroxscaffold_3G00221190 Rroxscaffold_3G00221520 Rroxscaffold_3G00223200 Rroxscaffold_4G00322230 Rroxscaffold_4G00331810 Rroxscaffold_5G00385150 Rroxscaffold_5G00387510 Rroxscaffold_6G00410520 Rroxscaffold_6G00423360 Rroxscaffold_6G00423370 Rroxscaffold_6G00429210 Rroxscaffold_7G00158300 Rroxscaffold_7G00163480 Rroxscaffold_7G00171410 Rroxscaffold_7G00178940 Rroxscaffold_7G00199480 Rroxscaffold_7G00205630 Rroxscaffold_7G00207440
rosa_rugosa Rorug01G0056400 Rorug04G0063900 Rorug05G0251400 Rorug07G0221900
rosa_samantha Rh1DG169400 Rh2AG292900 Rh2DG519200 Rh4DG260600 Rh5AG042600 Rh6BG117500
rosa_wichuraiana Rw0G001900 Rw0G005150 Rw0G006380 Rw0G015140 Rw0G016320 Rw0G019440 Rw0G019840 Rw0G023740 Rw1G001590 Rw1G002180 Rw1G003560 Rw1G004280 Rw1G006110 Rw1G006680 Rw1G007920 Rw1G008480 Rw1G009120 Rw1G010310 Rw1G014900 Rw1G019650 Rw1G022070 Rw1G022170 Rw1G041570 Rw2G002740 Rw2G005760 Rw2G032370 Rw2G046770 Rw2G050600 Rw2G051420 Rw3G015930 Rw3G016280 Rw3G019580 Rw3G028420 Rw4G003430 Rw4G005350 Rw4G007530 Rw4G008150 Rw4G009580 Rw4G010250 Rw4G015800 Rw4G017000 Rw4G017910 Rw4G018510 Rw4G019700 Rw4G031010 Rw5G012650 Rw5G020140 Rw5G022060 Rw5G034420 Rw5G035560 Rw5G043010 Rw5G046750 Rw5G047340 Rw5G049500 Rw6G001390 Rw6G002210 Rw6G004530 Rw6G004770 Rw6G005100 Rw6G005890 Rw6G011860 Rw6G014680 Rw6G019480 Rw6G028970 Rw6G033800 Rw7G013050 Rw7G014800 Rw7G025760 Rw7G025850 Rw7G026730 Rw7G026870 Rw7G036330 Rw7G036430 Rw7G039320 Rw7G039510 Rw7G039560 Rw7G041370 Rw7G042050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 4 cut(s) 54, 179, 181, 202
AciI CCGC 3 cut(s) 52, 141, 181
AfaI GTAC 2 cut(s) 5, 188
AfiI CCNNNNNNNGG 1 cut(s) 58
AgsI TTSAA 2 cut(s) 116, 148
AluBI AGCT 4 cut(s) 44, 98, 112, 213
AluI AGCT 4 cut(s) 44, 98, 112, 213
Ama87I CYCGRG 2 cut(s) 29, 161
ArsI GACNNNNNNTTYG 4 cut(s) 75, 107, 120, 152
AspLEI GCGC 1 cut(s) 181
AsuHPI GGTGA 1 cut(s) 130
AvaI CYCGRG 2 cut(s) 29, 161
BbvCI CCTCAGC 1 cut(s) 219
BceAI ACGGC 1 cut(s) 2
BfaI CTAG 1 cut(s) 226
BglII AGATCT 1 cut(s) 118
BmeT110I CYCGRG 2 cut(s) 29, 161
BmsI GCATC 2 cut(s) 4, 183
Bpu10I CCTNAGC 1 cut(s) 219
Bsc4I CCNNNNNNNGG 1 cut(s) 58
BseGI GGATG 1 cut(s) 156
BseLI CCNNNNNNNGG 1 cut(s) 58
BseMII CTCAG 1 cut(s) 210
Bsh1236I CGCG 4 cut(s) 54, 179, 181, 202
Bsh1285I CGRYCG 1 cut(s) 185
BsiEI CGRYCG 1 cut(s) 185
BsiHKCI CYCGRG 2 cut(s) 29, 161
BsiWI CGTACG 1 cut(s) 186
BslI CCNNNNNNNGG 1 cut(s) 58
BsoBI CYCGRG 2 cut(s) 29, 161
Bsp143I GATC 2 cut(s) 33, 118
BspACI CCGC 3 cut(s) 52, 141, 181
BspCNI CTCAG 1 cut(s) 211
BspFNI CGCG 4 cut(s) 54, 179, 181, 202
BspHI TCATGA 1 cut(s) 10
BssMI GATC 2 cut(s) 33, 118
Bst4CI ACNGT 1 cut(s) 8
BstDEI CTNAG 2 cut(s) 77, 219
BstF5I GGATG 1 cut(s) 156
BstFNI CGCG 4 cut(s) 54, 179, 181, 202
BstHHI GCGC 1 cut(s) 181
BstKTI GATC 2 cut(s) 36, 121
BstMBI GATC 2 cut(s) 33, 118
BstMCI CGRYCG 1 cut(s) 185
BstUI CGCG 4 cut(s) 54, 179, 181, 202
BstX2I RGATCY 1 cut(s) 118
BstYI RGATCY 1 cut(s) 118
BtgZI GCGATG 1 cut(s) 160
BtsCI GGATG 1 cut(s) 156
CciI TCATGA 1 cut(s) 10
CfoI GCGC 1 cut(s) 181
Csp6I GTAC 2 cut(s) 4, 187
CspCI CAANNNNNGTGG 2 cut(s) 83, 118
CviAII CATG 1 cut(s) 11
CviJI RGCY 5 cut(s) 44, 98, 112, 213, 225
CviKI_1 RGCY 5 cut(s) 44, 98, 112, 213, 225
CviQI GTAC 2 cut(s) 4, 187
DdeI CTNAG 2 cut(s) 77, 219
DpnI GATC 2 cut(s) 35, 120
DpnII GATC 2 cut(s) 33, 118
Eco88I CYCGRG 2 cut(s) 29, 161
FaeI CATG 1 cut(s) 14
FaiI YATR 4 cut(s) 12, 41, 101, 216
FatI CATG 1 cut(s) 10
FokI GGATG 1 cut(s) 143
FspBI CTAG 1 cut(s) 226
GlaI GCGC 1 cut(s) 180
HhaI GCGC 1 cut(s) 181
Hin1II CATG 1 cut(s) 14
Hin6I GCGC 1 cut(s) 179
HinP1I GCGC 1 cut(s) 179
HinfI GANTC 1 cut(s) 135
HphI GGTGA 1 cut(s) 130
Hpy188III TCNNGA 5 cut(s) 11, 31, 59, 122, 163
Hpy99I CGWCG 1 cut(s) 128
HpyAV CCTTC 1 cut(s) 32
HpyCH4III ACNGT 1 cut(s) 8
HpyCH4IV ACGT 1 cut(s) 90
HpyF3I CTNAG 2 cut(s) 77, 219
HpySE526I ACGT 1 cut(s) 90
Hsp92II CATG 1 cut(s) 14
HspAI GCGC 1 cut(s) 179
Kzo9I GATC 2 cut(s) 33, 118
LmnI GCTCC 3 cut(s) 54, 109, 210
LpnPI CCDG 2 cut(s) 44, 92
LweI GCATC 2 cut(s) 4, 183
MaeI CTAG 1 cut(s) 226
MaeII ACGT 1 cut(s) 90
MaeIII GTNAC 2 cut(s) 136, 196
MalI GATC 2 cut(s) 35, 120
MboI GATC 2 cut(s) 33, 118
MboII GAAGA 2 cut(s) 95, 128
MflI RGATCY 1 cut(s) 118
MlyI GAGTC 1 cut(s) 144
MnlI CCTC 4 cut(s) 38, 170, 197, 214
MvnI CGCG 4 cut(s) 54, 179, 181, 202
NdeII GATC 2 cut(s) 33, 118
NlaIII CATG 1 cut(s) 14
NmuCI GTSAC 2 cut(s) 136, 196
PaeR7I CTCGAG 2 cut(s) 29, 161
PagI TCATGA 1 cut(s) 10
Pfl23II CGTACG 1 cut(s) 186
PleI GAGTC 1 cut(s) 143
PpsI GAGTC 1 cut(s) 143
PspLI CGTACG 1 cut(s) 186
PsuI RGATCY 1 cut(s) 118
RsaI GTAC 2 cut(s) 5, 188
RsaNI GTAC 2 cut(s) 4, 187
Sau3AI GATC 2 cut(s) 33, 118
SchI GAGTC 1 cut(s) 144
SetI ASST 5 cut(s) 46, 93, 100, 114, 215
SfaNI GCATC 2 cut(s) 4, 183
Sfr274I CTCGAG 2 cut(s) 29, 161
SlaI CTCGAG 2 cut(s) 29, 161
SmlI CTYRAG 2 cut(s) 29, 161
SmoI CTYRAG 2 cut(s) 29, 161
SsiI CCGC 3 cut(s) 52, 141, 181
SspMI CTAG 1 cut(s) 226
TaaI ACNGT 1 cut(s) 8
TaiI ACGT 1 cut(s) 93
TaqI TCGA 3 cut(s) 30, 123, 162
TseFI GTSAC 2 cut(s) 136, 196
Tsp45I GTSAC 2 cut(s) 136, 196
TspGWI ACGGA 1 cut(s) 223
XhoI CTCGAG 2 cut(s) 29, 161
XspI CTAG 1 cut(s) 226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.