Rmu_sc0004448.1_g000010

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004448.1
OG0000160
Physical Location & Seq
Reverse (-)
41229 .. 41619
391 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004448.1_g000010.1.cds

Sequence Viewer

Length: 324 bp
atgtatttggagtacatccctcgcgagctcaatttcgtggccaatgaactcgctcaactggctacaggcattacattgaagtatggggttcgcgagcgcattctgaaagtcgagcgccgcacattgccttcatggctcgcgtggcctgacaggcctgatgatccggttgtcacagtcctagagcctattggcgtcgattggcgcatttcgttgatcaattacctcaaacaaccagatcctacagcagataggaagattcgctttcttgccttaaattacttcctcagggcgatgagctgggacgacgtggggaagatggcatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

107

Amino Acids

12.53

Weight (kDa)

7.98

Isoelectric Point (pI)

26.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000160)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11612 FvH4_2g25851 FvH4_3g22802 FvH4_3g22805 FvH4_3g31361 FvH4_3g31382 FvH4_4g05272 FvH4_4g05273 FvH4_4g14567 FvH4_4g15161 FvH4_5g22540 FvH4_6g13113 FvH4_6g31923 FvH4_6g31924 FvH4_6g33651 FvH4_6g45122 FvH4_7g03662
pyrus_communis pycom01g04240 pycom01g24010 pycom02g18210 pycom02g19420 pycom05g06510 pycom09g15750 pycom09g18940 pycom12g02580 pycom12g03100 pycom12g08310 pycom13g22710 pycom13g28060 pycom16g18340 pycom16g18350 pycom16g24880 pycom16g26240 pycom461g00260 pycom520g00980 pycom520g01320
rosa_chinensis RchiOBHm_Chr1g0320731 RchiOBHm_Chr2g0102771 RchiOBHm_Chr3g0462151 RchiOBHm_Chr5g0038141 RchiOBHm_Chr5g0069371 RchiOBHm_Chr7g0239101
rosa_multiflora Rmu_co8038252.1_g000001 Rmu_co8138412.1_g000001 Rmu_co8331087.1_g000001 Rmu_co8479311.1_g000001 Rmu_sc0000112.1_g000018 Rmu_sc0000346.1_g000012 Rmu_sc0002102.1_g000002 Rmu_sc0003505.1_g000013 Rmu_sc0004249.1_g000007 Rmu_sc0004448.1_g000010 Rmu_sc0004594.1_g000011 Rmu_sc0004915.1_g000010 Rmu_sc0008019.1_g000019 Rmu_sc0008303.1_g000001 Rmu_sc0008355.1_g000005 Rmu_sc0009253.1_g000018 Rmu_sc0010211.1_g000002 Rmu_sc0010252.1_g000009 Rmu_sc0011534.1_g000008 Rmu_sc0014811.1_g000009 Rmu_sc0019475.1_g000001 Rmu_sc0024897.1_g000001 Rmu_sc0024898.1_g000001 Rmu_sc0031791.1_g000001 Rmu_sc0038715.1_g000001
rosa_roxburghii Rroxscaffold_165G00436940 Rroxscaffold_174G00435270 Rroxscaffold_177G00434330 Rroxscaffold_177G00434340 Rroxscaffold_177G00434350 Rroxscaffold_1G00002160 Rroxscaffold_1G00025260 Rroxscaffold_1G00042950 Rroxscaffold_1G00068010 Rroxscaffold_2G00107530 Rroxscaffold_3G00221190 Rroxscaffold_3G00221520 Rroxscaffold_3G00223200 Rroxscaffold_4G00322230 Rroxscaffold_4G00331810 Rroxscaffold_5G00385150 Rroxscaffold_5G00387510 Rroxscaffold_6G00410520 Rroxscaffold_6G00423360 Rroxscaffold_6G00423370 Rroxscaffold_6G00429210 Rroxscaffold_7G00158300 Rroxscaffold_7G00163480 Rroxscaffold_7G00171410 Rroxscaffold_7G00178940 Rroxscaffold_7G00199480 Rroxscaffold_7G00205630 Rroxscaffold_7G00207440
rosa_rugosa Rorug01G0056400 Rorug04G0063900 Rorug05G0251400 Rorug07G0221900
rosa_samantha Rh1DG169400 Rh2AG292900 Rh2DG519200 Rh4DG260600 Rh5AG042600 Rh6BG117500
rosa_wichuraiana Rw0G001900 Rw0G005150 Rw0G006380 Rw0G015140 Rw0G016320 Rw0G019440 Rw0G019840 Rw0G023740 Rw1G001590 Rw1G002180 Rw1G003560 Rw1G004280 Rw1G006110 Rw1G006680 Rw1G007920 Rw1G008480 Rw1G009120 Rw1G010310 Rw1G014900 Rw1G019650 Rw1G022070 Rw1G022170 Rw1G041570 Rw2G002740 Rw2G005760 Rw2G032370 Rw2G046770 Rw2G050600 Rw2G051420 Rw3G015930 Rw3G016280 Rw3G019580 Rw3G028420 Rw4G003430 Rw4G005350 Rw4G007530 Rw4G008150 Rw4G009580 Rw4G010250 Rw4G015800 Rw4G017000 Rw4G017910 Rw4G018510 Rw4G019700 Rw4G031010 Rw5G012650 Rw5G020140 Rw5G022060 Rw5G034420 Rw5G035560 Rw5G043010 Rw5G046750 Rw5G047340 Rw5G049500 Rw6G001390 Rw6G002210 Rw6G004530 Rw6G004770 Rw6G005100 Rw6G005890 Rw6G011860 Rw6G014680 Rw6G019480 Rw6G028970 Rw6G033800 Rw7G013050 Rw7G014800 Rw7G025760 Rw7G025850 Rw7G026730 Rw7G026870 Rw7G036330 Rw7G036430 Rw7G039320 Rw7G039510 Rw7G039560 Rw7G041370 Rw7G042050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 24, 93, 140
AciI CCGC 1 cut(s) 118
AclWI GGATC 2 cut(s) 155, 230
AcoI YGGCCR 1 cut(s) 39
AcyI GRCGYC 1 cut(s) 192
AfaI GTAC 1 cut(s) 14
AgsI TTSAA 1 cut(s) 79
AjiI CACGTC 1 cut(s) 307
AluBI AGCT 2 cut(s) 28, 297
AluI AGCT 2 cut(s) 28, 297
Alw21I GWGCWC 1 cut(s) 30
AlwI GGATC 2 cut(s) 155, 230
AoxI GGCC 3 cut(s) 39, 143, 152
AspLEI GCGC 3 cut(s) 99, 117, 204
AxyI CCTNAGG 1 cut(s) 284
BalI TGGCCA 1 cut(s) 41
BanII GRGCYC 1 cut(s) 30
Bbv12I GWGCWC 1 cut(s) 30
BccI CCATC 1 cut(s) 310
BclI TGATCA 1 cut(s) 213
BfaI CTAG 1 cut(s) 179
BfmI CTRYAG 2 cut(s) 63, 240
BfoI RGCGCY 1 cut(s) 118
BglI GCCNNNNNGGC 2 cut(s) 133, 151
BisI GCNGC 1 cut(s) 118
BlsI GCNGC 1 cut(s) 119
BmgBI CACGTC 1 cut(s) 307
BsaHI GRCGYC 1 cut(s) 192
BsaWI WCCGGW 1 cut(s) 163
Bse1I ACTGG 1 cut(s) 63
Bse21I CCTNAGG 1 cut(s) 284
Bse3DI GCAATG 1 cut(s) 122
BseGI GGATG 1 cut(s) 15
BseMI GCAATG 1 cut(s) 122
BseMII CTCAG 1 cut(s) 298
BseNI ACTGG 1 cut(s) 63
BseYI CCCAGC 1 cut(s) 297
Bsh1236I CGCG 3 cut(s) 24, 93, 140
BshFI GGCC 3 cut(s) 41, 145, 154
BsiHKAI GWGCWC 1 cut(s) 30
BsiSI CCGG 1 cut(s) 164
BslFI GGGAC 1 cut(s) 314
BsmFI GGGAC 1 cut(s) 314
BsmI GAATGC 1 cut(s) 99
BsnI GGCC 3 cut(s) 41, 145, 154
Bsp1286I GDGCHC 1 cut(s) 30
Bsp143I GATC 3 cut(s) 160, 213, 235
Bsp68I TCGCGA 2 cut(s) 24, 93
BspACI CCGC 1 cut(s) 118
BspANI GGCC 3 cut(s) 41, 145, 154
BspCNI CTCAG 1 cut(s) 297
BspFNI CGCG 3 cut(s) 24, 93, 140
BspPI GGATC 2 cut(s) 155, 230
BsrDI GCAATG 1 cut(s) 122
BsrI ACTGG 1 cut(s) 63
BssMI GATC 3 cut(s) 160, 213, 235
BssNI GRCGYC 1 cut(s) 192
Bst4CI ACNGT 1 cut(s) 175
BstACI GRCGYC 1 cut(s) 192
BstC8I GCNNGC 3 cut(s) 26, 95, 138
BstDEI CTNAG 1 cut(s) 284
BstF5I GGATG 1 cut(s) 15
BstFNI CGCG 3 cut(s) 24, 93, 140
BstH2I RGCGCY 1 cut(s) 118
BstHHI GCGC 3 cut(s) 99, 117, 204
BstKTI GATC 3 cut(s) 163, 216, 238
BstMBI GATC 3 cut(s) 160, 213, 235
BstMWI GCNNNNNNNGC 4 cut(s) 59, 133, 142, 151
BstSFI CTRYAG 2 cut(s) 63, 240
BstUI CGCG 3 cut(s) 24, 93, 140
BstX2I RGATCY 1 cut(s) 235
BstYI RGATCY 1 cut(s) 235
Bsu36I CCTNAGG 1 cut(s) 284
BsuRI GGCC 3 cut(s) 41, 145, 154
BtgZI GCGATG 1 cut(s) 305
BtrI CACGTC 1 cut(s) 307
BtsCI GGATG 1 cut(s) 15
BtuMI TCGCGA 2 cut(s) 24, 93
Cac8I GCNNGC 3 cut(s) 26, 95, 138
CfoI GCGC 3 cut(s) 99, 117, 204
CseI GACGC 1 cut(s) 181
Csp6I GTAC 1 cut(s) 13
CviAII CATG 1 cut(s) 132
CviJI RGCY 8 cut(s) 28, 41, 62, 136, 145, 154, 184, 297
CviKI_1 RGCY 8 cut(s) 28, 41, 62, 136, 145, 154, 184, 297
CviQI GTAC 1 cut(s) 13
DdeI CTNAG 1 cut(s) 284
DpnI GATC 3 cut(s) 162, 215, 237
DpnII GATC 3 cut(s) 160, 213, 235
EaeI YGGCCR 1 cut(s) 39
Ecl136II GAGCTC 1 cut(s) 28
Eco147I AGGCCT 1 cut(s) 154
Eco24I GRGCYC 1 cut(s) 30
Eco53kI GAGCTC 1 cut(s) 28
Eco81I CCTNAGG 1 cut(s) 284
EcoICRI GAGCTC 1 cut(s) 28
EcoT38I GRGCYC 1 cut(s) 30
FaeI CATG 1 cut(s) 135
FaiI YATR 3 cut(s) 84, 133, 322
FalI AAGNNNNNCTT 2 cut(s) 245, 277
FaqI GGGAC 1 cut(s) 314
FatI CATG 1 cut(s) 131
FbaI TGATCA 1 cut(s) 213
Fnu4HI GCNGC 1 cut(s) 118
FokI GGATG 1 cut(s) 2
FriOI GRGCYC 1 cut(s) 30
Fsp4HI GCNGC 1 cut(s) 118
FspBI CTAG 1 cut(s) 179
GlaI GCGC 3 cut(s) 98, 116, 203
GluI GCNGC 1 cut(s) 118
GsaI CCCAGC 1 cut(s) 301
HaeII RGCGCY 1 cut(s) 118
HaeIII GGCC 3 cut(s) 41, 145, 154
HapII CCGG 1 cut(s) 164
HgaI GACGC 1 cut(s) 181
HhaI GCGC 3 cut(s) 99, 117, 204
Hin1I GRCGYC 1 cut(s) 192
Hin1II CATG 1 cut(s) 135
Hin6I GCGC 3 cut(s) 97, 115, 202
HinP1I GCGC 3 cut(s) 97, 115, 202
HinfI GANTC 1 cut(s) 256
HpaII CCGG 1 cut(s) 164
Hpy188I TCNGA 1 cut(s) 105
Hpy188III TCNNGA 2 cut(s) 23, 92
Hpy99I CGWCG 2 cut(s) 197, 308
HpyAV CCTTC 1 cut(s) 138
HpyCH4III ACNGT 1 cut(s) 175
HpyCH4IV ACGT 1 cut(s) 306
HpyF10VI GCNNNNNNNGC 4 cut(s) 59, 133, 142, 151
HpyF3I CTNAG 1 cut(s) 284
HpySE526I ACGT 1 cut(s) 306
Hsp92I GRCGYC 1 cut(s) 192
Hsp92II CATG 1 cut(s) 135
HspAI GCGC 3 cut(s) 97, 115, 202
Ksp22I TGATCA 1 cut(s) 213
Kzo9I GATC 3 cut(s) 160, 213, 235
LpnPI CCDG 9 cut(s) 44, 51, 136, 159, 168, 177, 246, 271, 283
MaeI CTAG 1 cut(s) 179
MaeII ACGT 1 cut(s) 306
MaeIII GTNAC 1 cut(s) 169
MalI GATC 3 cut(s) 162, 215, 237
MboI GATC 3 cut(s) 160, 213, 235
MboII GAAGA 1 cut(s) 265
MflI RGATCY 1 cut(s) 235
MhlI GDGCHC 1 cut(s) 30
MlsI TGGCCA 1 cut(s) 41
MluCI AATT 3 cut(s) 31, 217, 274
MluNI TGGCCA 1 cut(s) 41
MnlI CCTC 3 cut(s) 30, 233, 293
Mox20I TGGCCA 1 cut(s) 41
MscI TGGCCA 1 cut(s) 41
MseI TTAA 1 cut(s) 272
Msp20I TGGCCA 1 cut(s) 41
MspI CCGG 1 cut(s) 164
Mva1269I GAATGC 1 cut(s) 99
MvnI CGCG 3 cut(s) 24, 93, 140
MwoI GCNNNNNNNGC 4 cut(s) 59, 133, 142, 151
NdeII GATC 3 cut(s) 160, 213, 235
NlaIII CATG 1 cut(s) 135
NmuCI GTSAC 1 cut(s) 169
NruI TCGCGA 2 cut(s) 24, 93
PceI AGGCCT 1 cut(s) 154
PctI GAATGC 1 cut(s) 99
PfeI GAWTC 1 cut(s) 256
PkrI GCNGC 1 cut(s) 119
Psp124BI GAGCTC 1 cut(s) 30
PspFI CCCAGC 1 cut(s) 297
PsuI RGATCY 1 cut(s) 235
RruI TCGCGA 2 cut(s) 24, 93
RsaI GTAC 1 cut(s) 14
RsaNI GTAC 1 cut(s) 13
SacI GAGCTC 1 cut(s) 30
SaqAI TTAA 1 cut(s) 272
SatI GCNGC 1 cut(s) 118
Sau3AI GATC 3 cut(s) 160, 213, 235
SduI GDGCHC 1 cut(s) 30
SetI ASST 4 cut(s) 30, 225, 299, 309
SfcI CTRYAG 2 cut(s) 63, 240
SfiI GGCCNNNNNGGCC 1 cut(s) 151
Sse9I AATT 3 cut(s) 31, 217, 274
SseBI AGGCCT 1 cut(s) 154
SsiI CCGC 1 cut(s) 118
SspMI CTAG 1 cut(s) 179
SstI GAGCTC 1 cut(s) 30
StuI AGGCCT 1 cut(s) 154
TaaI ACNGT 1 cut(s) 175
TaiI ACGT 1 cut(s) 309
TaqI TCGA 2 cut(s) 111, 195
TasI AATT 3 cut(s) 31, 217, 274
TatI WGTACW 1 cut(s) 12
TauI GCSGC 1 cut(s) 120
TfiI GAWTC 1 cut(s) 256
Tru1I TTAA 1 cut(s) 272
Tru9I TTAA 1 cut(s) 272
TseFI GTSAC 1 cut(s) 169
Tsp45I GTSAC 1 cut(s) 169
TspDTI ATGAA 2 cut(s) 60, 120
XspI CTAG 1 cut(s) 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.