FvH4_4g15161

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000160
Physical Location & Seq
Forward (+)
18741164 .. 18741667
504 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g15161.t1

Sequence Viewer

Length: 504 bp
ATGGATGCTATGGGACCCATAACTCCGAAATCCTCTGGCGGCCACATGTACATTTTAGCAGGCACGGATTCCTTCTCGAAGTGGTCAGAGGCGGTACTGCTTAAAGAGATAAAGAAGGAGACTGTTGTAGACTTCATCAAAACATGCATTATTCAATGGTATGGTGTGCCACGTTACATCATCACAGATAATGCCAAGTACTTCTCAAATAGTGCTATGCAAAAACTTAGCGAGAAGTATCACTTCAAGCTACACTTTTCTTCAATGTACAATGCACCAGCAAATGGTTTGGCGGAGGCATTCAATAAGACGCTATGCAACATCTTGAAGAAGACTGTCAGCAAGTCACAAAGAGACTGGCATGAGAAGATGGGCGAAGCATTGTGGGCGTATAGAACGACATATCGAACCACCACAAATGTCACACCTTACTCTCTAGTGTATGGTGTTGAAGCTGTCTTGCCGTTAGAGAAACAAATTTCATCATTGAGGATTGCTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

168

Amino Acids

19.0

Weight (kDa)

9.34

Isoelectric Point (pI)

26.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
rve PF00665 2 - 91 2.3e-09 Integrase core domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000160)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11612 FvH4_2g25851 FvH4_3g22802 FvH4_3g22805 FvH4_3g31361 FvH4_3g31382 FvH4_4g05272 FvH4_4g05273 FvH4_4g14567 FvH4_4g15161 FvH4_5g22540 FvH4_6g13113 FvH4_6g31923 FvH4_6g31924 FvH4_6g33651 FvH4_6g45122 FvH4_7g03662
pyrus_communis pycom01g04240 pycom01g24010 pycom02g18210 pycom02g19420 pycom05g06510 pycom09g15750 pycom09g18940 pycom12g02580 pycom12g03100 pycom12g08310 pycom13g22710 pycom13g28060 pycom16g18340 pycom16g18350 pycom16g24880 pycom16g26240 pycom461g00260 pycom520g00980 pycom520g01320
rosa_chinensis RchiOBHm_Chr1g0320731 RchiOBHm_Chr2g0102771 RchiOBHm_Chr3g0462151 RchiOBHm_Chr5g0038141 RchiOBHm_Chr5g0069371 RchiOBHm_Chr7g0239101
rosa_multiflora Rmu_co8038252.1_g000001 Rmu_co8138412.1_g000001 Rmu_co8331087.1_g000001 Rmu_co8479311.1_g000001 Rmu_sc0000112.1_g000018 Rmu_sc0000346.1_g000012 Rmu_sc0002102.1_g000002 Rmu_sc0003505.1_g000013 Rmu_sc0004249.1_g000007 Rmu_sc0004448.1_g000010 Rmu_sc0004594.1_g000011 Rmu_sc0004915.1_g000010 Rmu_sc0008019.1_g000019 Rmu_sc0008303.1_g000001 Rmu_sc0008355.1_g000005 Rmu_sc0009253.1_g000018 Rmu_sc0010211.1_g000002 Rmu_sc0010252.1_g000009 Rmu_sc0011534.1_g000008 Rmu_sc0014811.1_g000009 Rmu_sc0019475.1_g000001 Rmu_sc0024897.1_g000001 Rmu_sc0024898.1_g000001 Rmu_sc0031791.1_g000001 Rmu_sc0038715.1_g000001
rosa_roxburghii Rroxscaffold_165G00436940 Rroxscaffold_174G00435270 Rroxscaffold_177G00434330 Rroxscaffold_177G00434340 Rroxscaffold_177G00434350 Rroxscaffold_1G00002160 Rroxscaffold_1G00025260 Rroxscaffold_1G00042950 Rroxscaffold_1G00068010 Rroxscaffold_2G00107530 Rroxscaffold_3G00221190 Rroxscaffold_3G00221520 Rroxscaffold_3G00223200 Rroxscaffold_4G00322230 Rroxscaffold_4G00331810 Rroxscaffold_5G00385150 Rroxscaffold_5G00387510 Rroxscaffold_6G00410520 Rroxscaffold_6G00423360 Rroxscaffold_6G00423370 Rroxscaffold_6G00429210 Rroxscaffold_7G00158300 Rroxscaffold_7G00163480 Rroxscaffold_7G00171410 Rroxscaffold_7G00178940 Rroxscaffold_7G00199480 Rroxscaffold_7G00205630 Rroxscaffold_7G00207440
rosa_rugosa Rorug01G0056400 Rorug04G0063900 Rorug05G0251400 Rorug07G0221900
rosa_samantha Rh1DG169400 Rh2AG292900 Rh2DG519200 Rh4DG260600 Rh5AG042600 Rh6BG117500
rosa_wichuraiana Rw0G001900 Rw0G005150 Rw0G006380 Rw0G015140 Rw0G016320 Rw0G019440 Rw0G019840 Rw0G023740 Rw1G001590 Rw1G002180 Rw1G003560 Rw1G004280 Rw1G006110 Rw1G006680 Rw1G007920 Rw1G008480 Rw1G009120 Rw1G010310 Rw1G014900 Rw1G019650 Rw1G022070 Rw1G022170 Rw1G041570 Rw2G002740 Rw2G005760 Rw2G032370 Rw2G046770 Rw2G050600 Rw2G051420 Rw3G015930 Rw3G016280 Rw3G019580 Rw3G028420 Rw4G003430 Rw4G005350 Rw4G007530 Rw4G008150 Rw4G009580 Rw4G010250 Rw4G015800 Rw4G017000 Rw4G017910 Rw4G018510 Rw4G019700 Rw4G031010 Rw5G012650 Rw5G020140 Rw5G022060 Rw5G034420 Rw5G035560 Rw5G043010 Rw5G046750 Rw5G047340 Rw5G049500 Rw6G001390 Rw6G002210 Rw6G004530 Rw6G004770 Rw6G005100 Rw6G005890 Rw6G011860 Rw6G014680 Rw6G019480 Rw6G028970 Rw6G033800 Rw7G013050 Rw7G014800 Rw7G025760 Rw7G025850 Rw7G026730 Rw7G026870 Rw7G036330 Rw7G036430 Rw7G039320 Rw7G039510 Rw7G039560 Rw7G041370 Rw7G042050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 284
AccI GTMKAC 1 cut(s) 129
AciI CCGC 3 cut(s) 39, 92, 293
AcoI YGGCCR 1 cut(s) 40
AcsI RAATTY 1 cut(s) 477
AfaI GTAC 4 cut(s) 50, 96, 200, 269
AfiI CCNNNNNNNGG 1 cut(s) 284
AflIII ACRYGT 1 cut(s) 45
AgsI TTSAA 6 cut(s) 155, 247, 264, 304, 328, 452
AluBI AGCT 2 cut(s) 250, 455
AluI AGCT 2 cut(s) 250, 455
Alw26I GTCTC 2 cut(s) 113, 348
AoxI GGCC 1 cut(s) 40
ApoI RAATTY 1 cut(s) 477
AspS9I GGNCC 1 cut(s) 14
AvaII GGWCC 1 cut(s) 14
BbsI GAAGAC 1 cut(s) 338
BccI CCATC 1 cut(s) 364
BceAI ACGGC 1 cut(s) 448
BcoDI GTCTC 2 cut(s) 113, 348
BfaI CTAG 1 cut(s) 437
BisI GCNGC 1 cut(s) 40
BlsI GCNGC 1 cut(s) 41
BmcAI AGTACT 1 cut(s) 200
Bme18I GGWCC 1 cut(s) 14
BmgT120I GGNCC 1 cut(s) 14
BmiI GGNNCC 2 cut(s) 15, 16
BpiI GAAGAC 1 cut(s) 338
Bsc4I CCNNNNNNNGG 1 cut(s) 284
Bse1I ACTGG 1 cut(s) 362
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 1 cut(s) 284
BseNI ACTGG 1 cut(s) 362
BshFI GGCC 1 cut(s) 42
BslFI GGGAC 1 cut(s) 27
BslI CCNNNNNNNGG 1 cut(s) 284
BsmAI GTCTC 2 cut(s) 113, 348
BsmFI GGGAC 1 cut(s) 27
BsmI GAATGC 1 cut(s) 299
BsnI GGCC 1 cut(s) 42
Bsp1407I TGTACA 2 cut(s) 48, 267
BspACI CCGC 3 cut(s) 39, 92, 293
BspANI GGCC 1 cut(s) 42
BspLI GGNNCC 2 cut(s) 15, 16
BsrGI TGTACA 2 cut(s) 48, 267
BsrI ACTGG 1 cut(s) 362
Bst4CI ACNGT 2 cut(s) 124, 337
BstAUI TGTACA 2 cut(s) 48, 267
BstC8I GCNNGC 1 cut(s) 61
BstDEI CTNAG 1 cut(s) 227
BstF5I GGATG 1 cut(s) 10
BstMAI GTCTC 2 cut(s) 113, 348
BstMWI GCNNNNNNNGC 1 cut(s) 386
BstNSI RCATGY 2 cut(s) 49, 147
BstV2I GAAGAC 1 cut(s) 338
BsuRI GGCC 1 cut(s) 42
BtsCI GGATG 1 cut(s) 10
Cac8I GCNNGC 1 cut(s) 61
Cfr13I GGNCC 1 cut(s) 14
CseI GACGC 1 cut(s) 319
Csp6I GTAC 4 cut(s) 49, 95, 199, 268
CviAII CATG 3 cut(s) 46, 144, 362
CviJI RGCY 3 cut(s) 42, 250, 455
CviKI_1 RGCY 3 cut(s) 42, 250, 455
CviQI GTAC 4 cut(s) 49, 95, 199, 268
DdeI CTNAG 1 cut(s) 227
EaeI YGGCCR 1 cut(s) 40
EciI GGCGGA 1 cut(s) 308
Eco47I GGWCC 1 cut(s) 14
EcoO109I RGGNCCY 1 cut(s) 14
EcoT22I ATGCAT 1 cut(s) 149
FaeI CATG 3 cut(s) 49, 147, 365
FalI AAGNNNNNCTT 4 cut(s) 227, 259, 239, 271
FaqI GGGAC 1 cut(s) 27
FatI CATG 3 cut(s) 45, 143, 361
FblI GTMKAC 1 cut(s) 129
Fnu4HI GCNGC 1 cut(s) 40
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 1 cut(s) 40
FspBI CTAG 1 cut(s) 437
GluI GCNGC 1 cut(s) 40
HaeIII GGCC 1 cut(s) 42
HgaI GACGC 1 cut(s) 319
Hin1II CATG 3 cut(s) 49, 147, 365
HinfI GANTC 1 cut(s) 68
Hpy166II GTNNAC 1 cut(s) 130
Hpy188I TCNGA 2 cut(s) 27, 88
Hpy188III TCNNGA 2 cut(s) 76, 325
Hpy8I GTNNAC 1 cut(s) 130
HpyAV CCTTC 2 cut(s) 82, 109
HpyCH4III ACNGT 2 cut(s) 124, 337
HpyCH4IV ACGT 1 cut(s) 172
HpyCH4V TGCA 4 cut(s) 147, 220, 275, 318
HpyF10VI GCNNNNNNNGC 1 cut(s) 386
HpyF3I CTNAG 1 cut(s) 227
HpySE526I ACGT 1 cut(s) 172
Hsp92II CATG 3 cut(s) 49, 147, 365
KflI GGGWCCC 1 cut(s) 14
LpnPI CCDG 4 cut(s) 21, 45, 291, 343
MaeI CTAG 1 cut(s) 437
MaeII ACGT 1 cut(s) 172
MaeIII GTNAC 3 cut(s) 173, 345, 421
MboII GAAGA 4 cut(s) 252, 340, 343, 379
MluCI AATT 1 cut(s) 477
MnlI CCTC 4 cut(s) 43, 82, 289, 483
Mph1103I ATGCAT 1 cut(s) 149
MseI TTAA 1 cut(s) 102
Mva1269I GAATGC 1 cut(s) 299
MwoI GCNNNNNNNGC 1 cut(s) 386
NlaIII CATG 3 cut(s) 49, 147, 365
NlaIV GGNNCC 2 cut(s) 15, 16
NmuCI GTSAC 2 cut(s) 345, 421
NsiI ATGCAT 1 cut(s) 149
NspI RCATGY 2 cut(s) 49, 147
PciI ACATGT 1 cut(s) 45
PctI GAATGC 1 cut(s) 299
PfeI GAWTC 1 cut(s) 68
PflMI CCANNNNNTGG 1 cut(s) 284
PkrI GCNGC 1 cut(s) 41
PpuMI RGGWCCY 1 cut(s) 14
PscI ACATGT 1 cut(s) 45
Psp5II RGGWCCY 1 cut(s) 14
PspN4I GGNNCC 2 cut(s) 15, 16
PspPI GGNCC 1 cut(s) 14
PspPPI RGGWCCY 1 cut(s) 14
RsaI GTAC 4 cut(s) 50, 96, 200, 269
RsaNI GTAC 4 cut(s) 49, 95, 199, 268
SaqAI TTAA 1 cut(s) 102
SatI GCNGC 1 cut(s) 40
Sau96I GGNCC 1 cut(s) 14
ScaI AGTACT 1 cut(s) 200
SetI ASST 4 cut(s) 175, 252, 430, 457
SinI GGWCC 1 cut(s) 14
Sse9I AATT 1 cut(s) 477
SsiI CCGC 3 cut(s) 39, 92, 293
SspMI CTAG 1 cut(s) 437
TaaI ACNGT 2 cut(s) 124, 337
TaiI ACGT 1 cut(s) 175
TaqI TCGA 2 cut(s) 77, 406
TasI AATT 1 cut(s) 477
TatI WGTACW 3 cut(s) 48, 198, 267
TauI GCSGC 1 cut(s) 42
TfiI GAWTC 1 cut(s) 68
Tru1I TTAA 1 cut(s) 102
Tru9I TTAA 1 cut(s) 102
TseFI GTSAC 2 cut(s) 345, 421
Tsp45I GTSAC 2 cut(s) 345, 421
TspDTI ATGAA 2 cut(s) 124, 471
TspGWI ACGGA 1 cut(s) 80
Van91I CCANNNNNTGG 1 cut(s) 284
VpaK11BI GGWCC 1 cut(s) 14
XapI RAATTY 1 cut(s) 477
XceI RCATGY 2 cut(s) 49, 147
XmiI GTMKAC 1 cut(s) 129
XspI CTAG 1 cut(s) 437
ZrmI AGTACT 1 cut(s) 200
Zsp2I ATGCAT 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.