pycom02g19420

transferase activity, transferring hexosyl groups

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0000160
Physical Location & Seq
Forward (+)
17246511 .. 17247482
972 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g19420.1

Sequence Viewer

Length: 819 bp
ATGACGTGCAGAACACCAAGAGGCGTTTACACAGATCAAGGTCTCCCTCACGACTCCCCTTGTCCTGGTCCTATCACGACGTGGCAGACCTCTCAAGTTGTACATCTCAGCGGCCAAAGAATCCATCAGATGACTTCTTGCCTTAGCCAAAATCTTAAGCTACTGGAGATTAATTATTCTGCCGTTGAGAAGCTCTGCCTAGCCTTATTTTTCGCTGCATCAAAACTCAAGCATTACATGCTCTCATCGGTCACTCAGGTCATCGCCCAGACTAATGTCATTCGTTACATGCTCACTTGGCCGCTAGTAAAAGGCCGAATCGAAAAATGGACAATGGCACTGTCTGAATTCAGTTTGCAATATCCCTCACTATATGGTTTTGGGGGCAATGACGTTGAAATCAGCATGGTGGAAATACGTGATAATTACTGGACGATGTACTTTGATGGCTCTAGTACTTTAGTCTCAGCTGGTGTTGGGATCGTTATTCAATCCCCAAATCACAGCCGCTGGTATTTTTTTCTCAAGTTCGATTTCGATTGTACGAATAATCAGGTCGAATACGAAGCTCTTATCATCGGCCTTGGTATCCTACATGATTTACAGGTAACTCGTGTCCTTATTGTCGGTGATTCCGAACTTGTGATTAACCAACTTAATGGGACTTTTCGTTGCATGAGTTGCACTCTGGCACCTTATCGCATGGTTGCCAGCTATTTGGCCGAGTCTTTCAACGACAGCCTTCAGAGCACAACTTTTGGAGGGCAAACTAGGCTGAGAAATACCTGTGTTATGACGAGCATACCTAGCCTTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

273

Amino Acids

30.59

Weight (kDa)

6.58

Isoelectric Point (pI)

42.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RT_RNaseH PF17917 42 - 117 1.4e-10 RNase H-like domain found in reverse transcriptase
RVT_3 PF13456 148 - 244 1.6e-08 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000160)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11612 FvH4_2g25851 FvH4_3g22802 FvH4_3g22805 FvH4_3g31361 FvH4_3g31382 FvH4_4g05272 FvH4_4g05273 FvH4_4g14567 FvH4_4g15161 FvH4_5g22540 FvH4_6g13113 FvH4_6g31923 FvH4_6g31924 FvH4_6g33651 FvH4_6g45122 FvH4_7g03662
pyrus_communis pycom01g04240 pycom01g24010 pycom02g18210 pycom02g19420 pycom05g06510 pycom09g15750 pycom09g18940 pycom12g02580 pycom12g03100 pycom12g08310 pycom13g22710 pycom13g28060 pycom16g18340 pycom16g18350 pycom16g24880 pycom16g26240 pycom461g00260 pycom520g00980 pycom520g01320
rosa_chinensis RchiOBHm_Chr1g0320731 RchiOBHm_Chr2g0102771 RchiOBHm_Chr3g0462151 RchiOBHm_Chr5g0038141 RchiOBHm_Chr5g0069371 RchiOBHm_Chr7g0239101
rosa_multiflora Rmu_co8038252.1_g000001 Rmu_co8138412.1_g000001 Rmu_co8331087.1_g000001 Rmu_co8479311.1_g000001 Rmu_sc0000112.1_g000018 Rmu_sc0000346.1_g000012 Rmu_sc0002102.1_g000002 Rmu_sc0003505.1_g000013 Rmu_sc0004249.1_g000007 Rmu_sc0004448.1_g000010 Rmu_sc0004594.1_g000011 Rmu_sc0004915.1_g000010 Rmu_sc0008019.1_g000019 Rmu_sc0008303.1_g000001 Rmu_sc0008355.1_g000005 Rmu_sc0009253.1_g000018 Rmu_sc0010211.1_g000002 Rmu_sc0010252.1_g000009 Rmu_sc0011534.1_g000008 Rmu_sc0014811.1_g000009 Rmu_sc0019475.1_g000001 Rmu_sc0024897.1_g000001 Rmu_sc0024898.1_g000001 Rmu_sc0031791.1_g000001 Rmu_sc0038715.1_g000001
rosa_roxburghii Rroxscaffold_165G00436940 Rroxscaffold_174G00435270 Rroxscaffold_177G00434330 Rroxscaffold_177G00434340 Rroxscaffold_177G00434350 Rroxscaffold_1G00002160 Rroxscaffold_1G00025260 Rroxscaffold_1G00042950 Rroxscaffold_1G00068010 Rroxscaffold_2G00107530 Rroxscaffold_3G00221190 Rroxscaffold_3G00221520 Rroxscaffold_3G00223200 Rroxscaffold_4G00322230 Rroxscaffold_4G00331810 Rroxscaffold_5G00385150 Rroxscaffold_5G00387510 Rroxscaffold_6G00410520 Rroxscaffold_6G00423360 Rroxscaffold_6G00423370 Rroxscaffold_6G00429210 Rroxscaffold_7G00158300 Rroxscaffold_7G00163480 Rroxscaffold_7G00171410 Rroxscaffold_7G00178940 Rroxscaffold_7G00199480 Rroxscaffold_7G00205630 Rroxscaffold_7G00207440
rosa_rugosa Rorug01G0056400 Rorug04G0063900 Rorug05G0251400 Rorug07G0221900
rosa_samantha Rh1DG169400 Rh2AG292900 Rh2DG519200 Rh4DG260600 Rh5AG042600 Rh6BG117500
rosa_wichuraiana Rw0G001900 Rw0G005150 Rw0G006380 Rw0G015140 Rw0G016320 Rw0G019440 Rw0G019840 Rw0G023740 Rw1G001590 Rw1G002180 Rw1G003560 Rw1G004280 Rw1G006110 Rw1G006680 Rw1G007920 Rw1G008480 Rw1G009120 Rw1G010310 Rw1G014900 Rw1G019650 Rw1G022070 Rw1G022170 Rw1G041570 Rw2G002740 Rw2G005760 Rw2G032370 Rw2G046770 Rw2G050600 Rw2G051420 Rw3G015930 Rw3G016280 Rw3G019580 Rw3G028420 Rw4G003430 Rw4G005350 Rw4G007530 Rw4G008150 Rw4G009580 Rw4G010250 Rw4G015800 Rw4G017000 Rw4G017910 Rw4G018510 Rw4G019700 Rw4G031010 Rw5G012650 Rw5G020140 Rw5G022060 Rw5G034420 Rw5G035560 Rw5G043010 Rw5G046750 Rw5G047340 Rw5G049500 Rw6G001390 Rw6G002210 Rw6G004530 Rw6G004770 Rw6G005100 Rw6G005890 Rw6G011860 Rw6G014680 Rw6G019480 Rw6G028970 Rw6G033800 Rw7G013050 Rw7G014800 Rw7G025760 Rw7G025850 Rw7G026730 Rw7G026870 Rw7G036330 Rw7G036430 Rw7G039320 Rw7G039510 Rw7G039560 Rw7G041370 Rw7G042050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 691
AciI CCGC 3 cut(s) 111, 302, 508
AclWI GGATC 1 cut(s) 488
AcoI YGGCCR 3 cut(s) 112, 299, 720
AcsI RAATTY 1 cut(s) 347
AcuI CTGAAG 1 cut(s) 728
AdeI CACNNNGTG 1 cut(s) 81
AfaI GTAC 4 cut(s) 102, 440, 457, 544
AfiI CCNNNNNNNGG 2 cut(s) 65, 812
AflII CTTAAG 1 cut(s) 155
AgsI TTSAA 3 cut(s) 398, 491, 733
AjiI CACGTC 2 cut(s) 6, 81
AjnI CCWGG 1 cut(s) 64
AluBI AGCT 5 cut(s) 160, 193, 470, 569, 714
AluI AGCT 5 cut(s) 160, 193, 470, 569, 714
Alw21I GWGCWC 1 cut(s) 752
Alw26I GTCTC 2 cut(s) 47, 469
AlwI GGATC 1 cut(s) 488
AlwNI CAGNNNCTG 1 cut(s) 510
AoxI GGCC 5 cut(s) 112, 299, 313, 580, 720
ApeKI GCWGC 1 cut(s) 215
ApoI RAATTY 1 cut(s) 347
AseI ATTAAT 1 cut(s) 171
AspS9I GGNCC 1 cut(s) 68
AsuHPI GGTGA 1 cut(s) 641
AvaII GGWCC 1 cut(s) 68
BanI GGYRCC 1 cut(s) 691
BauI CACGAG 1 cut(s) 612
Bbv12I GWGCWC 1 cut(s) 752
BbvI GCAGC 1 cut(s) 202
BccI CCATC 2 cut(s) 132, 440
BceAI ACGGC 1 cut(s) 167
BciT130I CCWGG 1 cut(s) 66
BciVI GTATCC 1 cut(s) 599
BcoDI GTCTC 2 cut(s) 47, 469
BfaI CTAG 5 cut(s) 200, 305, 453, 771, 807
BfrI CTTAAG 1 cut(s) 155
BfuI GTATCC 1 cut(s) 599
BisI GCNGC 4 cut(s) 112, 216, 302, 508
BlsI GCNGC 4 cut(s) 113, 217, 303, 509
BmcAI AGTACT 1 cut(s) 457
Bme1390I CCNGG 1 cut(s) 66
Bme18I GGWCC 1 cut(s) 68
BmgBI CACGTC 2 cut(s) 6, 81
BmgT120I GGNCC 1 cut(s) 68
BmiI GGNNCC 1 cut(s) 693
BmrFI CCNGG 1 cut(s) 66
BmsI GCATC 1 cut(s) 227
BoxI GACNNNNGTC 1 cut(s) 275
BplI GAGNNNNNCTC 2 cut(s) 670, 702
BpmI CTGGAG 1 cut(s) 185
Bpu10I CCTNAGC 1 cut(s) 143
BpuEI CTTGAG 3 cut(s) 78, 212, 509
BsaAI YACGTR 1 cut(s) 419
BsaI GGTCTC 1 cut(s) 47
BsaJI CCNNGG 2 cut(s) 583, 811
Bsc4I CCNNNNNNNGG 2 cut(s) 65, 812
Bse1I ACTGG 2 cut(s) 168, 434
Bse3DI GCAATG 1 cut(s) 394
BseBI CCWGG 1 cut(s) 66
BseDI CCNNGG 2 cut(s) 583, 811
BseLI CCNNNNNNNGG 2 cut(s) 65, 812
BseMI GCAATG 1 cut(s) 394
BseMII CTCAG 4 cut(s) 121, 269, 480, 767
BseNI ACTGG 2 cut(s) 168, 434
BseXI GCAGC 1 cut(s) 202
BsgI GTGCAG 1 cut(s) 28
BshFI GGCC 5 cut(s) 114, 301, 315, 582, 722
BshNI GGYRCC 1 cut(s) 691
BsiHKAI GWGCWC 1 cut(s) 752
BslFI GGGAC 1 cut(s) 676
BslI CCNNNNNNNGG 2 cut(s) 65, 812
BsmAI GTCTC 2 cut(s) 47, 469
BsmFI GGGAC 1 cut(s) 676
BsnI GGCC 5 cut(s) 114, 301, 315, 582, 722
Bso31I GGTCTC 1 cut(s) 47
Bsp1286I GDGCHC 1 cut(s) 752
Bsp1407I TGTACA 1 cut(s) 100
Bsp143I GATC 2 cut(s) 34, 480
BspACI CCGC 3 cut(s) 111, 302, 508
BspANI GGCC 5 cut(s) 114, 301, 315, 582, 722
BspCNI CTCAG 4 cut(s) 120, 268, 479, 768
BspLI GGNNCC 1 cut(s) 693
BspPI GGATC 1 cut(s) 488
BspT107I GGYRCC 1 cut(s) 691
BspTI CTTAAG 1 cut(s) 155
BspTNI GGTCTC 1 cut(s) 47
BsrDI GCAATG 1 cut(s) 394
BsrGI TGTACA 1 cut(s) 100
BsrI ACTGG 2 cut(s) 168, 434
BssECI CCNNGG 2 cut(s) 583, 811
BssMI GATC 2 cut(s) 34, 480
BssSI CACGAG 1 cut(s) 612
BssT1I CCWWGG 2 cut(s) 583, 811
Bst2BI CACGAG 1 cut(s) 612
Bst2UI CCWGG 1 cut(s) 66
Bst4CI ACNGT 1 cut(s) 342
BstAFI CTTAAG 1 cut(s) 155
BstAPI GCANNNNNTGC 2 cut(s) 238, 681
BstAUI TGTACA 1 cut(s) 100
BstBAI YACGTR 1 cut(s) 419
BstC8I GCNNGC 1 cut(s) 712
BstDEI CTNAG 5 cut(s) 107, 143, 255, 466, 776
BstKTI GATC 2 cut(s) 37, 483
BstMAI GTCTC 2 cut(s) 47, 469
BstMBI GATC 2 cut(s) 34, 480
BstMWI GCNNNNNNNGC 6 cut(s) 238, 298, 681, 747, 772, 807
BstNI CCWGG 1 cut(s) 66
BstNSI RCATGY 2 cut(s) 241, 292
BstPAI GACNNNNGTC 1 cut(s) 275
BstSCI CCNGG 1 cut(s) 64
BstV1I GCAGC 1 cut(s) 202
BstXI CCANNNNNNTGG 2 cut(s) 659, 718
BsuI GTATCC 1 cut(s) 599
BsuRI GGCC 5 cut(s) 114, 301, 315, 582, 722
BtgZI GCGATG 1 cut(s) 247
BtrI CACGTC 2 cut(s) 6, 81
BtsIMutI CAGTG 1 cut(s) 338
Cac8I GCNNGC 1 cut(s) 712
CaiI CAGNNNCTG 1 cut(s) 510
Cfr13I GGNCC 1 cut(s) 68
Csp6I GTAC 4 cut(s) 101, 439, 456, 543
CviAII CATG 6 cut(s) 238, 289, 406, 596, 676, 703
CviQI GTAC 4 cut(s) 101, 439, 456, 543
DdeI CTNAG 5 cut(s) 107, 143, 255, 466, 776
DpnI GATC 2 cut(s) 36, 482
DpnII GATC 2 cut(s) 34, 480
DraIII CACNNNGTG 1 cut(s) 81
EaeI YGGCCR 3 cut(s) 112, 299, 720
Eco130I CCWWGG 2 cut(s) 583, 811
Eco31I GGTCTC 1 cut(s) 47
Eco47I GGWCC 1 cut(s) 68
Eco57I CTGAAG 1 cut(s) 728
EcoRI GAATTC 1 cut(s) 347
EcoRII CCWGG 1 cut(s) 64
EcoT14I CCWWGG 2 cut(s) 583, 811
ErhI CCWWGG 2 cut(s) 583, 811
FaeI CATG 6 cut(s) 241, 292, 409, 599, 679, 706
FaqI GGGAC 1 cut(s) 676
FatI CATG 6 cut(s) 237, 288, 405, 595, 675, 702
Fnu4HI GCNGC 4 cut(s) 112, 216, 302, 508
Fsp4HI GCNGC 4 cut(s) 112, 216, 302, 508
FspBI CTAG 5 cut(s) 200, 305, 453, 771, 807
GluI GCNGC 4 cut(s) 112, 216, 302, 508
GsuI CTGGAG 1 cut(s) 185
HaeIII GGCC 5 cut(s) 114, 301, 315, 582, 722
Hin1II CATG 6 cut(s) 241, 292, 409, 599, 679, 706
HinfI GANTC 5 cut(s) 53, 120, 318, 632, 725
HphI GGTGA 1 cut(s) 641
Hpy166II GTNNAC 1 cut(s) 28
Hpy188I TCNGA 4 cut(s) 129, 346, 637, 747
Hpy188III TCNNGA 2 cut(s) 50, 76
Hpy8I GTNNAC 1 cut(s) 28
Hpy99I CGWCG 1 cut(s) 82
HpyAV CCTTC 1 cut(s) 752
HpyCH4III ACNGT 1 cut(s) 342
HpyCH4IV ACGT 4 cut(s) 5, 80, 393, 418
HpyCH4V TGCA 5 cut(s) 9, 218, 358, 675, 684
HpyF10VI GCNNNNNNNGC 6 cut(s) 238, 298, 681, 747, 772, 807
HpyF3I CTNAG 5 cut(s) 107, 143, 255, 466, 776
HpySE526I ACGT 4 cut(s) 5, 80, 393, 418
Hsp92II CATG 6 cut(s) 241, 292, 409, 599, 679, 706
Kzo9I GATC 2 cut(s) 34, 480
Lsp1109I GCAGC 1 cut(s) 202
LweI GCATC 1 cut(s) 227
MaeI CTAG 5 cut(s) 200, 305, 453, 771, 807
MaeII ACGT 4 cut(s) 5, 80, 393, 418
MaeIII GTNAC 3 cut(s) 250, 284, 607
MalI GATC 2 cut(s) 36, 482
MboI GATC 2 cut(s) 34, 480
MhlI GDGCHC 1 cut(s) 752
MluCI AATT 3 cut(s) 172, 347, 424
MlyI GAGTC 2 cut(s) 47, 734
MnlI CCTC 5 cut(s) 14, 57, 100, 376, 755
MseI TTAA 5 cut(s) 156, 171, 648, 657, 817
MspA1I CMGCKG 3 cut(s) 111, 470, 510
MspCI CTTAAG 1 cut(s) 155
MspR9I CCNGG 1 cut(s) 66
MvaI CCWGG 1 cut(s) 66
MwoI GCNNNNNNNGC 6 cut(s) 238, 298, 681, 747, 772, 807
NdeII GATC 2 cut(s) 34, 480
NlaIII CATG 6 cut(s) 241, 292, 409, 599, 679, 706
NlaIV GGNNCC 1 cut(s) 693
NmeAIII GCCGAG 1 cut(s) 748
NmuCI GTSAC 1 cut(s) 250
NspI RCATGY 2 cut(s) 241, 292
PcsI WCGNNNNNNNCGW 1 cut(s) 633
PfeI GAWTC 3 cut(s) 120, 318, 632
PkrI GCNGC 4 cut(s) 113, 217, 303, 509
PleI GAGTC 2 cut(s) 47, 733
PpsI GAGTC 2 cut(s) 47, 733
Ppu21I YACGTR 1 cut(s) 419
PshAI GACNNNNGTC 1 cut(s) 275
PshBI ATTAAT 1 cut(s) 171
Psp6I CCWGG 1 cut(s) 64
PspGI CCWGG 1 cut(s) 64
PspN4I GGNNCC 1 cut(s) 693
PspPI GGNCC 1 cut(s) 68
PstNI CAGNNNCTG 1 cut(s) 510
PvuII CAGCTG 1 cut(s) 470
RsaI GTAC 4 cut(s) 102, 440, 457, 544
RsaNI GTAC 4 cut(s) 101, 439, 456, 543
SaqAI TTAA 5 cut(s) 156, 171, 648, 657, 817
SatI GCNGC 4 cut(s) 112, 216, 302, 508
Sau3AI GATC 2 cut(s) 34, 480
Sau96I GGNCC 1 cut(s) 68
ScaI AGTACT 1 cut(s) 457
SchI GAGTC 2 cut(s) 47, 734
ScrFI CCNGG 1 cut(s) 66
SduI GDGCHC 1 cut(s) 752
SfaNI GCATC 1 cut(s) 227
SinI GGWCC 1 cut(s) 68
SmlI CTYRAG 4 cut(s) 93, 155, 227, 524
SmoI CTYRAG 4 cut(s) 93, 155, 227, 524
Sse9I AATT 3 cut(s) 172, 347, 424
SsiI CCGC 3 cut(s) 111, 302, 508
SspMI CTAG 5 cut(s) 200, 305, 453, 771, 807
StyD4I CCNGG 1 cut(s) 64
StyI CCWWGG 2 cut(s) 583, 811
TaaI ACNGT 1 cut(s) 342
TaiI ACGT 4 cut(s) 8, 83, 396, 421
TaqI TCGA 4 cut(s) 321, 531, 537, 558
TaqII GACCGA 1 cut(s) 238
TasI AATT 3 cut(s) 172, 347, 424
TatI WGTACW 3 cut(s) 100, 438, 455
TauI GCSGC 3 cut(s) 114, 304, 510
TfiI GAWTC 3 cut(s) 120, 318, 632
Tru1I TTAA 5 cut(s) 156, 171, 648, 657, 817
Tru9I TTAA 5 cut(s) 156, 171, 648, 657, 817
TscAI CASTG 1 cut(s) 345
TseFI GTSAC 1 cut(s) 250
TseI GCWGC 1 cut(s) 215
Tsp45I GTSAC 1 cut(s) 250
TspRI CASTG 1 cut(s) 345
Vha464I CTTAAG 1 cut(s) 155
VpaK11BI GGWCC 1 cut(s) 68
VspI ATTAAT 1 cut(s) 171
XapI RAATTY 1 cut(s) 347
XceI RCATGY 2 cut(s) 241, 292
XspI CTAG 5 cut(s) 200, 305, 453, 771, 807
ZrmI AGTACT 1 cut(s) 457
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.