Rw1G010310

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000160
Physical Location & Seq
Forward (+)
23023797 .. 23024318
522 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G010310.1

Sequence Viewer

Length: 480 bp
ATGGGAGGCCCTGTCACGGAGCTTGTCAATGATTTTGGCATCCAATTCATCCACAGCACTCCGTATTACGCTCAATCTAATGGTCAAGCGGAGGCTAGCAATAAGACAATCATTACCTTACTGAAGAAGATGCGACAATGGCACGATACTTTGTATGAGACGCTATGGGCCTATCGCACTTCTAAAAGGAATCCCACCGTAACAGCGCCATACTCACTCATGTTTGGTCATGACGCTGTCTTACCGTTAGAAATTAACGTTCATTCCCTACGCGCAATGTGGCAGGAACATGAAGATTTAAGCGAGCAACGCTTGGCGGCTTTGGATAATTTGGTAATGGAAAAACAGCGTATCGCTCGCACCTATGATAAGAGGACCCGTGGTCGTAGTTACAAAGAAGGCGACCTCGTTTGGAAGGCTGTTTTACCCCTTGGCGAAAAGTTGACCGGTCGGGGTAAATGGACGCCACGATGGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

159

Amino Acids

18.46

Weight (kDa)

9.33

Isoelectric Point (pI)

38.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000160)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11612 FvH4_2g25851 FvH4_3g22802 FvH4_3g22805 FvH4_3g31361 FvH4_3g31382 FvH4_4g05272 FvH4_4g05273 FvH4_4g14567 FvH4_4g15161 FvH4_5g22540 FvH4_6g13113 FvH4_6g31923 FvH4_6g31924 FvH4_6g33651 FvH4_6g45122 FvH4_7g03662
pyrus_communis pycom01g04240 pycom01g24010 pycom02g18210 pycom02g19420 pycom05g06510 pycom09g15750 pycom09g18940 pycom12g02580 pycom12g03100 pycom12g08310 pycom13g22710 pycom13g28060 pycom16g18340 pycom16g18350 pycom16g24880 pycom16g26240 pycom461g00260 pycom520g00980 pycom520g01320
rosa_chinensis RchiOBHm_Chr1g0320731 RchiOBHm_Chr2g0102771 RchiOBHm_Chr3g0462151 RchiOBHm_Chr5g0038141 RchiOBHm_Chr5g0069371 RchiOBHm_Chr7g0239101
rosa_multiflora Rmu_co8038252.1_g000001 Rmu_co8138412.1_g000001 Rmu_co8331087.1_g000001 Rmu_co8479311.1_g000001 Rmu_sc0000112.1_g000018 Rmu_sc0000346.1_g000012 Rmu_sc0002102.1_g000002 Rmu_sc0003505.1_g000013 Rmu_sc0004249.1_g000007 Rmu_sc0004448.1_g000010 Rmu_sc0004594.1_g000011 Rmu_sc0004915.1_g000010 Rmu_sc0008019.1_g000019 Rmu_sc0008303.1_g000001 Rmu_sc0008355.1_g000005 Rmu_sc0009253.1_g000018 Rmu_sc0010211.1_g000002 Rmu_sc0010252.1_g000009 Rmu_sc0011534.1_g000008 Rmu_sc0014811.1_g000009 Rmu_sc0019475.1_g000001 Rmu_sc0024897.1_g000001 Rmu_sc0024898.1_g000001 Rmu_sc0031791.1_g000001 Rmu_sc0038715.1_g000001
rosa_roxburghii Rroxscaffold_165G00436940 Rroxscaffold_174G00435270 Rroxscaffold_177G00434330 Rroxscaffold_177G00434340 Rroxscaffold_177G00434350 Rroxscaffold_1G00002160 Rroxscaffold_1G00025260 Rroxscaffold_1G00042950 Rroxscaffold_1G00068010 Rroxscaffold_2G00107530 Rroxscaffold_3G00221190 Rroxscaffold_3G00221520 Rroxscaffold_3G00223200 Rroxscaffold_4G00322230 Rroxscaffold_4G00331810 Rroxscaffold_5G00385150 Rroxscaffold_5G00387510 Rroxscaffold_6G00410520 Rroxscaffold_6G00423360 Rroxscaffold_6G00423370 Rroxscaffold_6G00429210 Rroxscaffold_7G00158300 Rroxscaffold_7G00163480 Rroxscaffold_7G00171410 Rroxscaffold_7G00178940 Rroxscaffold_7G00199480 Rroxscaffold_7G00205630 Rroxscaffold_7G00207440
rosa_rugosa Rorug01G0056400 Rorug04G0063900 Rorug05G0251400 Rorug07G0221900
rosa_samantha Rh1DG169400 Rh2AG292900 Rh2DG519200 Rh4DG260600 Rh5AG042600 Rh6BG117500
rosa_wichuraiana Rw0G001900 Rw0G005150 Rw0G006380 Rw0G015140 Rw0G016320 Rw0G019440 Rw0G019840 Rw0G023740 Rw1G001590 Rw1G002180 Rw1G003560 Rw1G004280 Rw1G006110 Rw1G006680 Rw1G007920 Rw1G008480 Rw1G009120 Rw1G010310 Rw1G014900 Rw1G019650 Rw1G022070 Rw1G022170 Rw1G041570 Rw2G002740 Rw2G005760 Rw2G032370 Rw2G046770 Rw2G050600 Rw2G051420 Rw3G015930 Rw3G016280 Rw3G019580 Rw3G028420 Rw4G003430 Rw4G005350 Rw4G007530 Rw4G008150 Rw4G009580 Rw4G010250 Rw4G015800 Rw4G017000 Rw4G017910 Rw4G018510 Rw4G019700 Rw4G031010 Rw5G012650 Rw5G020140 Rw5G022060 Rw5G034420 Rw5G035560 Rw5G043010 Rw5G046750 Rw5G047340 Rw5G049500 Rw6G001390 Rw6G002210 Rw6G004530 Rw6G004770 Rw6G005100 Rw6G005890 Rw6G011860 Rw6G014680 Rw6G019480 Rw6G028970 Rw6G033800 Rw7G013050 Rw7G014800 Rw7G025760 Rw7G025850 Rw7G026730 Rw7G026870 Rw7G036330 Rw7G036430 Rw7G039320 Rw7G039510 Rw7G039560 Rw7G041370 Rw7G042050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 273
AciI CCGC 2 cut(s) 89, 317
AclI AACGTT 1 cut(s) 258
AcuI CTGAAG 1 cut(s) 143
AcyI GRCGYC 1 cut(s) 464
AfiI CCNNNNNNNGG 1 cut(s) 16
AgeI ACCGGT 1 cut(s) 446
AhdI GACNNNNNGTC 1 cut(s) 381
AluBI AGCT 1 cut(s) 22
AluI AGCT 1 cut(s) 22
Alw26I GTCTC 1 cut(s) 152
AoxI GGCC 2 cut(s) 7, 168
AsiGI ACCGGT 1 cut(s) 446
AspLEI GCGC 2 cut(s) 208, 275
AspS9I GGNCC 3 cut(s) 8, 168, 375
AsuNHI GCTAGC 1 cut(s) 95
AvaII GGWCC 1 cut(s) 375
BccI CCATC 1 cut(s) 465
BcoDI GTCTC 1 cut(s) 152
BfaI CTAG 1 cut(s) 96
BfoI RGCGCY 1 cut(s) 209
BisI GCNGC 1 cut(s) 318
BlsI GCNGC 1 cut(s) 319
Bme18I GGWCC 1 cut(s) 375
BmeRI GACNNNNNGTC 1 cut(s) 381
BmgT120I GGNCC 3 cut(s) 8, 168, 375
BmiI GGNNCC 1 cut(s) 377
BmsI GCATC 2 cut(s) 48, 120
BmtI GCTAGC 1 cut(s) 99
BsaHI GRCGYC 1 cut(s) 464
BsaJI CCNNGG 2 cut(s) 379, 430
BsaWI WCCGGW 1 cut(s) 446
BsaXI ACNNNNNCTCC 1 cut(s) 27
Bsc4I CCNNNNNNNGG 1 cut(s) 16
Bse118I RCCGGY 1 cut(s) 446
Bse3DI GCAATG 1 cut(s) 282
BseDI CCNNGG 2 cut(s) 379, 430
BseGI GGATG 2 cut(s) 39, 48
BseLI CCNNNNNNNGG 1 cut(s) 16
BseMI GCAATG 1 cut(s) 282
Bsh1236I CGCG 1 cut(s) 273
Bsh1285I CGRYCG 1 cut(s) 451
BshFI GGCC 2 cut(s) 9, 170
BshTI ACCGGT 1 cut(s) 446
BsiEI CGRYCG 1 cut(s) 451
BsiSI CCGG 1 cut(s) 447
BslI CCNNNNNNNGG 1 cut(s) 16
BsmAI GTCTC 1 cut(s) 152
BsmBI CGTCTC 1 cut(s) 152
BsnI GGCC 2 cut(s) 9, 170
BspACI CCGC 2 cut(s) 89, 317
BspANI GGCC 2 cut(s) 9, 170
BspFNI CGCG 1 cut(s) 273
BspHI TCATGA 1 cut(s) 229
BspLI GGNNCC 1 cut(s) 377
BspOI GCTAGC 1 cut(s) 99
BsrDI GCAATG 1 cut(s) 282
BsrFI RCCGGY 1 cut(s) 446
BssAI RCCGGY 1 cut(s) 446
BssECI CCNNGG 2 cut(s) 379, 430
BssNI GRCGYC 1 cut(s) 464
BssT1I CCWWGG 1 cut(s) 430
Bst4CI ACNGT 2 cut(s) 199, 246
BstACI GRCGYC 1 cut(s) 464
BstC8I GCNNGC 3 cut(s) 97, 305, 358
BstDSI CCRYGG 1 cut(s) 379
BstF5I GGATG 2 cut(s) 39, 48
BstFNI CGCG 1 cut(s) 273
BstH2I RGCGCY 1 cut(s) 209
BstHHI GCGC 2 cut(s) 208, 275
BstMAI GTCTC 1 cut(s) 152
BstMCI CGRYCG 1 cut(s) 451
BstMWI GCNNNNNNNGC 2 cut(s) 139, 309
BstUI CGCG 1 cut(s) 273
BsuRI GGCC 2 cut(s) 9, 170
BtgI CCRYGG 1 cut(s) 379
BtsCI GGATG 2 cut(s) 39, 48
Cac8I GCNNGC 3 cut(s) 97, 305, 358
CciI TCATGA 1 cut(s) 229
CfoI GCGC 2 cut(s) 208, 275
Cfr10I RCCGGY 1 cut(s) 446
Cfr13I GGNCC 3 cut(s) 8, 168, 375
CseI GACGC 3 cut(s) 169, 242, 472
CspAI ACCGGT 1 cut(s) 446
CviAII CATG 3 cut(s) 220, 230, 290
CviJI RGCY 6 cut(s) 9, 22, 95, 170, 320, 419
CviKI_1 RGCY 6 cut(s) 9, 22, 95, 170, 320, 419
DriI GACNNNNNGTC 1 cut(s) 381
Eam1105I GACNNNNNGTC 1 cut(s) 381
Eco130I CCWWGG 1 cut(s) 430
Eco47I GGWCC 1 cut(s) 375
Eco57I CTGAAG 1 cut(s) 143
EcoO109I RGGNCCY 2 cut(s) 8, 375
EcoT14I CCWWGG 1 cut(s) 430
ErhI CCWWGG 1 cut(s) 430
Esp3I CGTCTC 1 cut(s) 152
FaeI CATG 3 cut(s) 223, 233, 293
FaiI YATR 7 cut(s) 156, 166, 211, 221, 231, 291, 366
FatI CATG 3 cut(s) 219, 229, 289
Fnu4HI GCNGC 1 cut(s) 318
FokI GGATG 2 cut(s) 26, 35
Fsp4HI GCNGC 1 cut(s) 318
FspBI CTAG 1 cut(s) 96
GlaI GCGC 2 cut(s) 207, 274
GluI GCNGC 1 cut(s) 318
HaeII RGCGCY 1 cut(s) 209
HaeIII GGCC 2 cut(s) 9, 170
HapII CCGG 1 cut(s) 447
HgaI GACGC 3 cut(s) 169, 242, 472
HhaI GCGC 2 cut(s) 208, 275
Hin1I GRCGYC 1 cut(s) 464
Hin1II CATG 3 cut(s) 223, 233, 293
Hin6I GCGC 2 cut(s) 206, 273
HinP1I GCGC 2 cut(s) 206, 273
HincII GTYRAC 1 cut(s) 444
HindII GTYRAC 1 cut(s) 444
HinfI GANTC 1 cut(s) 190
HpaII CCGG 1 cut(s) 447
Hpy166II GTNNAC 1 cut(s) 444
Hpy188III TCNNGA 1 cut(s) 230
Hpy8I GTNNAC 1 cut(s) 444
HpyAV CCTTC 2 cut(s) 392, 409
HpyCH4III ACNGT 2 cut(s) 199, 246
HpyCH4IV ACGT 1 cut(s) 258
HpyF10VI GCNNNNNNNGC 2 cut(s) 139, 309
HpySE526I ACGT 1 cut(s) 258
Hsp92I GRCGYC 1 cut(s) 464
Hsp92II CATG 3 cut(s) 223, 233, 293
HspAI GCGC 2 cut(s) 206, 273
LmnI GCTCC 1 cut(s) 19
LpnPI CCDG 3 cut(s) 24, 269, 460
LweI GCATC 2 cut(s) 48, 120
MaeI CTAG 1 cut(s) 96
MaeII ACGT 1 cut(s) 258
MaeIII GTNAC 3 cut(s) 13, 199, 389
MboII GAAGA 3 cut(s) 136, 139, 305
MluCI AATT 3 cut(s) 44, 252, 328
MnlI CCTC 3 cut(s) 85, 366, 416
MseI TTAA 2 cut(s) 255, 299
MspI CCGG 1 cut(s) 447
MvnI CGCG 1 cut(s) 273
MwoI GCNNNNNNNGC 2 cut(s) 139, 309
NheI GCTAGC 1 cut(s) 95
NlaIII CATG 3 cut(s) 223, 233, 293
NlaIV GGNNCC 1 cut(s) 377
NmuCI GTSAC 1 cut(s) 13
PagI TCATGA 1 cut(s) 229
PfeI GAWTC 1 cut(s) 190
PflFI GACNNNGTC 1 cut(s) 236
PinAI ACCGGT 1 cut(s) 446
PkrI GCNGC 1 cut(s) 319
PpuMI RGGWCCY 1 cut(s) 375
Psp1406I AACGTT 1 cut(s) 258
Psp5II RGGWCCY 1 cut(s) 375
PspN4I GGNNCC 1 cut(s) 377
PspPI GGNCC 3 cut(s) 8, 168, 375
PspPPI RGGWCCY 1 cut(s) 375
PsyI GACNNNGTC 1 cut(s) 236
SaqAI TTAA 2 cut(s) 255, 299
SatI GCNGC 1 cut(s) 318
Sau96I GGNCC 3 cut(s) 8, 168, 375
SetI ASST 5 cut(s) 24, 119, 261, 365, 408
SfaNI GCATC 2 cut(s) 48, 120
SinI GGWCC 1 cut(s) 375
Sse9I AATT 3 cut(s) 44, 252, 328
SsiI CCGC 2 cut(s) 89, 317
SspMI CTAG 1 cut(s) 96
StyI CCWWGG 1 cut(s) 430
TaaI ACNGT 2 cut(s) 199, 246
TaiI ACGT 1 cut(s) 261
TasI AATT 3 cut(s) 44, 252, 328
TauI GCSGC 1 cut(s) 320
TfiI GAWTC 1 cut(s) 190
Tru1I TTAA 2 cut(s) 255, 299
Tru9I TTAA 2 cut(s) 255, 299
TseFI GTSAC 1 cut(s) 13
Tsp45I GTSAC 1 cut(s) 13
TspDTI ATGAA 3 cut(s) 37, 251, 306
TspGWI ACGGA 2 cut(s) 32, 51
Tth111I GACNNNGTC 1 cut(s) 236
VpaK11BI GGWCC 1 cut(s) 375
XspI CTAG 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.