Rorug05G0251400

Uncharacterized protein K02A2.6-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
27550051 .. 27553635
3585 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0251400.1

Sequence Viewer

Length: 765 bp
ATGAATCACCCACAACCCCAAGACCCCGCCGACCCCCAACTCCCCCAAATCAGAATCCACCACCCCAACTCTCCCCGCCACCACTCCTCCCCCTCCGGCGCCACCCCCACCCCCACCGCCGGCGCCCGCCGCAAGCTCGGCGTCGCCGTCGACCTCTCCGACGAGAGCGCCTACGCCGTCCGCTGGGCCGTCGATCACTACATCCGCCCCGGCGACGCCGTCATCCTCCTCCACGTCAGCCCTACCTCCGTACTCTTCGGCGCCGATTGGGGCTCCACCGACCTCTCCCTCGCCGCCAACGACGAGCTTGTCGACCCCTCCCACGACGTCCACAACCACCACTCCAAGCAGAACCTCGAGCACGATTTCGATGCCTTCACCGCCGCCAAGGCCGGCGATCTCGCTCGCCCCTTGAAGGAGGCTCAGATTCCCTACAAGATCCACATCGTCAAGGACCACGATATGAAGGAGCGGCTGTGCCTGGAGGTCGAGAGGTTAGGGCTCAGTGCGGTCATCATGGGGAGCCGAGGCTTCGGGGCGGTGAAGCGTGGCAGTGATGGTAGGCTTGGCAGTGTGAGCGATTATTGTGTGCATCACTGTGTTTGTCCTGTTGTAGTTGTACGTTATCCTGAGGATAAGGATGATGACAATGGTGGCGGAGCTCCTGCCGCTGCGGCTGCGGCTGCGGCTGTGGTTGCCGTTAAGGAGGAAGAGGCTGTGATCAAGCCCGTCCCCGCCGAGAAAGAGCATCTTAAAGATGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

254

Amino Acids

27.29

Weight (kDa)

5.9

Isoelectric Point (pI)

41.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 44 - 208 5.1e-24 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000160)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11612 FvH4_2g25851 FvH4_3g22802 FvH4_3g22805 FvH4_3g31361 FvH4_3g31382 FvH4_4g05272 FvH4_4g05273 FvH4_4g14567 FvH4_4g15161 FvH4_5g22540 FvH4_6g13113 FvH4_6g31923 FvH4_6g31924 FvH4_6g33651 FvH4_6g45122 FvH4_7g03662
pyrus_communis pycom01g04240 pycom01g24010 pycom02g18210 pycom02g19420 pycom05g06510 pycom09g15750 pycom09g18940 pycom12g02580 pycom12g03100 pycom12g08310 pycom13g22710 pycom13g28060 pycom16g18340 pycom16g18350 pycom16g24880 pycom16g26240 pycom461g00260 pycom520g00980 pycom520g01320
rosa_chinensis RchiOBHm_Chr1g0320731 RchiOBHm_Chr2g0102771 RchiOBHm_Chr3g0462151 RchiOBHm_Chr5g0038141 RchiOBHm_Chr5g0069371 RchiOBHm_Chr7g0239101
rosa_multiflora Rmu_co8038252.1_g000001 Rmu_co8138412.1_g000001 Rmu_co8331087.1_g000001 Rmu_co8479311.1_g000001 Rmu_sc0000112.1_g000018 Rmu_sc0000346.1_g000012 Rmu_sc0002102.1_g000002 Rmu_sc0003505.1_g000013 Rmu_sc0004249.1_g000007 Rmu_sc0004448.1_g000010 Rmu_sc0004594.1_g000011 Rmu_sc0004915.1_g000010 Rmu_sc0008019.1_g000019 Rmu_sc0008303.1_g000001 Rmu_sc0008355.1_g000005 Rmu_sc0009253.1_g000018 Rmu_sc0010211.1_g000002 Rmu_sc0010252.1_g000009 Rmu_sc0011534.1_g000008 Rmu_sc0014811.1_g000009 Rmu_sc0019475.1_g000001 Rmu_sc0024897.1_g000001 Rmu_sc0024898.1_g000001 Rmu_sc0031791.1_g000001 Rmu_sc0038715.1_g000001
rosa_roxburghii Rroxscaffold_165G00436940 Rroxscaffold_174G00435270 Rroxscaffold_177G00434330 Rroxscaffold_177G00434340 Rroxscaffold_177G00434350 Rroxscaffold_1G00002160 Rroxscaffold_1G00025260 Rroxscaffold_1G00042950 Rroxscaffold_1G00068010 Rroxscaffold_2G00107530 Rroxscaffold_3G00221190 Rroxscaffold_3G00221520 Rroxscaffold_3G00223200 Rroxscaffold_4G00322230 Rroxscaffold_4G00331810 Rroxscaffold_5G00385150 Rroxscaffold_5G00387510 Rroxscaffold_6G00410520 Rroxscaffold_6G00423360 Rroxscaffold_6G00423370 Rroxscaffold_6G00429210 Rroxscaffold_7G00158300 Rroxscaffold_7G00163480 Rroxscaffold_7G00171410 Rroxscaffold_7G00178940 Rroxscaffold_7G00199480 Rroxscaffold_7G00205630 Rroxscaffold_7G00207440
rosa_rugosa Rorug01G0056400 Rorug04G0063900 Rorug05G0251400 Rorug07G0221900
rosa_samantha Rh1DG169400 Rh2AG292900 Rh2DG519200 Rh4DG260600 Rh5AG042600 Rh6BG117500
rosa_wichuraiana Rw0G001900 Rw0G005150 Rw0G006380 Rw0G015140 Rw0G016320 Rw0G019440 Rw0G019840 Rw0G023740 Rw1G001590 Rw1G002180 Rw1G003560 Rw1G004280 Rw1G006110 Rw1G006680 Rw1G007920 Rw1G008480 Rw1G009120 Rw1G010310 Rw1G014900 Rw1G019650 Rw1G022070 Rw1G022170 Rw1G041570 Rw2G002740 Rw2G005760 Rw2G032370 Rw2G046770 Rw2G050600 Rw2G051420 Rw3G015930 Rw3G016280 Rw3G019580 Rw3G028420 Rw4G003430 Rw4G005350 Rw4G007530 Rw4G008150 Rw4G009580 Rw4G010250 Rw4G015800 Rw4G017000 Rw4G017910 Rw4G018510 Rw4G019700 Rw4G031010 Rw5G012650 Rw5G020140 Rw5G022060 Rw5G034420 Rw5G035560 Rw5G043010 Rw5G046750 Rw5G047340 Rw5G049500 Rw6G001390 Rw6G002210 Rw6G004530 Rw6G004770 Rw6G005100 Rw6G005890 Rw6G011860 Rw6G014680 Rw6G019480 Rw6G028970 Rw6G033800 Rw7G013050 Rw7G014800 Rw7G025760 Rw7G025850 Rw7G026730 Rw7G026870 Rw7G036330 Rw7G036430 Rw7G039320 Rw7G039510 Rw7G039560 Rw7G041370 Rw7G042050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 308
AatII GACGTC 1 cut(s) 330
AccB1I GGYRCC 3 cut(s) 98, 122, 260
AccBSI CCGCTC 1 cut(s) 472
AccI GTMKAC 2 cut(s) 150, 312
AclWI GGATC 1 cut(s) 433
AcyI GRCGYC 6 cut(s) 99, 123, 141, 216, 261, 327
AfaI GTAC 2 cut(s) 252, 621
AfiI CCNNNNNNNGG 3 cut(s) 119, 183, 415
AgsI TTSAA 1 cut(s) 415
AjiI CACGTC 1 cut(s) 235
AjnI CCWGG 1 cut(s) 480
AluBI AGCT 3 cut(s) 136, 307, 662
AluI AGCT 3 cut(s) 136, 307, 662
Alw21I GWGCWC 2 cut(s) 363, 664
AlwI GGATC 1 cut(s) 433
Ama87I CYCGRG 1 cut(s) 356
AoxI GGCC 2 cut(s) 186, 390
ApeKI GCWGC 3 cut(s) 671, 677, 683
AspLEI GCGC 4 cut(s) 101, 125, 170, 263
AspS9I GGNCC 2 cut(s) 186, 454
AsuC2I CCSGG 1 cut(s) 210
AsuHPI GGTGA 2 cut(s) 370, 553
AvaI CYCGRG 1 cut(s) 356
AvaII GGWCC 1 cut(s) 454
AxyI CCTNAGG 1 cut(s) 630
BanI GGYRCC 3 cut(s) 98, 122, 260
BanII GRGCYC 3 cut(s) 275, 504, 664
Bbv12I GWGCWC 2 cut(s) 363, 664
BbvI GCAGC 3 cut(s) 658, 664, 670
BccI CCATC 1 cut(s) 551
BceAI ACGGC 5 cut(s) 131, 161, 173, 203, 683
BcgI CGANNNNNNTGC 2 cut(s) 353, 387
BciT130I CCWGG 1 cut(s) 482
BclI TGATCA 1 cut(s) 720
BcnI CCSGG 1 cut(s) 210
BfoI RGCGCY 4 cut(s) 102, 126, 171, 264
BglI GCCNNNNNGGC 2 cut(s) 389, 674
Bme1390I CCNGG 2 cut(s) 210, 482
Bme18I GGWCC 1 cut(s) 454
BmeT110I CYCGRG 1 cut(s) 356
BmgBI CACGTC 1 cut(s) 235
BmgT120I GGNCC 2 cut(s) 186, 454
BmiI GGNNCC 5 cut(s) 100, 124, 262, 274, 524
BmrFI CCNGG 2 cut(s) 210, 482
BmsI GCATC 4 cut(s) 361, 601, 748, 757
BpmI CTGGAG 1 cut(s) 503
BpuMI CCSGG 1 cut(s) 210
BsaBI GATNNNNATC 1 cut(s) 443
BsaHI GRCGYC 6 cut(s) 99, 123, 141, 216, 261, 327
BsaJI CCNNGG 3 cut(s) 208, 387, 526
BsaXI ACNNNNNCTCC 6 cut(s) 71, 101, 326, 356, 461, 491
Bsc4I CCNNNNNNNGG 3 cut(s) 119, 183, 415
Bse118I RCCGGY 2 cut(s) 119, 392
Bse21I CCTNAGG 1 cut(s) 630
Bse8I GATNNNNATC 1 cut(s) 443
BseBI CCWGG 1 cut(s) 482
BseDI CCNNGG 3 cut(s) 208, 387, 526
BseGI GGATG 3 cut(s) 201, 222, 646
BseJI GATNNNNATC 1 cut(s) 443
BseLI CCNNNNNNNGG 3 cut(s) 119, 183, 415
BseMII CTCAG 3 cut(s) 437, 517, 621
BseRI GAGGAG 2 cut(s) 76, 218
BseXI GCAGC 3 cut(s) 658, 664, 670
BseYI CCCAGC 1 cut(s) 183
BshFI GGCC 2 cut(s) 188, 392
BshNI GGYRCC 3 cut(s) 98, 122, 260
BsiHKAI GWGCWC 2 cut(s) 363, 664
BsiHKCI CYCGRG 1 cut(s) 356
BsiSI CCGG 4 cut(s) 96, 120, 210, 393
BslFI GGGAC 1 cut(s) 716
BslI CCNNNNNNNGG 3 cut(s) 119, 183, 415
BsmFI GGGAC 1 cut(s) 716
BsnI GGCC 2 cut(s) 188, 392
BsoBI CYCGRG 1 cut(s) 356
Bsp1286I GDGCHC 4 cut(s) 275, 363, 504, 664
Bsp143I GATC 4 cut(s) 193, 397, 438, 720
BspANI GGCC 2 cut(s) 188, 392
BspCNI CTCAG 3 cut(s) 436, 516, 622
BspLI GGNNCC 5 cut(s) 100, 124, 262, 274, 524
BspPI GGATC 1 cut(s) 433
BspT107I GGYRCC 3 cut(s) 98, 122, 260
BsrBI CCGCTC 1 cut(s) 472
BsrFI RCCGGY 2 cut(s) 119, 392
BssAI RCCGGY 2 cut(s) 119, 392
BssECI CCNNGG 3 cut(s) 208, 387, 526
BssMI GATC 4 cut(s) 193, 397, 438, 720
BssNI GRCGYC 6 cut(s) 99, 123, 141, 216, 261, 327
BssT1I CCWWGG 1 cut(s) 387
Bst2UI CCWGG 1 cut(s) 482
Bst4CI ACNGT 1 cut(s) 599
Bst6I CTCTTC 2 cut(s) 260, 705
BstACI GRCGYC 6 cut(s) 99, 123, 141, 216, 261, 327
BstC8I GCNNGC 5 cut(s) 121, 127, 134, 394, 406
BstDEI CTNAG 4 cut(s) 423, 503, 630, 762
BstF5I GGATG 3 cut(s) 201, 222, 646
BstH2I RGCGCY 4 cut(s) 102, 126, 171, 264
BstHHI GCGC 4 cut(s) 101, 125, 170, 263
BstKTI GATC 4 cut(s) 196, 400, 441, 723
BstMBI GATC 4 cut(s) 193, 397, 438, 720
BstNI CCWGG 1 cut(s) 482
BstSCI CCNGG 2 cut(s) 208, 480
BstV1I GCAGC 3 cut(s) 658, 664, 670
BstX2I RGATCY 1 cut(s) 438
BstYI RGATCY 1 cut(s) 438
Bsu36I CCTNAGG 1 cut(s) 630
BsuRI GGCC 2 cut(s) 188, 392
BtrI CACGTC 1 cut(s) 235
BtsCI GGATG 3 cut(s) 201, 222, 646
BtsI GCAGTG 2 cut(s) 559, 577
BtsIMutI CAGTG 4 cut(s) 511, 559, 577, 595
Cac8I GCNNGC 5 cut(s) 121, 127, 134, 394, 406
CfoI GCGC 4 cut(s) 101, 125, 170, 263
Cfr10I RCCGGY 2 cut(s) 119, 392
Cfr13I GGNCC 2 cut(s) 186, 454
CseI GACGC 2 cut(s) 130, 224
Csp6I GTAC 2 cut(s) 251, 620
CviAII CATG 1 cut(s) 517
CviQI GTAC 2 cut(s) 251, 620
DdeI CTNAG 4 cut(s) 423, 503, 630, 762
DinI GGCGCC 3 cut(s) 100, 124, 262
DpnI GATC 4 cut(s) 195, 399, 440, 722
DpnII GATC 4 cut(s) 193, 397, 438, 720
DrdI GACNNNNNNGTC 1 cut(s) 308
DseDI GACNNNNNNGTC 1 cut(s) 308
Eam1104I CTCTTC 2 cut(s) 260, 705
EarI CTCTTC 2 cut(s) 260, 705
EciI GGCGGA 2 cut(s) 194, 672
Ecl136II GAGCTC 1 cut(s) 662
Eco130I CCWWGG 1 cut(s) 387
Eco24I GRGCYC 3 cut(s) 275, 504, 664
Eco47I GGWCC 1 cut(s) 454
Eco53kI GAGCTC 1 cut(s) 662
Eco81I CCTNAGG 1 cut(s) 630
Eco88I CYCGRG 1 cut(s) 356
EcoICRI GAGCTC 1 cut(s) 662
EcoRII CCWGG 1 cut(s) 480
EcoT14I CCWWGG 1 cut(s) 387
EcoT38I GRGCYC 3 cut(s) 275, 504, 664
EgeI GGCGCC 3 cut(s) 100, 124, 262
EheI GGCGCC 3 cut(s) 100, 124, 262
ErhI CCWWGG 1 cut(s) 387
FaeI CATG 1 cut(s) 520
FaiI YATR 2 cut(s) 464, 518
FalI AAGNNNNNCTT 1 cut(s) 735
FaqI GGGAC 1 cut(s) 716
FatI CATG 1 cut(s) 516
FauI CCCGC 4 cut(s) 34, 83, 134, 742
FbaI TGATCA 1 cut(s) 720
FblI GTMKAC 2 cut(s) 150, 312
FokI GGATG 3 cut(s) 188, 209, 653
FriOI GRGCYC 3 cut(s) 275, 504, 664
GlaI GCGC 4 cut(s) 100, 124, 169, 262
GsaI CCCAGC 1 cut(s) 187
GsuI CTGGAG 1 cut(s) 503
HaeII RGCGCY 4 cut(s) 102, 126, 171, 264
HaeIII GGCC 2 cut(s) 188, 392
HapII CCGG 4 cut(s) 96, 120, 210, 393
HgaI GACGC 2 cut(s) 130, 224
HhaI GCGC 4 cut(s) 101, 125, 170, 263
Hin1I GRCGYC 6 cut(s) 99, 123, 141, 216, 261, 327
Hin1II CATG 1 cut(s) 520
Hin6I GCGC 4 cut(s) 99, 123, 168, 261
HinP1I GCGC 4 cut(s) 99, 123, 168, 261
HincII GTYRAC 2 cut(s) 151, 313
HindII GTYRAC 2 cut(s) 151, 313
HinfI GANTC 3 cut(s) 4, 54, 427
HpaII CCGG 4 cut(s) 96, 120, 210, 393
HphI GGTGA 2 cut(s) 370, 553
Hpy166II GTNNAC 3 cut(s) 151, 313, 331
Hpy188I TCNGA 3 cut(s) 53, 160, 426
Hpy188III TCNNGA 2 cut(s) 490, 629
Hpy8I GTNNAC 3 cut(s) 151, 313, 331
Hpy99I CGWCG 7 cut(s) 146, 152, 164, 194, 218, 305, 329
HpyAV CCTTC 3 cut(s) 385, 409, 460
HpyCH4III ACNGT 1 cut(s) 599
HpyCH4IV ACGT 3 cut(s) 234, 327, 622
HpyCH4V TGCA 1 cut(s) 592
HpyF3I CTNAG 4 cut(s) 423, 503, 630, 762
HpySE526I ACGT 3 cut(s) 234, 327, 622
Hsp92I GRCGYC 6 cut(s) 99, 123, 141, 216, 261, 327
Hsp92II CATG 1 cut(s) 520
HspAI GCGC 4 cut(s) 99, 123, 168, 261
KasI GGCGCC 3 cut(s) 98, 122, 260
KroI GCCGGC 2 cut(s) 119, 392
KroNI GCCGGC 2 cut(s) 121, 394
Ksp22I TGATCA 1 cut(s) 720
Kzo9I GATC 4 cut(s) 193, 397, 438, 720
LmnI GCTCC 5 cut(s) 278, 469, 522, 659, 667
Lsp1109I GCAGC 3 cut(s) 658, 664, 670
LweI GCATC 4 cut(s) 361, 601, 748, 757
MaeII ACGT 3 cut(s) 234, 327, 622
MalI GATC 4 cut(s) 195, 399, 440, 722
MbiI CCGCTC 1 cut(s) 472
MboI GATC 4 cut(s) 193, 397, 438, 720
MboII GAAGA 2 cut(s) 247, 722
MflI RGATCY 1 cut(s) 438
MhlI GDGCHC 4 cut(s) 275, 363, 504, 664
Mly113I GGCGCC 3 cut(s) 99, 123, 261
MmeI TCCRAC 1 cut(s) 183
MreI CGCCGGCG 1 cut(s) 119
MroNI GCCGGC 2 cut(s) 119, 392
MseI TTAA 2 cut(s) 702, 753
MslI CAYNNNNRTG 1 cut(s) 597
MspA1I CMGCKG 2 cut(s) 183, 671
MspI CCGG 4 cut(s) 96, 120, 210, 393
MspR9I CCNGG 2 cut(s) 210, 482
MvaI CCWGG 1 cut(s) 482
NaeI GCCGGC 2 cut(s) 121, 394
NarI GGCGCC 3 cut(s) 99, 123, 261
NciI CCSGG 1 cut(s) 210
NdeII GATC 4 cut(s) 193, 397, 438, 720
NgoMIV GCCGGC 2 cut(s) 119, 392
NlaIII CATG 1 cut(s) 520
NlaIV GGNNCC 5 cut(s) 100, 124, 262, 274, 524
NmeAIII GCCGAG 3 cut(s) 117, 551, 763
PaeR7I CTCGAG 1 cut(s) 356
PcsI WCGNNNNNNNCGW 4 cut(s) 144, 156, 297, 309
PdiI GCCGGC 2 cut(s) 121, 394
PfeI GAWTC 3 cut(s) 4, 54, 427
PflFI GACNNNGTC 1 cut(s) 218
PluTI GGCGCC 3 cut(s) 102, 126, 264
Psp124BI GAGCTC 1 cut(s) 664
Psp6I CCWGG 1 cut(s) 480
PspFI CCCAGC 1 cut(s) 183
PspGI CCWGG 1 cut(s) 480
PspN4I GGNNCC 5 cut(s) 100, 124, 262, 274, 524
PspPI GGNCC 2 cut(s) 186, 454
PspXI VCTCGAGB 1 cut(s) 356
PsuI RGATCY 1 cut(s) 438
PsyI GACNNNGTC 1 cut(s) 218
RsaI GTAC 2 cut(s) 252, 621
RsaNI GTAC 2 cut(s) 251, 620
RseI CAYNNNNRTG 1 cut(s) 597
SacI GAGCTC 1 cut(s) 664
SalI GTCGAC 2 cut(s) 149, 311
SaqAI TTAA 2 cut(s) 702, 753
Sau3AI GATC 4 cut(s) 193, 397, 438, 720
Sau96I GGNCC 2 cut(s) 186, 454
ScrFI CCNGG 2 cut(s) 210, 482
SduI GDGCHC 4 cut(s) 275, 363, 504, 664
SfaNI GCATC 4 cut(s) 361, 601, 748, 757
SfoI GGCGCC 3 cut(s) 100, 124, 262
Sfr274I CTCGAG 1 cut(s) 356
SgrAI CRCCGGYG 1 cut(s) 119
SinI GGWCC 1 cut(s) 454
SlaI CTCGAG 1 cut(s) 356
SmiMI CAYNNNNRTG 1 cut(s) 597
SmlI CTYRAG 1 cut(s) 356
SmoI CTYRAG 1 cut(s) 356
SspDI GGCGCC 3 cut(s) 98, 122, 260
SstI GAGCTC 1 cut(s) 664
StyD4I CCNGG 2 cut(s) 208, 480
StyI CCWWGG 1 cut(s) 387
TaaI ACNGT 1 cut(s) 599
TaiI ACGT 3 cut(s) 237, 330, 625
TaqI TCGA 6 cut(s) 150, 192, 312, 357, 369, 489
TauI GCSGC 8 cut(s) 132, 296, 386, 475, 671, 677, 683, 689
TfiI GAWTC 3 cut(s) 4, 54, 427
Tru1I TTAA 2 cut(s) 702, 753
Tru9I TTAA 2 cut(s) 702, 753
TscAI CASTG 4 cut(s) 511, 559, 577, 602
TseI GCWGC 3 cut(s) 671, 677, 683
TspDTI ATGAA 2 cut(s) 17, 479
TspGWI ACGGA 1 cut(s) 238
TspRI CASTG 4 cut(s) 511, 559, 577, 602
Tth111I GACNNNGTC 1 cut(s) 218
VpaK11BI GGWCC 1 cut(s) 454
XhoI CTCGAG 1 cut(s) 356
XmiI GTMKAC 2 cut(s) 150, 312
ZraI GACGTC 1 cut(s) 328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.