Rh2AG292900

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000160
Physical Location & Seq
Forward (+)
36073832 .. 36075537
1706 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG292900.1

Sequence Viewer

Length: 912 bp
ATGTTGGCTCAAGACAATGATCAAGGAAAAGAGCAAGCCATCCATTATTTGAGCAGAATCCTCACACCTGTTGAGATAAGATATTCGCCGATTGAAAAACTATGCCTCGTGCTCTACTTTTCGGCGATTAAATTACGACATTATATGTTACCATCAGTTGTTCATATAATTTCACAAACGGATTTAATTAAATATATGTTGACTCGACCGATCATCAAAGGCCGAATTGGAAAATGGACAATGGCGCTTTCTGAATTTACTTTCAAATACGTGGCCCAGAAGTCAGTCAAAGGCCAGGCATTGGCTCAATTTCTTGCTGACCACCCTTCTGTTGAAATTGAAGATATGGAGAACGTTGAAATAGATACTGCACAAGTCGGCCAGATGTATCACGAGCCTTGGCTACTATATTTTGATGGCTCAAGCACCAGTGACTCCGCCGGGGCAGGAATAGTGATTGAATCTCCAACCGGCCAAAAGCATCAATATGCCTTCAAACTGGACTTTAACTGCACAAACAACCAGGCTGAATATGAAGCCGTAATAATTGGCCTGGAAGTATTAGAAGAGCTTGGAGCAATAAGAGTTAAGGTGTTTGGGGACTCACTATTCGTCATCAATCAAATGCTCCAGGTTTTTAGATGTTCAAATCTCTCGTTGGCCACTTATTATGCCGCCGCACAACAACTGCTTAGTGTTTTCATAATGTGGAATTTCACCATCTTCTGCGAGAACTCAATCGTGAAGCGAATGAAATGGCTCAAATTGCTTCCGGCGTCAGCATTCCAGCGGGCCAGACTAACAAAATCATCACCATTGAGAGAAAATCATTGCCATCTTTGGCCGAGAGAGGTATGCCGGCCGATGTCTTTGAGCTTGACGTGCCACTTGGTGATTGGAGATTTTACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

303

Amino Acids

34.6

Weight (kDa)

7.1

Isoelectric Point (pI)

46.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RT_RNaseH PF17917 1 - 86 4.1e-14 RNase H-like domain found in reverse transcriptase
RT_RNaseH_2 PF17919 1 - 51 1.2e-07 RNase H-like domain found in reverse transcriptase
RNase_H PF00075 135 - 213 2e-07 RNase H
RVT_3 PF13456 138 - 235 1.5e-10 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000160)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11612 FvH4_2g25851 FvH4_3g22802 FvH4_3g22805 FvH4_3g31361 FvH4_3g31382 FvH4_4g05272 FvH4_4g05273 FvH4_4g14567 FvH4_4g15161 FvH4_5g22540 FvH4_6g13113 FvH4_6g31923 FvH4_6g31924 FvH4_6g33651 FvH4_6g45122 FvH4_7g03662
pyrus_communis pycom01g04240 pycom01g24010 pycom02g18210 pycom02g19420 pycom05g06510 pycom09g15750 pycom09g18940 pycom12g02580 pycom12g03100 pycom12g08310 pycom13g22710 pycom13g28060 pycom16g18340 pycom16g18350 pycom16g24880 pycom16g26240 pycom461g00260 pycom520g00980 pycom520g01320
rosa_chinensis RchiOBHm_Chr1g0320731 RchiOBHm_Chr2g0102771 RchiOBHm_Chr3g0462151 RchiOBHm_Chr5g0038141 RchiOBHm_Chr5g0069371 RchiOBHm_Chr7g0239101
rosa_multiflora Rmu_co8038252.1_g000001 Rmu_co8138412.1_g000001 Rmu_co8331087.1_g000001 Rmu_co8479311.1_g000001 Rmu_sc0000112.1_g000018 Rmu_sc0000346.1_g000012 Rmu_sc0002102.1_g000002 Rmu_sc0003505.1_g000013 Rmu_sc0004249.1_g000007 Rmu_sc0004448.1_g000010 Rmu_sc0004594.1_g000011 Rmu_sc0004915.1_g000010 Rmu_sc0008019.1_g000019 Rmu_sc0008303.1_g000001 Rmu_sc0008355.1_g000005 Rmu_sc0009253.1_g000018 Rmu_sc0010211.1_g000002 Rmu_sc0010252.1_g000009 Rmu_sc0011534.1_g000008 Rmu_sc0014811.1_g000009 Rmu_sc0019475.1_g000001 Rmu_sc0024897.1_g000001 Rmu_sc0024898.1_g000001 Rmu_sc0031791.1_g000001 Rmu_sc0038715.1_g000001
rosa_roxburghii Rroxscaffold_165G00436940 Rroxscaffold_174G00435270 Rroxscaffold_177G00434330 Rroxscaffold_177G00434340 Rroxscaffold_177G00434350 Rroxscaffold_1G00002160 Rroxscaffold_1G00025260 Rroxscaffold_1G00042950 Rroxscaffold_1G00068010 Rroxscaffold_2G00107530 Rroxscaffold_3G00221190 Rroxscaffold_3G00221520 Rroxscaffold_3G00223200 Rroxscaffold_4G00322230 Rroxscaffold_4G00331810 Rroxscaffold_5G00385150 Rroxscaffold_5G00387510 Rroxscaffold_6G00410520 Rroxscaffold_6G00423360 Rroxscaffold_6G00423370 Rroxscaffold_6G00429210 Rroxscaffold_7G00158300 Rroxscaffold_7G00163480 Rroxscaffold_7G00171410 Rroxscaffold_7G00178940 Rroxscaffold_7G00199480 Rroxscaffold_7G00205630 Rroxscaffold_7G00207440
rosa_rugosa Rorug01G0056400 Rorug04G0063900 Rorug05G0251400 Rorug07G0221900
rosa_samantha Rh1DG169400 Rh2AG292900 Rh2DG519200 Rh4DG260600 Rh5AG042600 Rh6BG117500
rosa_wichuraiana Rw0G001900 Rw0G005150 Rw0G006380 Rw0G015140 Rw0G016320 Rw0G019440 Rw0G019840 Rw0G023740 Rw1G001590 Rw1G002180 Rw1G003560 Rw1G004280 Rw1G006110 Rw1G006680 Rw1G007920 Rw1G008480 Rw1G009120 Rw1G010310 Rw1G014900 Rw1G019650 Rw1G022070 Rw1G022170 Rw1G041570 Rw2G002740 Rw2G005760 Rw2G032370 Rw2G046770 Rw2G050600 Rw2G051420 Rw3G015930 Rw3G016280 Rw3G019580 Rw3G028420 Rw4G003430 Rw4G005350 Rw4G007530 Rw4G008150 Rw4G009580 Rw4G010250 Rw4G015800 Rw4G017000 Rw4G017910 Rw4G018510 Rw4G019700 Rw4G031010 Rw5G012650 Rw5G020140 Rw5G022060 Rw5G034420 Rw5G035560 Rw5G043010 Rw5G046750 Rw5G047340 Rw5G049500 Rw6G001390 Rw6G002210 Rw6G004530 Rw6G004770 Rw6G005100 Rw6G005890 Rw6G011860 Rw6G014680 Rw6G019480 Rw6G028970 Rw6G033800 Rw7G013050 Rw7G014800 Rw7G025760 Rw7G025850 Rw7G026730 Rw7G026870 Rw7G036330 Rw7G036430 Rw7G039320 Rw7G039510 Rw7G039560 Rw7G041370 Rw7G042050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 301
AciI CCGC 4 cut(s) 438, 675, 678, 790
AclI AACGTT 1 cut(s) 354
AcoI YGGCCR 5 cut(s) 379, 472, 660, 842, 860
AcsI RAATTY 2 cut(s) 254, 712
AcyI GRCGYC 1 cut(s) 776
AdeI CACNNNGTG 1 cut(s) 892
AfiI CCNNNNNNNGG 1 cut(s) 301
AgsI TTSAA 8 cut(s) 95, 265, 335, 341, 359, 461, 496, 648
AjiI CACGTC 1 cut(s) 882
AjnI CCWGG 4 cut(s) 294, 522, 552, 630
AluBI AGCT 2 cut(s) 571, 876
AluI AGCT 2 cut(s) 571, 876
Alw21I GWGCWC 1 cut(s) 114
ApoI RAATTY 2 cut(s) 254, 712
ArsI GACNNNNNNTTYG 2 cut(s) 593, 625
AspLEI GCGC 1 cut(s) 247
AspS9I GGNCC 2 cut(s) 274, 792
AsuC2I CCSGG 1 cut(s) 442
AsuHPI GGTGA 3 cut(s) 709, 804, 904
BalI TGGCCA 1 cut(s) 662
BauI CACGAG 2 cut(s) 107, 392
Bbv12I GWGCWC 1 cut(s) 114
BccI CCATC 5 cut(s) 47, 160, 410, 728, 843
BceAI ACGGC 1 cut(s) 524
BciT130I CCWGG 4 cut(s) 296, 524, 554, 632
BclI TGATCA 1 cut(s) 19
BcnI CCSGG 1 cut(s) 442
BfoI RGCGCY 1 cut(s) 248
BisI GCNGC 2 cut(s) 675, 678
BlsI GCNGC 2 cut(s) 676, 679
Bme1390I CCNGG 5 cut(s) 296, 442, 524, 554, 632
BmgBI CACGTC 1 cut(s) 882
BmgT120I GGNCC 2 cut(s) 274, 792
BmrFI CCNGG 5 cut(s) 296, 442, 524, 554, 632
BmsI GCATC 1 cut(s) 490
BpmI CTGGAG 1 cut(s) 614
BpuEI CTTGAG 1 cut(s) 406
BpuMI CCSGG 1 cut(s) 442
BsaAI YACGTR 1 cut(s) 271
BsaHI GRCGYC 1 cut(s) 776
BsaJI CCNNGG 2 cut(s) 398, 441
Bsc4I CCNNNNNNNGG 1 cut(s) 301
Bse118I RCCGGY 2 cut(s) 470, 858
Bse1I ACTGG 2 cut(s) 429, 504
Bse3DI GCAATG 1 cut(s) 829
BseBI CCWGG 4 cut(s) 296, 524, 554, 632
BseDI CCNNGG 2 cut(s) 398, 441
BseGI GGATG 1 cut(s) 39
BseLI CCNNNNNNNGG 1 cut(s) 301
BseMI GCAATG 1 cut(s) 829
BseNI ACTGG 2 cut(s) 429, 504
BseX3I CGGCCG 1 cut(s) 860
BsgI GTGCAG 2 cut(s) 354, 496
Bsh1285I CGRYCG 2 cut(s) 209, 863
BsiEI CGRYCG 2 cut(s) 209, 863
BsiHKAI GWGCWC 1 cut(s) 114
BsiSI CCGG 4 cut(s) 441, 471, 773, 859
BslFI GGGAC 1 cut(s) 614
BslI CCNNNNNNNGG 1 cut(s) 301
BsmFI GGGAC 1 cut(s) 614
BsmI GAATGC 1 cut(s) 782
Bsp1286I GDGCHC 1 cut(s) 114
Bsp143I GATC 2 cut(s) 19, 210
BspACI CCGC 4 cut(s) 438, 675, 678, 790
BspQI GCTCTTC 1 cut(s) 561
BsrDI GCAATG 1 cut(s) 829
BsrFI RCCGGY 2 cut(s) 470, 858
BsrI ACTGG 2 cut(s) 429, 504
BssAI RCCGGY 2 cut(s) 470, 858
BssECI CCNNGG 2 cut(s) 398, 441
BssMI GATC 2 cut(s) 19, 210
BssNI GRCGYC 1 cut(s) 776
BssSI CACGAG 2 cut(s) 107, 392
BssT1I CCWWGG 1 cut(s) 398
Bst2BI CACGAG 2 cut(s) 107, 392
Bst2UI CCWGG 4 cut(s) 296, 524, 554, 632
Bst6I CTCTTC 1 cut(s) 561
BstACI GRCGYC 1 cut(s) 776
BstBAI YACGTR 1 cut(s) 271
BstC8I GCNNGC 3 cut(s) 36, 792, 860
BstDEI CTNAG 1 cut(s) 692
BstF5I GGATG 1 cut(s) 39
BstH2I RGCGCY 1 cut(s) 248
BstHHI GCGC 1 cut(s) 247
BstKTI GATC 2 cut(s) 22, 213
BstMBI GATC 2 cut(s) 19, 210
BstMCI CGRYCG 2 cut(s) 209, 863
BstMWI GCNNNNNNNGC 2 cut(s) 766, 882
BstNI CCWGG 4 cut(s) 296, 524, 554, 632
BstSCI CCNGG 5 cut(s) 294, 440, 522, 552, 630
BstZI CGGCCG 1 cut(s) 860
BtrI CACGTC 1 cut(s) 882
BtsCI GGATG 1 cut(s) 39
BtsIMutI CAGTG 1 cut(s) 436
Cac8I GCNNGC 3 cut(s) 36, 792, 860
CfoI GCGC 1 cut(s) 247
Cfr10I RCCGGY 2 cut(s) 470, 858
Cfr13I GGNCC 2 cut(s) 274, 792
CseI GACGC 1 cut(s) 765
DdeI CTNAG 1 cut(s) 692
DpnI GATC 2 cut(s) 21, 212
DpnII GATC 2 cut(s) 19, 210
DraIII CACNNNGTG 1 cut(s) 892
EaeI YGGCCR 5 cut(s) 379, 472, 660, 842, 860
EagI CGGCCG 1 cut(s) 860
Eam1104I CTCTTC 1 cut(s) 561
EarI CTCTTC 1 cut(s) 561
EciI GGCGGA 1 cut(s) 427
EclXI CGGCCG 1 cut(s) 860
Eco130I CCWWGG 1 cut(s) 398
Eco52I CGGCCG 1 cut(s) 860
EcoRII CCWGG 4 cut(s) 294, 522, 552, 630
EcoT14I CCWWGG 1 cut(s) 398
ErhI CCWWGG 1 cut(s) 398
FaqI GGGAC 1 cut(s) 614
FauI CCCGC 1 cut(s) 783
FbaI TGATCA 1 cut(s) 19
Fnu4HI GCNGC 2 cut(s) 675, 678
FokI GGATG 1 cut(s) 26
Fsp4HI GCNGC 2 cut(s) 675, 678
GlaI GCGC 1 cut(s) 246
GluI GCNGC 2 cut(s) 675, 678
GsuI CTGGAG 1 cut(s) 614
HaeII RGCGCY 1 cut(s) 248
HapII CCGG 4 cut(s) 441, 471, 773, 859
HgaI GACGC 1 cut(s) 765
HhaI GCGC 1 cut(s) 247
Hin1I GRCGYC 1 cut(s) 776
Hin6I GCGC 1 cut(s) 245
HinP1I GCGC 1 cut(s) 245
HincII GTYRAC 1 cut(s) 201
HindII GTYRAC 1 cut(s) 201
HinfI GANTC 5 cut(s) 57, 202, 434, 461, 602
HpaII CCGG 4 cut(s) 441, 471, 773, 859
HphI GGTGA 3 cut(s) 709, 804, 904
Hpy166II GTNNAC 1 cut(s) 201
Hpy188I TCNGA 1 cut(s) 253
Hpy188III TCNNGA 3 cut(s) 11, 392, 742
Hpy8I GTNNAC 1 cut(s) 201
HpyAV CCTTC 2 cut(s) 336, 502
HpyCH4IV ACGT 3 cut(s) 270, 354, 881
HpyCH4V TGCA 2 cut(s) 371, 513
HpyF10VI GCNNNNNNNGC 2 cut(s) 766, 882
HpyF3I CTNAG 1 cut(s) 692
HpySE526I ACGT 3 cut(s) 270, 354, 881
Hsp92I GRCGYC 1 cut(s) 776
HspAI GCGC 1 cut(s) 245
KroI GCCGGC 1 cut(s) 858
KroNI GCCGGC 1 cut(s) 860
Ksp22I TGATCA 1 cut(s) 19
Kzo9I GATC 2 cut(s) 19, 210
LguI GCTCTTC 1 cut(s) 561
LmnI GCTCC 2 cut(s) 575, 633
LweI GCATC 1 cut(s) 490
MaeII ACGT 3 cut(s) 270, 354, 881
MaeIII GTNAC 2 cut(s) 147, 431
MalI GATC 2 cut(s) 21, 212
MboI GATC 2 cut(s) 19, 210
MboII GAAGA 3 cut(s) 353, 578, 715
MhlI GDGCHC 1 cut(s) 114
MlsI TGGCCA 1 cut(s) 662
MluNI TGGCCA 1 cut(s) 662
MlyI GAGTC 3 cut(s) 196, 428, 596
MmeI TCCRAC 1 cut(s) 491
MnlI CCTC 3 cut(s) 71, 116, 844
Mox20I TGGCCA 1 cut(s) 662
MroNI GCCGGC 1 cut(s) 858
MscI TGGCCA 1 cut(s) 662
MseI TTAA 5 cut(s) 129, 185, 189, 507, 588
MslI CAYNNNNRTG 1 cut(s) 486
Msp20I TGGCCA 1 cut(s) 662
MspA1I CMGCKG 1 cut(s) 790
MspI CCGG 4 cut(s) 441, 471, 773, 859
MspR9I CCNGG 5 cut(s) 296, 442, 524, 554, 632
Mva1269I GAATGC 1 cut(s) 782
MvaI CCWGG 4 cut(s) 296, 524, 554, 632
MwoI GCNNNNNNNGC 2 cut(s) 766, 882
NaeI GCCGGC 1 cut(s) 860
NciI CCSGG 1 cut(s) 442
NdeII GATC 2 cut(s) 19, 210
NgoMIV GCCGGC 1 cut(s) 858
NmeAIII GCCGAG 1 cut(s) 870
NmuCI GTSAC 1 cut(s) 431
PacI TTAATTAA 1 cut(s) 189
PciSI GCTCTTC 1 cut(s) 561
PctI GAATGC 1 cut(s) 782
PdiI GCCGGC 1 cut(s) 860
PfeI GAWTC 2 cut(s) 57, 461
PflMI CCANNNNNTGG 1 cut(s) 301
PkrI GCNGC 2 cut(s) 676, 679
PleI GAGTC 3 cut(s) 196, 428, 596
PpsI GAGTC 3 cut(s) 196, 428, 596
Ppu21I YACGTR 1 cut(s) 271
Psp1406I AACGTT 1 cut(s) 354
Psp6I CCWGG 4 cut(s) 294, 522, 552, 630
PspGI CCWGG 4 cut(s) 294, 522, 552, 630
PspPI GGNCC 2 cut(s) 274, 792
RseI CAYNNNNRTG 1 cut(s) 486
SapI GCTCTTC 1 cut(s) 561
SaqAI TTAA 5 cut(s) 129, 185, 189, 507, 588
SatI GCNGC 2 cut(s) 675, 678
Sau3AI GATC 2 cut(s) 19, 210
Sau96I GGNCC 2 cut(s) 274, 792
SchI GAGTC 3 cut(s) 196, 428, 596
ScrFI CCNGG 5 cut(s) 296, 442, 524, 554, 632
SduI GDGCHC 1 cut(s) 114
SetI ASST 9 cut(s) 70, 273, 357, 573, 594, 636, 855, 878, 884
SfaNI GCATC 1 cut(s) 490
SmiMI CAYNNNNRTG 1 cut(s) 486
SmlI CTYRAG 2 cut(s) 9, 421
SmoI CTYRAG 2 cut(s) 9, 421
SsiI CCGC 4 cut(s) 438, 675, 678, 790
StyD4I CCNGG 5 cut(s) 294, 440, 522, 552, 630
StyI CCWWGG 1 cut(s) 398
TaiI ACGT 3 cut(s) 273, 357, 884
TaqI TCGA 1 cut(s) 205
TaqII GACCGA 1 cut(s) 223
TauI GCSGC 2 cut(s) 677, 680
TfiI GAWTC 2 cut(s) 57, 461
Tru1I TTAA 5 cut(s) 129, 185, 189, 507, 588
Tru9I TTAA 5 cut(s) 129, 185, 189, 507, 588
TscAI CASTG 1 cut(s) 436
TseFI GTSAC 1 cut(s) 431
Tsp45I GTSAC 1 cut(s) 431
TspDTI ATGAA 4 cut(s) 152, 549, 691, 767
TspGWI ACGGA 1 cut(s) 194
TspRI CASTG 1 cut(s) 436
Van91I CCANNNNNTGG 1 cut(s) 301
XapI RAATTY 2 cut(s) 254, 712
XcmI CCANNNNNNNNNTGG 1 cut(s) 893
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.