Rw6G014680

transferase activity, transferring hexosyl groups

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000160
Physical Location & Seq
Forward (+)
27254508 .. 27256437
1930 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G014680.1

Sequence Viewer

Length: 819 bp
ATGCTCGTGGCTGACTTGCTTGTGGATGGTGCGGCCAAACATAAAATCCTTTCTTTCATGGATGGGCATGCTGGATACAACCAAATCTTTATAGCTGAGGAAGATGTTCACAAAACGGCGTTAAGATGCCCAGGCGCAATAGGAACATTTGAGCTTCGGCACTACATGTTACCCTCGATCGTCCAAGTCATATCCAAAACTGATTTAATAAAGTACATGCTGACTCGGCCTATCATACGAGGCCGAATTGGAAAATGGACCATGGCGCTGTCTGAGTTTACGTTTCAATATGTATCTCAAAAGTCCGTCAAGGGCCAAGCATTGGCCGATTTTCTAGCTCATCACCCTTCGACCGAGTTTGAGGGAGCTGAGGAGGTTGATATTAGGACGGTATATGTGGCTTCCATGACCAACAATCACTGGACCATGTATTTTGATGGGTATAGTACTGAGTTTTCAGCCAGAGTTGGTGTTGTCGTTGAAACGCCTGAAAGACAAAAGTTCCATAAGCAGAATTTAGTCCTATATTTTACATGCACAAACAATCAGGCAGAATATGAGGCTCTTATTGTTGGGTTGGAGATTCTACAAGAGATAGGAGCACGACGGGTTCTGGTTTTTGGAAACTCTCAATTGGTCATAAACCAAATGAATAAGGAGTTCAAATGCACAAGTTGGGGACTTTTATGTTATCACGCCTTAGCTGACCAGCTCGCCAACACGTTCGATAGAATCTCTTTCGCCCAACTCCCAAGGGGACAAAACATGGAGGCCAATGAGATGGCCCAATTAGCCTCAGGGTTACGAATCCCCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

272

Amino Acids

30.78

Weight (kDa)

6.5

Isoelectric Point (pI)

33.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 154 - 264 1.6e-12 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000160)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11612 FvH4_2g25851 FvH4_3g22802 FvH4_3g22805 FvH4_3g31361 FvH4_3g31382 FvH4_4g05272 FvH4_4g05273 FvH4_4g14567 FvH4_4g15161 FvH4_5g22540 FvH4_6g13113 FvH4_6g31923 FvH4_6g31924 FvH4_6g33651 FvH4_6g45122 FvH4_7g03662
pyrus_communis pycom01g04240 pycom01g24010 pycom02g18210 pycom02g19420 pycom05g06510 pycom09g15750 pycom09g18940 pycom12g02580 pycom12g03100 pycom12g08310 pycom13g22710 pycom13g28060 pycom16g18340 pycom16g18350 pycom16g24880 pycom16g26240 pycom461g00260 pycom520g00980 pycom520g01320
rosa_chinensis RchiOBHm_Chr1g0320731 RchiOBHm_Chr2g0102771 RchiOBHm_Chr3g0462151 RchiOBHm_Chr5g0038141 RchiOBHm_Chr5g0069371 RchiOBHm_Chr7g0239101
rosa_multiflora Rmu_co8038252.1_g000001 Rmu_co8138412.1_g000001 Rmu_co8331087.1_g000001 Rmu_co8479311.1_g000001 Rmu_sc0000112.1_g000018 Rmu_sc0000346.1_g000012 Rmu_sc0002102.1_g000002 Rmu_sc0003505.1_g000013 Rmu_sc0004249.1_g000007 Rmu_sc0004448.1_g000010 Rmu_sc0004594.1_g000011 Rmu_sc0004915.1_g000010 Rmu_sc0008019.1_g000019 Rmu_sc0008303.1_g000001 Rmu_sc0008355.1_g000005 Rmu_sc0009253.1_g000018 Rmu_sc0010211.1_g000002 Rmu_sc0010252.1_g000009 Rmu_sc0011534.1_g000008 Rmu_sc0014811.1_g000009 Rmu_sc0019475.1_g000001 Rmu_sc0024897.1_g000001 Rmu_sc0024898.1_g000001 Rmu_sc0031791.1_g000001 Rmu_sc0038715.1_g000001
rosa_roxburghii Rroxscaffold_165G00436940 Rroxscaffold_174G00435270 Rroxscaffold_177G00434330 Rroxscaffold_177G00434340 Rroxscaffold_177G00434350 Rroxscaffold_1G00002160 Rroxscaffold_1G00025260 Rroxscaffold_1G00042950 Rroxscaffold_1G00068010 Rroxscaffold_2G00107530 Rroxscaffold_3G00221190 Rroxscaffold_3G00221520 Rroxscaffold_3G00223200 Rroxscaffold_4G00322230 Rroxscaffold_4G00331810 Rroxscaffold_5G00385150 Rroxscaffold_5G00387510 Rroxscaffold_6G00410520 Rroxscaffold_6G00423360 Rroxscaffold_6G00423370 Rroxscaffold_6G00429210 Rroxscaffold_7G00158300 Rroxscaffold_7G00163480 Rroxscaffold_7G00171410 Rroxscaffold_7G00178940 Rroxscaffold_7G00199480 Rroxscaffold_7G00205630 Rroxscaffold_7G00207440
rosa_rugosa Rorug01G0056400 Rorug04G0063900 Rorug05G0251400 Rorug07G0221900
rosa_samantha Rh1DG169400 Rh2AG292900 Rh2DG519200 Rh4DG260600 Rh5AG042600 Rh6BG117500
rosa_wichuraiana Rw0G001900 Rw0G005150 Rw0G006380 Rw0G015140 Rw0G016320 Rw0G019440 Rw0G019840 Rw0G023740 Rw1G001590 Rw1G002180 Rw1G003560 Rw1G004280 Rw1G006110 Rw1G006680 Rw1G007920 Rw1G008480 Rw1G009120 Rw1G010310 Rw1G014900 Rw1G019650 Rw1G022070 Rw1G022170 Rw1G041570 Rw2G002740 Rw2G005760 Rw2G032370 Rw2G046770 Rw2G050600 Rw2G051420 Rw3G015930 Rw3G016280 Rw3G019580 Rw3G028420 Rw4G003430 Rw4G005350 Rw4G007530 Rw4G008150 Rw4G009580 Rw4G010250 Rw4G015800 Rw4G017000 Rw4G017910 Rw4G018510 Rw4G019700 Rw4G031010 Rw5G012650 Rw5G020140 Rw5G022060 Rw5G034420 Rw5G035560 Rw5G043010 Rw5G046750 Rw5G047340 Rw5G049500 Rw6G001390 Rw6G002210 Rw6G004530 Rw6G004770 Rw6G005100 Rw6G005890 Rw6G011860 Rw6G014680 Rw6G019480 Rw6G028970 Rw6G033800 Rw7G013050 Rw7G014800 Rw7G025760 Rw7G025850 Rw7G026730 Rw7G026870 Rw7G036330 Rw7G036430 Rw7G039320 Rw7G039510 Rw7G039560 Rw7G041370 Rw7G042050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 322
AciI CCGC 1 cut(s) 32
AcoI YGGCCR 2 cut(s) 33, 324
AcsI RAATTY 1 cut(s) 514
AfaI GTAC 2 cut(s) 215, 448
AfiI CCNNNNNNNGG 1 cut(s) 322
AflIII ACRYGT 2 cut(s) 165, 720
AgsI TTSAA 3 cut(s) 287, 482, 664
AjnI CCWGG 1 cut(s) 130
AluBI AGCT 6 cut(s) 95, 154, 338, 368, 704, 712
AluI AGCT 6 cut(s) 95, 154, 338, 368, 704, 712
Alw21I GWGCWC 1 cut(s) 604
AoxI GGCC 7 cut(s) 33, 227, 241, 313, 324, 771, 783
ApoI RAATTY 1 cut(s) 514
Asp700I GAANNNNTTC 1 cut(s) 105
AspLEI GCGC 2 cut(s) 137, 268
AspS9I GGNCC 4 cut(s) 258, 313, 423, 784
AsuHPI GGTGA 1 cut(s) 335
AvaII GGWCC 2 cut(s) 258, 423
AxyI CCTNAGG 1 cut(s) 796
BauI CACGAG 1 cut(s) 5
Bbv12I GWGCWC 1 cut(s) 604
BbvCI CCTCAGC 2 cut(s) 96, 369
BccI CCATC 4 cut(s) 20, 56, 431, 775
BceAI ACGGC 1 cut(s) 132
BciT130I CCWGG 1 cut(s) 132
BciVI GTATCC 1 cut(s) 68
BfaI CTAG 1 cut(s) 335
BfoI RGCGCY 1 cut(s) 269
BfuI GTATCC 1 cut(s) 68
BisI GCNGC 1 cut(s) 33
BlsI GCNGC 1 cut(s) 34
BmcAI AGTACT 1 cut(s) 448
Bme1390I CCNGG 1 cut(s) 132
Bme18I GGWCC 2 cut(s) 258, 423
BmgT120I GGNCC 4 cut(s) 258, 313, 423, 784
BmrFI CCNGG 1 cut(s) 132
BmsI GCATC 1 cut(s) 116
Bpu10I CCTNAGC 3 cut(s) 96, 369, 700
BsaJI CCNNGG 3 cut(s) 130, 261, 752
Bsc4I CCNNNNNNNGG 1 cut(s) 322
Bse1I ACTGG 1 cut(s) 425
Bse21I CCTNAGG 1 cut(s) 796
BseBI CCWGG 1 cut(s) 132
BseDI CCNNGG 3 cut(s) 130, 261, 752
BseGI GGATG 2 cut(s) 31, 67
BseLI CCNNNNNNNGG 1 cut(s) 322
BseMII CTCAG 5 cut(s) 87, 264, 360, 441, 810
BseNI ACTGG 1 cut(s) 425
BseRI GAGGAG 1 cut(s) 386
Bsh1285I CGRYCG 2 cut(s) 180, 354
BshFI GGCC 7 cut(s) 35, 229, 243, 315, 326, 773, 785
BsiEI CGRYCG 2 cut(s) 180, 354
BsiHKAI GWGCWC 1 cut(s) 604
BslFI GGGAC 2 cut(s) 693, 771
BslI CCNNNNNNNGG 1 cut(s) 322
BsmFI GGGAC 2 cut(s) 693, 771
BsnI GGCC 7 cut(s) 35, 229, 243, 315, 326, 773, 785
Bsp1286I GDGCHC 1 cut(s) 604
Bsp143I GATC 1 cut(s) 177
Bsp19I CCATGG 1 cut(s) 261
BspACI CCGC 1 cut(s) 32
BspANI GGCC 7 cut(s) 35, 229, 243, 315, 326, 773, 785
BspCNI CTCAG 5 cut(s) 88, 265, 361, 442, 809
BsrI ACTGG 1 cut(s) 425
BssECI CCNNGG 3 cut(s) 130, 261, 752
BssMI GATC 1 cut(s) 177
BssSI CACGAG 1 cut(s) 5
BssT1I CCWWGG 2 cut(s) 261, 752
Bst2BI CACGAG 1 cut(s) 5
Bst2UI CCWGG 1 cut(s) 132
Bst4CI ACNGT 1 cut(s) 391
BstC8I GCNNGC 2 cut(s) 69, 714
BstDEI CTNAG 6 cut(s) 96, 273, 369, 450, 700, 796
BstDSI CCRYGG 1 cut(s) 261
BstF5I GGATG 2 cut(s) 31, 67
BstH2I RGCGCY 1 cut(s) 269
BstHHI GCGC 2 cut(s) 137, 268
BstKTI GATC 1 cut(s) 180
BstMBI GATC 1 cut(s) 177
BstMCI CGRYCG 2 cut(s) 180, 354
BstMWI GCNNNNNNNGC 2 cut(s) 226, 791
BstNI CCWGG 1 cut(s) 132
BstNSI RCATGY 4 cut(s) 71, 169, 220, 537
BstSCI CCNGG 1 cut(s) 130
BstXI CCANNNNNNTGG 1 cut(s) 781
Bsu36I CCTNAGG 1 cut(s) 796
BsuI GTATCC 1 cut(s) 68
BsuRI GGCC 7 cut(s) 35, 229, 243, 315, 326, 773, 785
BtgI CCRYGG 1 cut(s) 261
BtsCI GGATG 2 cut(s) 31, 67
BtsIMutI CAGTG 1 cut(s) 418
Cac8I GCNNGC 2 cut(s) 69, 714
CfoI GCGC 2 cut(s) 137, 268
Cfr13I GGNCC 4 cut(s) 258, 313, 423, 784
Csp6I GTAC 2 cut(s) 214, 447
CviAII CATG 9 cut(s) 58, 68, 166, 217, 262, 406, 427, 534, 766
CviQI GTAC 2 cut(s) 214, 447
DdeI CTNAG 6 cut(s) 96, 273, 369, 450, 700, 796
DpnI GATC 1 cut(s) 179
DpnII GATC 1 cut(s) 177
EaeI YGGCCR 2 cut(s) 33, 324
Eco130I CCWWGG 2 cut(s) 261, 752
Eco47I GGWCC 2 cut(s) 258, 423
Eco81I CCTNAGG 1 cut(s) 796
EcoRII CCWGG 1 cut(s) 130
EcoT14I CCWWGG 2 cut(s) 261, 752
ErhI CCWWGG 2 cut(s) 261, 752
FaeI CATG 9 cut(s) 61, 71, 169, 220, 265, 409, 430, 537, 769
FaqI GGGAC 2 cut(s) 693, 771
FatI CATG 9 cut(s) 57, 67, 165, 216, 261, 405, 426, 533, 765
Fnu4HI GCNGC 1 cut(s) 33
FokI GGATG 2 cut(s) 38, 74
Fsp4HI GCNGC 1 cut(s) 33
FspBI CTAG 1 cut(s) 335
GlaI GCGC 2 cut(s) 136, 267
GluI GCNGC 1 cut(s) 33
HaeII RGCGCY 1 cut(s) 269
HaeIII GGCC 7 cut(s) 35, 229, 243, 315, 326, 773, 785
HhaI GCGC 2 cut(s) 137, 268
Hin1II CATG 9 cut(s) 61, 71, 169, 220, 265, 409, 430, 537, 769
Hin6I GCGC 2 cut(s) 135, 266
HinP1I GCGC 2 cut(s) 135, 266
HinfI GANTC 4 cut(s) 223, 583, 732, 807
HphI GGTGA 1 cut(s) 335
Hpy166II GTNNAC 2 cut(s) 109, 279
Hpy188I TCNGA 1 cut(s) 274
Hpy8I GTNNAC 2 cut(s) 109, 279
Hpy99I CGWCG 1 cut(s) 609
HpyAV CCTTC 1 cut(s) 357
HpyCH4III ACNGT 1 cut(s) 391
HpyCH4IV ACGT 2 cut(s) 281, 722
HpyCH4V TGCA 2 cut(s) 537, 669
HpyF10VI GCNNNNNNNGC 2 cut(s) 226, 791
HpyF3I CTNAG 6 cut(s) 96, 273, 369, 450, 700, 796
HpySE526I ACGT 2 cut(s) 281, 722
Hsp92II CATG 9 cut(s) 61, 71, 169, 220, 265, 409, 430, 537, 769
HspAI GCGC 2 cut(s) 135, 266
Kzo9I GATC 1 cut(s) 177
LmnI GCTCC 2 cut(s) 365, 599
LweI GCATC 1 cut(s) 116
MaeI CTAG 1 cut(s) 335
MaeII ACGT 2 cut(s) 281, 722
MaeIII GTNAC 2 cut(s) 168, 801
MalI GATC 1 cut(s) 179
MboI GATC 1 cut(s) 177
MboII GAAGA 1 cut(s) 113
MfeI CAATTG 1 cut(s) 632
MhlI GDGCHC 1 cut(s) 604
MluCI AATT 4 cut(s) 246, 514, 632, 788
MlyI GAGTC 1 cut(s) 217
MmeI TCCRAC 1 cut(s) 558
MnlI CCTC 9 cut(s) 91, 184, 233, 355, 364, 367, 553, 763, 805
MroXI GAANNNNTTC 1 cut(s) 105
MseI TTAA 2 cut(s) 122, 206
MspR9I CCNGG 1 cut(s) 132
MunI CAATTG 1 cut(s) 632
MvaI CCWGG 1 cut(s) 132
MwoI GCNNNNNNNGC 2 cut(s) 226, 791
NcoI CCATGG 1 cut(s) 261
NdeII GATC 1 cut(s) 177
NlaIII CATG 9 cut(s) 61, 71, 169, 220, 265, 409, 430, 537, 769
NmeAIII GCCGAG 1 cut(s) 205
NspI RCATGY 4 cut(s) 71, 169, 220, 537
PaeI GCATGC 1 cut(s) 71
PciI ACATGT 1 cut(s) 165
PdmI GAANNNNTTC 1 cut(s) 105
PfeI GAWTC 3 cut(s) 583, 732, 807
PflMI CCANNNNNTGG 1 cut(s) 322
PkrI GCNGC 1 cut(s) 34
Ple19I CGATCG 1 cut(s) 180
PleI GAGTC 1 cut(s) 217
PpsI GAGTC 1 cut(s) 217
PscI ACATGT 1 cut(s) 165
Psp6I CCWGG 1 cut(s) 130
PspGI CCWGG 1 cut(s) 130
PspPI GGNCC 4 cut(s) 258, 313, 423, 784
PvuI CGATCG 1 cut(s) 180
RsaI GTAC 2 cut(s) 215, 448
RsaNI GTAC 2 cut(s) 214, 447
SaqAI TTAA 2 cut(s) 122, 206
SatI GCNGC 1 cut(s) 33
Sau3AI GATC 1 cut(s) 177
Sau96I GGNCC 4 cut(s) 258, 313, 423, 784
ScaI AGTACT 1 cut(s) 448
SchI GAGTC 1 cut(s) 217
ScrFI CCNGG 1 cut(s) 132
SduI GDGCHC 1 cut(s) 604
SetI ASST 9 cut(s) 97, 156, 284, 340, 370, 378, 706, 714, 725
SfaNI GCATC 1 cut(s) 116
SinI GGWCC 2 cut(s) 258, 423
SphI GCATGC 1 cut(s) 71
Sse9I AATT 4 cut(s) 246, 514, 632, 788
SsiI CCGC 1 cut(s) 32
SspMI CTAG 1 cut(s) 335
StyD4I CCNGG 1 cut(s) 130
StyI CCWWGG 2 cut(s) 261, 752
TaaI ACNGT 1 cut(s) 391
TaiI ACGT 2 cut(s) 284, 725
TaqI TCGA 3 cut(s) 176, 350, 726
TaqII GACCGA 1 cut(s) 368
TasI AATT 4 cut(s) 246, 514, 632, 788
TatI WGTACW 2 cut(s) 213, 446
TauI GCSGC 1 cut(s) 35
TfiI GAWTC 3 cut(s) 583, 732, 807
Tru1I TTAA 2 cut(s) 122, 206
Tru9I TTAA 2 cut(s) 122, 206
TscAI CASTG 1 cut(s) 425
TspDTI ATGAA 2 cut(s) 46, 665
TspGWI ACGGA 1 cut(s) 295
TspRI CASTG 1 cut(s) 425
Van91I CCANNNNNTGG 1 cut(s) 322
VpaK11BI GGWCC 2 cut(s) 258, 423
XapI RAATTY 1 cut(s) 514
XceI RCATGY 4 cut(s) 71, 169, 220, 537
XmnI GAANNNNTTC 1 cut(s) 105
XspI CTAG 1 cut(s) 335
ZrmI AGTACT 1 cut(s) 448
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.