Rmu_co8479311.1_g000001

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8479311.1
OG0000160
Physical Location & Seq
Forward (+)
1 .. 568
568 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8479311.1_g000001.1.cds

Sequence Viewer

Length: 362 bp
ctggctacaggcattacattgaaatacggggttcgcgagcgcattctgaatgtcgagcgccgcacattaccttcatggctcgcgcggccggacccttcgatgatccagtaattgttgtcctaaagcctattgacgtcgattggctcattccgttgatcaattacctcaagcaaccagaccagacagctgacaggaagactcgttttcttgccttaaattacttcctcaggggtgatgagctacgacggcgtggggaggatggcatcgactttcgatgcttatatggccaccaggcaaaacgactaatgcgcaaagcgcacacaggaatctgcggcgcccatcaagcaggacccaagatgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

119

Amino Acids

13.69

Weight (kDa)

9.66

Isoelectric Point (pI)

46.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000160)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11612 FvH4_2g25851 FvH4_3g22802 FvH4_3g22805 FvH4_3g31361 FvH4_3g31382 FvH4_4g05272 FvH4_4g05273 FvH4_4g14567 FvH4_4g15161 FvH4_5g22540 FvH4_6g13113 FvH4_6g31923 FvH4_6g31924 FvH4_6g33651 FvH4_6g45122 FvH4_7g03662
pyrus_communis pycom01g04240 pycom01g24010 pycom02g18210 pycom02g19420 pycom05g06510 pycom09g15750 pycom09g18940 pycom12g02580 pycom12g03100 pycom12g08310 pycom13g22710 pycom13g28060 pycom16g18340 pycom16g18350 pycom16g24880 pycom16g26240 pycom461g00260 pycom520g00980 pycom520g01320
rosa_chinensis RchiOBHm_Chr1g0320731 RchiOBHm_Chr2g0102771 RchiOBHm_Chr3g0462151 RchiOBHm_Chr5g0038141 RchiOBHm_Chr5g0069371 RchiOBHm_Chr7g0239101
rosa_multiflora Rmu_co8038252.1_g000001 Rmu_co8138412.1_g000001 Rmu_co8331087.1_g000001 Rmu_co8479311.1_g000001 Rmu_sc0000112.1_g000018 Rmu_sc0000346.1_g000012 Rmu_sc0002102.1_g000002 Rmu_sc0003505.1_g000013 Rmu_sc0004249.1_g000007 Rmu_sc0004448.1_g000010 Rmu_sc0004594.1_g000011 Rmu_sc0004915.1_g000010 Rmu_sc0008019.1_g000019 Rmu_sc0008303.1_g000001 Rmu_sc0008355.1_g000005 Rmu_sc0009253.1_g000018 Rmu_sc0010211.1_g000002 Rmu_sc0010252.1_g000009 Rmu_sc0011534.1_g000008 Rmu_sc0014811.1_g000009 Rmu_sc0019475.1_g000001 Rmu_sc0024897.1_g000001 Rmu_sc0024898.1_g000001 Rmu_sc0031791.1_g000001 Rmu_sc0038715.1_g000001
rosa_roxburghii Rroxscaffold_165G00436940 Rroxscaffold_174G00435270 Rroxscaffold_177G00434330 Rroxscaffold_177G00434340 Rroxscaffold_177G00434350 Rroxscaffold_1G00002160 Rroxscaffold_1G00025260 Rroxscaffold_1G00042950 Rroxscaffold_1G00068010 Rroxscaffold_2G00107530 Rroxscaffold_3G00221190 Rroxscaffold_3G00221520 Rroxscaffold_3G00223200 Rroxscaffold_4G00322230 Rroxscaffold_4G00331810 Rroxscaffold_5G00385150 Rroxscaffold_5G00387510 Rroxscaffold_6G00410520 Rroxscaffold_6G00423360 Rroxscaffold_6G00423370 Rroxscaffold_6G00429210 Rroxscaffold_7G00158300 Rroxscaffold_7G00163480 Rroxscaffold_7G00171410 Rroxscaffold_7G00178940 Rroxscaffold_7G00199480 Rroxscaffold_7G00205630 Rroxscaffold_7G00207440
rosa_rugosa Rorug01G0056400 Rorug04G0063900 Rorug05G0251400 Rorug07G0221900
rosa_samantha Rh1DG169400 Rh2AG292900 Rh2DG519200 Rh4DG260600 Rh5AG042600 Rh6BG117500
rosa_wichuraiana Rw0G001900 Rw0G005150 Rw0G006380 Rw0G015140 Rw0G016320 Rw0G019440 Rw0G019840 Rw0G023740 Rw1G001590 Rw1G002180 Rw1G003560 Rw1G004280 Rw1G006110 Rw1G006680 Rw1G007920 Rw1G008480 Rw1G009120 Rw1G010310 Rw1G014900 Rw1G019650 Rw1G022070 Rw1G022170 Rw1G041570 Rw2G002740 Rw2G005760 Rw2G032370 Rw2G046770 Rw2G050600 Rw2G051420 Rw3G015930 Rw3G016280 Rw3G019580 Rw3G028420 Rw4G003430 Rw4G005350 Rw4G007530 Rw4G008150 Rw4G009580 Rw4G010250 Rw4G015800 Rw4G017000 Rw4G017910 Rw4G018510 Rw4G019700 Rw4G031010 Rw5G012650 Rw5G020140 Rw5G022060 Rw5G034420 Rw5G035560 Rw5G043010 Rw5G046750 Rw5G047340 Rw5G049500 Rw6G001390 Rw6G002210 Rw6G004530 Rw6G004770 Rw6G005100 Rw6G005890 Rw6G011860 Rw6G014680 Rw6G019480 Rw6G028970 Rw6G033800 Rw7G013050 Rw7G014800 Rw7G025760 Rw7G025850 Rw7G026730 Rw7G026870 Rw7G036330 Rw7G036430 Rw7G039320 Rw7G039510 Rw7G039560 Rw7G041370 Rw7G042050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 137
Acc16I TGCGCA 1 cut(s) 310
AccB1I GGYRCC 1 cut(s) 334
AccII CGCG 3 cut(s) 36, 83, 85
AciI CCGC 3 cut(s) 61, 85, 332
AclWI GGATC 1 cut(s) 97
AcoI YGGCCR 2 cut(s) 86, 285
AcyI GRCGYC 2 cut(s) 134, 335
AgsI TTSAA 1 cut(s) 22
AjnI CCWGG 1 cut(s) 290
AluBI AGCT 2 cut(s) 187, 240
AluI AGCT 2 cut(s) 187, 240
AlwI GGATC 1 cut(s) 97
AoxI GGCC 2 cut(s) 86, 285
AspLEI GCGC 6 cut(s) 42, 60, 85, 311, 318, 337
AspS9I GGNCC 2 cut(s) 91, 349
AsuHPI GGTGA 1 cut(s) 244
AvaII GGWCC 2 cut(s) 91, 349
AxyI CCTNAGG 1 cut(s) 226
BalI TGGCCA 1 cut(s) 287
BanI GGYRCC 1 cut(s) 334
BbsI GAAGAC 1 cut(s) 202
BccI CCATC 2 cut(s) 253, 347
BceAI ACGGC 1 cut(s) 262
BciT130I CCWGG 1 cut(s) 292
BclI TGATCA 1 cut(s) 155
BfmI CTRYAG 1 cut(s) 6
BfoI RGCGCY 2 cut(s) 61, 338
BisI GCNGC 3 cut(s) 61, 86, 333
BlsI GCNGC 3 cut(s) 62, 87, 334
Bme1390I CCNGG 1 cut(s) 292
Bme18I GGWCC 2 cut(s) 91, 349
BmgT120I GGNCC 2 cut(s) 91, 349
BmiI GGNNCC 3 cut(s) 93, 336, 351
BmrFI CCNGG 1 cut(s) 292
BmsI GCATC 2 cut(s) 265, 272
BpiI GAAGAC 1 cut(s) 202
BpuEI CTTGAG 1 cut(s) 151
BsaHI GRCGYC 2 cut(s) 134, 335
Bse1I ACTGG 1 cut(s) 106
Bse21I CCTNAGG 1 cut(s) 226
BseBI CCWGG 1 cut(s) 292
BseGI GGATG 1 cut(s) 264
BseMII CTCAG 1 cut(s) 240
BseNI ACTGG 1 cut(s) 106
BseX3I CGGCCG 1 cut(s) 86
Bsh1236I CGCG 3 cut(s) 36, 83, 85
Bsh1285I CGRYCG 1 cut(s) 89
BshFI GGCC 2 cut(s) 88, 287
BshNI GGYRCC 1 cut(s) 334
BsiEI CGRYCG 1 cut(s) 89
BsiSI CCGG 1 cut(s) 89
BsmI GAATGC 1 cut(s) 42
BsnI GGCC 2 cut(s) 88, 287
Bsp143I GATC 2 cut(s) 102, 155
Bsp68I TCGCGA 1 cut(s) 36
BspACI CCGC 3 cut(s) 61, 85, 332
BspANI GGCC 2 cut(s) 88, 287
BspCNI CTCAG 1 cut(s) 239
BspFNI CGCG 3 cut(s) 36, 83, 85
BspLI GGNNCC 3 cut(s) 93, 336, 351
BspPI GGATC 1 cut(s) 97
BspT107I GGYRCC 1 cut(s) 334
BsrI ACTGG 1 cut(s) 106
BssMI GATC 2 cut(s) 102, 155
BssNI GRCGYC 2 cut(s) 134, 335
Bst2UI CCWGG 1 cut(s) 292
BstACI GRCGYC 2 cut(s) 134, 335
BstC8I GCNNGC 2 cut(s) 38, 81
BstDEI CTNAG 1 cut(s) 226
BstF5I GGATG 1 cut(s) 264
BstFNI CGCG 3 cut(s) 36, 83, 85
BstH2I RGCGCY 2 cut(s) 61, 338
BstHHI GCGC 6 cut(s) 42, 60, 85, 311, 318, 337
BstKTI GATC 2 cut(s) 105, 158
BstMBI GATC 2 cut(s) 102, 155
BstMCI CGRYCG 1 cut(s) 89
BstMWI GCNNNNNNNGC 5 cut(s) 85, 246, 284, 315, 343
BstNI CCWGG 1 cut(s) 292
BstSCI CCNGG 1 cut(s) 290
BstSFI CTRYAG 1 cut(s) 6
BstUI CGCG 3 cut(s) 36, 83, 85
BstV2I GAAGAC 1 cut(s) 202
BstZI CGGCCG 1 cut(s) 86
Bsu36I CCTNAGG 1 cut(s) 226
BsuRI GGCC 2 cut(s) 88, 287
BtsCI GGATG 1 cut(s) 264
BtuMI TCGCGA 1 cut(s) 36
Cac8I GCNNGC 2 cut(s) 38, 81
CfoI GCGC 6 cut(s) 42, 60, 85, 311, 318, 337
Cfr13I GGNCC 2 cut(s) 91, 349
CviAII CATG 1 cut(s) 75
CviJI RGCY 8 cut(s) 5, 79, 88, 126, 144, 187, 240, 287
CviKI_1 RGCY 8 cut(s) 5, 79, 88, 126, 144, 187, 240, 287
DdeI CTNAG 1 cut(s) 226
DinI GGCGCC 1 cut(s) 336
DpnI GATC 2 cut(s) 104, 157
DpnII GATC 2 cut(s) 102, 155
EaeI YGGCCR 2 cut(s) 86, 285
EagI CGGCCG 1 cut(s) 86
EclXI CGGCCG 1 cut(s) 86
Eco47I GGWCC 2 cut(s) 91, 349
Eco52I CGGCCG 1 cut(s) 86
Eco81I CCTNAGG 1 cut(s) 226
EcoO109I RGGNCCY 1 cut(s) 349
EcoRII CCWGG 1 cut(s) 290
EgeI GGCGCC 1 cut(s) 336
EheI GGCGCC 1 cut(s) 336
FaeI CATG 1 cut(s) 78
FaiI YATR 3 cut(s) 76, 282, 284
FatI CATG 1 cut(s) 74
FbaI TGATCA 1 cut(s) 155
Fnu4HI GCNGC 3 cut(s) 61, 86, 333
FokI GGATG 1 cut(s) 271
Fsp4HI GCNGC 3 cut(s) 61, 86, 333
FspI TGCGCA 1 cut(s) 310
GlaI GCGC 6 cut(s) 41, 59, 84, 310, 317, 336
GluI GCNGC 3 cut(s) 61, 86, 333
HaeII RGCGCY 2 cut(s) 61, 338
HaeIII GGCC 2 cut(s) 88, 287
HapII CCGG 1 cut(s) 89
HhaI GCGC 6 cut(s) 42, 60, 85, 311, 318, 337
Hin1I GRCGYC 2 cut(s) 134, 335
Hin1II CATG 1 cut(s) 78
Hin6I GCGC 6 cut(s) 40, 58, 83, 309, 316, 335
HinP1I GCGC 6 cut(s) 40, 58, 83, 309, 316, 335
HinfI GANTC 2 cut(s) 198, 326
HpaII CCGG 1 cut(s) 89
HphI GGTGA 1 cut(s) 244
Hpy188I TCNGA 1 cut(s) 48
Hpy188III TCNNGA 1 cut(s) 35
Hpy99I CGWCG 2 cut(s) 139, 248
HpyAV CCTTC 2 cut(s) 81, 105
HpyCH4IV ACGT 1 cut(s) 134
HpyF10VI GCNNNNNNNGC 5 cut(s) 85, 246, 284, 315, 343
HpyF3I CTNAG 1 cut(s) 226
HpySE526I ACGT 1 cut(s) 134
Hsp92I GRCGYC 2 cut(s) 134, 335
Hsp92II CATG 1 cut(s) 78
HspAI GCGC 6 cut(s) 40, 58, 83, 309, 316, 335
KasI GGCGCC 1 cut(s) 334
Ksp22I TGATCA 1 cut(s) 155
Kzo9I GATC 2 cut(s) 102, 155
LweI GCATC 2 cut(s) 265, 272
MaeII ACGT 1 cut(s) 134
MalI GATC 2 cut(s) 104, 157
MboI GATC 2 cut(s) 102, 155
MboII GAAGA 1 cut(s) 207
MlsI TGGCCA 1 cut(s) 287
MluCI AATT 3 cut(s) 110, 159, 216
MluNI TGGCCA 1 cut(s) 287
Mly113I GGCGCC 1 cut(s) 335
MlyI GAGTC 1 cut(s) 192
MnlI CCTC 3 cut(s) 175, 235, 249
Mox20I TGGCCA 1 cut(s) 287
MscI TGGCCA 1 cut(s) 287
MseI TTAA 1 cut(s) 214
Msp20I TGGCCA 1 cut(s) 287
MspA1I CMGCKG 1 cut(s) 187
MspI CCGG 1 cut(s) 89
MspR9I CCNGG 1 cut(s) 292
Mva1269I GAATGC 1 cut(s) 42
MvaI CCWGG 1 cut(s) 292
MvnI CGCG 3 cut(s) 36, 83, 85
MwoI GCNNNNNNNGC 5 cut(s) 85, 246, 284, 315, 343
NarI GGCGCC 1 cut(s) 335
NdeII GATC 2 cut(s) 102, 155
NlaIII CATG 1 cut(s) 78
NlaIV GGNNCC 3 cut(s) 93, 336, 351
NruI TCGCGA 1 cut(s) 36
NsbI TGCGCA 1 cut(s) 310
PcsI WCGNNNNNNNCGW 1 cut(s) 33
PctI GAATGC 1 cut(s) 42
PfeI GAWTC 1 cut(s) 326
PkrI GCNGC 3 cut(s) 62, 87, 334
PleI GAGTC 1 cut(s) 192
PluTI GGCGCC 1 cut(s) 338
PpsI GAGTC 1 cut(s) 192
PpuMI RGGWCCY 1 cut(s) 349
Psp5II RGGWCCY 1 cut(s) 349
Psp6I CCWGG 1 cut(s) 290
PspGI CCWGG 1 cut(s) 290
PspN4I GGNNCC 3 cut(s) 93, 336, 351
PspPI GGNCC 2 cut(s) 91, 349
PspPPI RGGWCCY 1 cut(s) 349
PvuII CAGCTG 1 cut(s) 187
RruI TCGCGA 1 cut(s) 36
SaqAI TTAA 1 cut(s) 214
SatI GCNGC 3 cut(s) 61, 86, 333
Sau3AI GATC 2 cut(s) 102, 155
Sau96I GGNCC 2 cut(s) 91, 349
SchI GAGTC 1 cut(s) 192
ScrFI CCNGG 1 cut(s) 292
SetI ASST 5 cut(s) 73, 137, 167, 189, 242
SfaNI GCATC 2 cut(s) 265, 272
SfcI CTRYAG 1 cut(s) 6
SfoI GGCGCC 1 cut(s) 336
SinI GGWCC 2 cut(s) 91, 349
SmlI CTYRAG 1 cut(s) 166
SmoI CTYRAG 1 cut(s) 166
Sse9I AATT 3 cut(s) 110, 159, 216
SsiI CCGC 3 cut(s) 61, 85, 332
SspDI GGCGCC 1 cut(s) 334
StyD4I CCNGG 1 cut(s) 290
TaiI ACGT 1 cut(s) 137
TaqI TCGA 5 cut(s) 54, 98, 137, 266, 273
TasI AATT 3 cut(s) 110, 159, 216
TauI GCSGC 3 cut(s) 63, 88, 335
TfiI GAWTC 1 cut(s) 326
Tru1I TTAA 1 cut(s) 214
Tru9I TTAA 1 cut(s) 214
TspDTI ATGAA 1 cut(s) 63
TspGWI ACGGA 1 cut(s) 140
VpaK11BI GGWCC 2 cut(s) 91, 349
ZraI GACGTC 1 cut(s) 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.