Rw1G006110

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000160
Physical Location & Seq
Forward (+)
12441404 .. 12442600
1197 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G006110.1

Sequence Viewer

Length: 822 bp
ATGAATCGCGCCATTGAGCTTTTGGATCAATTTGACGACGCCGATTTGGAGTACATCCCTCGCGAGCGCAATTTTGCAGCCAATGAGCTCGCTCAACTGGCCACAGGCATTACATTGAAGTATGGGGTTCGCGGGCGTATTCTGAAAGTCGAGCGTTGCACACTACCTTCATGGCTCGCACGGTCTGATCCGCGACATGGTTATTACTGGCCCAGCATTTTAAGGGATTGCATTGCATTCGCCAAAGGATGTGAAGACTGTCAAGCACATGGTCCAGTCCAGCATGTCCCCAACATTCCCATGCAACCTATAATTAAGCCTTGGCCTGCGCGCGGCTGGGCATTGGACCTGATTGGGATGATCCACCCCCATTCTTCTCTCCAACATAAGTTCATCATCGTGGCTACAGACTTCTTCACCAAGTGGGTCGAAGCTGAACCTTTGAAGGAGGCCTCTGGCACCACCATTTGCCAGTTCATTTTTCACCGGGGGGTAGAGTTCATGGGAGGTCCCGTCGAGCAACTTGTCAATGATTTCGGTATCCAGTTCATCCACAGCACTCCGTATTATGCTCAGTCCAACAGTCAAGCGGAAGCTAGCAACAAGATTATTATTACCCTGAATCCCACCGCTACGACACCTTATGCACTCATGTTTGGTCATGACGCTGTTTTACCCTTGGAAATCAACGTTCATTCCCTACGCGTACAAGAGCAGCATCATTTGATCGGTGAAGATTACGTTCAGGCGATGTGGCAAGAACACGAAGATTTGAGTGAGCAGTGCTTAGCAGCTTTGAACAATTTGGTGATGGAGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

273

Amino Acids

30.99

Weight (kDa)

5.58

Isoelectric Point (pI)

32.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000160)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11612 FvH4_2g25851 FvH4_3g22802 FvH4_3g22805 FvH4_3g31361 FvH4_3g31382 FvH4_4g05272 FvH4_4g05273 FvH4_4g14567 FvH4_4g15161 FvH4_5g22540 FvH4_6g13113 FvH4_6g31923 FvH4_6g31924 FvH4_6g33651 FvH4_6g45122 FvH4_7g03662
pyrus_communis pycom01g04240 pycom01g24010 pycom02g18210 pycom02g19420 pycom05g06510 pycom09g15750 pycom09g18940 pycom12g02580 pycom12g03100 pycom12g08310 pycom13g22710 pycom13g28060 pycom16g18340 pycom16g18350 pycom16g24880 pycom16g26240 pycom461g00260 pycom520g00980 pycom520g01320
rosa_chinensis RchiOBHm_Chr1g0320731 RchiOBHm_Chr2g0102771 RchiOBHm_Chr3g0462151 RchiOBHm_Chr5g0038141 RchiOBHm_Chr5g0069371 RchiOBHm_Chr7g0239101
rosa_multiflora Rmu_co8038252.1_g000001 Rmu_co8138412.1_g000001 Rmu_co8331087.1_g000001 Rmu_co8479311.1_g000001 Rmu_sc0000112.1_g000018 Rmu_sc0000346.1_g000012 Rmu_sc0002102.1_g000002 Rmu_sc0003505.1_g000013 Rmu_sc0004249.1_g000007 Rmu_sc0004448.1_g000010 Rmu_sc0004594.1_g000011 Rmu_sc0004915.1_g000010 Rmu_sc0008019.1_g000019 Rmu_sc0008303.1_g000001 Rmu_sc0008355.1_g000005 Rmu_sc0009253.1_g000018 Rmu_sc0010211.1_g000002 Rmu_sc0010252.1_g000009 Rmu_sc0011534.1_g000008 Rmu_sc0014811.1_g000009 Rmu_sc0019475.1_g000001 Rmu_sc0024897.1_g000001 Rmu_sc0024898.1_g000001 Rmu_sc0031791.1_g000001 Rmu_sc0038715.1_g000001
rosa_roxburghii Rroxscaffold_165G00436940 Rroxscaffold_174G00435270 Rroxscaffold_177G00434330 Rroxscaffold_177G00434340 Rroxscaffold_177G00434350 Rroxscaffold_1G00002160 Rroxscaffold_1G00025260 Rroxscaffold_1G00042950 Rroxscaffold_1G00068010 Rroxscaffold_2G00107530 Rroxscaffold_3G00221190 Rroxscaffold_3G00221520 Rroxscaffold_3G00223200 Rroxscaffold_4G00322230 Rroxscaffold_4G00331810 Rroxscaffold_5G00385150 Rroxscaffold_5G00387510 Rroxscaffold_6G00410520 Rroxscaffold_6G00423360 Rroxscaffold_6G00423370 Rroxscaffold_6G00429210 Rroxscaffold_7G00158300 Rroxscaffold_7G00163480 Rroxscaffold_7G00171410 Rroxscaffold_7G00178940 Rroxscaffold_7G00199480 Rroxscaffold_7G00205630 Rroxscaffold_7G00207440
rosa_rugosa Rorug01G0056400 Rorug04G0063900 Rorug05G0251400 Rorug07G0221900
rosa_samantha Rh1DG169400 Rh2AG292900 Rh2DG519200 Rh4DG260600 Rh5AG042600 Rh6BG117500
rosa_wichuraiana Rw0G001900 Rw0G005150 Rw0G006380 Rw0G015140 Rw0G016320 Rw0G019440 Rw0G019840 Rw0G023740 Rw1G001590 Rw1G002180 Rw1G003560 Rw1G004280 Rw1G006110 Rw1G006680 Rw1G007920 Rw1G008480 Rw1G009120 Rw1G010310 Rw1G014900 Rw1G019650 Rw1G022070 Rw1G022170 Rw1G041570 Rw2G002740 Rw2G005760 Rw2G032370 Rw2G046770 Rw2G050600 Rw2G051420 Rw3G015930 Rw3G016280 Rw3G019580 Rw3G028420 Rw4G003430 Rw4G005350 Rw4G007530 Rw4G008150 Rw4G009580 Rw4G010250 Rw4G015800 Rw4G017000 Rw4G017910 Rw4G018510 Rw4G019700 Rw4G031010 Rw5G012650 Rw5G020140 Rw5G022060 Rw5G034420 Rw5G035560 Rw5G043010 Rw5G046750 Rw5G047340 Rw5G049500 Rw6G001390 Rw6G002210 Rw6G004530 Rw6G004770 Rw6G005100 Rw6G005890 Rw6G011860 Rw6G014680 Rw6G019480 Rw6G028970 Rw6G033800 Rw7G013050 Rw7G014800 Rw7G025760 Rw7G025850 Rw7G026730 Rw7G026870 Rw7G036330 Rw7G036430 Rw7G039320 Rw7G039510 Rw7G039560 Rw7G041370 Rw7G042050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 458
AccII CGCG 7 cut(s) 9, 63, 132, 193, 331, 333, 705
AciI CCGC 5 cut(s) 132, 191, 333, 590, 630
AclI AACGTT 1 cut(s) 690
AclWI GGATC 3 cut(s) 33, 182, 355
AcoI YGGCCR 1 cut(s) 99
AcyI GRCGYC 1 cut(s) 39
AdeI CACNNNGTG 1 cut(s) 423
AfaI GTAC 2 cut(s) 53, 708
AfiI CCNNNNNNNGG 2 cut(s) 197, 332
AflIII ACRYGT 1 cut(s) 703
AgsI TTSAA 3 cut(s) 118, 445, 799
AluBI AGCT 5 cut(s) 19, 88, 434, 596, 794
AluI AGCT 5 cut(s) 19, 88, 434, 596, 794
Alw21I GWGCWC 1 cut(s) 90
AlwI GGATC 3 cut(s) 33, 182, 355
AoxI GGCC 4 cut(s) 99, 209, 323, 450
ApeKI GCWGC 3 cut(s) 77, 715, 791
AspLEI GCGC 4 cut(s) 11, 69, 331, 333
AspS9I GGNCC 4 cut(s) 210, 272, 346, 509
AsuC2I CCSGG 1 cut(s) 488
AsuHPI GGTGA 4 cut(s) 409, 476, 743, 820
AsuNHI GCTAGC 1 cut(s) 596
AvaII GGWCC 3 cut(s) 272, 346, 509
BalI TGGCCA 1 cut(s) 101
BanI GGYRCC 1 cut(s) 458
BanII GRGCYC 1 cut(s) 90
BbsI GAAGAC 1 cut(s) 261
Bbv12I GWGCWC 1 cut(s) 90
BbvI GCAGC 3 cut(s) 89, 727, 803
BccI CCATC 1 cut(s) 805
BcgI CGANNNNNNTGC 2 cut(s) 220, 254
BciVI GTATCC 1 cut(s) 551
BcnI CCSGG 1 cut(s) 488
BfaI CTAG 1 cut(s) 597
BfmI CTRYAG 1 cut(s) 405
BfuI GTATCC 1 cut(s) 551
BisI GCNGC 4 cut(s) 78, 334, 716, 792
BlpI GCTNAGC 1 cut(s) 787
BlsI GCNGC 4 cut(s) 79, 335, 717, 793
Bme1390I CCNGG 1 cut(s) 488
Bme18I GGWCC 3 cut(s) 272, 346, 509
BmgT120I GGNCC 4 cut(s) 210, 272, 346, 509
BmiI GGNNCC 2 cut(s) 460, 511
BmrFI CCNGG 1 cut(s) 488
BmsI GCATC 1 cut(s) 727
BmtI GCTAGC 1 cut(s) 600
BpiI GAAGAC 1 cut(s) 261
Bpu1102I GCTNAGC 1 cut(s) 787
BpuMI CCSGG 1 cut(s) 488
BsaHI GRCGYC 1 cut(s) 39
BsaJI CCNNGG 3 cut(s) 320, 487, 678
BsaXI ACNNNNNCTCC 2 cut(s) 498, 528
Bsc4I CCNNNNNNNGG 2 cut(s) 197, 332
Bse1I ACTGG 5 cut(s) 102, 212, 275, 472, 544
Bse3DI GCAATG 1 cut(s) 231
BseDI CCNNGG 3 cut(s) 320, 487, 678
BseGI GGATG 4 cut(s) 54, 254, 363, 549
BseLI CCNNNNNNNGG 2 cut(s) 197, 332
BseMI GCAATG 1 cut(s) 231
BseMII CTCAG 1 cut(s) 587
BseNI ACTGG 5 cut(s) 102, 212, 275, 472, 544
BsePI GCGCGC 1 cut(s) 329
BseXI GCAGC 3 cut(s) 89, 727, 803
BseYI CCCAGC 2 cut(s) 212, 336
Bsh1236I CGCG 7 cut(s) 9, 63, 132, 193, 331, 333, 705
BshFI GGCC 4 cut(s) 101, 211, 325, 452
BshNI GGYRCC 1 cut(s) 458
BsiHKAI GWGCWC 1 cut(s) 90
BsiSI CCGG 1 cut(s) 487
BslFI GGGAC 2 cut(s) 272, 495
BslI CCNNNNNNNGG 2 cut(s) 197, 332
BsmFI GGGAC 2 cut(s) 272, 495
BsmI GAATGC 1 cut(s) 236
BsnI GGCC 4 cut(s) 101, 211, 325, 452
Bsp1286I GDGCHC 1 cut(s) 90
Bsp143I GATC 4 cut(s) 25, 187, 360, 726
Bsp1720I GCTNAGC 1 cut(s) 787
Bsp68I TCGCGA 1 cut(s) 63
BspACI CCGC 5 cut(s) 132, 191, 333, 590, 630
BspANI GGCC 4 cut(s) 101, 211, 325, 452
BspCNI CTCAG 1 cut(s) 586
BspFNI CGCG 7 cut(s) 9, 63, 132, 193, 331, 333, 705
BspHI TCATGA 1 cut(s) 661
BspLI GGNNCC 2 cut(s) 460, 511
BspOI GCTAGC 1 cut(s) 600
BspPI GGATC 3 cut(s) 33, 182, 355
BspT107I GGYRCC 1 cut(s) 458
BsrDI GCAATG 1 cut(s) 231
BsrI ACTGG 5 cut(s) 102, 212, 275, 472, 544
BssECI CCNNGG 3 cut(s) 320, 487, 678
BssHII GCGCGC 1 cut(s) 329
BssMI GATC 4 cut(s) 25, 187, 360, 726
BssNI GRCGYC 1 cut(s) 39
BssT1I CCWWGG 2 cut(s) 320, 678
Bst4CI ACNGT 3 cut(s) 183, 260, 584
BstACI GRCGYC 1 cut(s) 39
BstC8I GCNNGC 7 cut(s) 65, 90, 134, 177, 327, 331, 598
BstDEI CTNAG 2 cut(s) 573, 787
BstF5I GGATG 4 cut(s) 54, 254, 363, 549
BstFNI CGCG 7 cut(s) 9, 63, 132, 193, 331, 333, 705
BstHHI GCGC 4 cut(s) 11, 69, 331, 333
BstKTI GATC 4 cut(s) 28, 190, 363, 729
BstMBI GATC 4 cut(s) 25, 187, 360, 726
BstMWI GCNNNNNNNGC 1 cut(s) 98
BstNSI RCATGY 1 cut(s) 287
BstSCI CCNGG 1 cut(s) 486
BstSFI CTRYAG 1 cut(s) 405
BstUI CGCG 7 cut(s) 9, 63, 132, 193, 331, 333, 705
BstV1I GCAGC 3 cut(s) 89, 727, 803
BstV2I GAAGAC 1 cut(s) 261
BsuI GTATCC 1 cut(s) 551
BsuRI GGCC 4 cut(s) 101, 211, 325, 452
BtgZI GCGATG 1 cut(s) 764
BtsCI GGATG 4 cut(s) 54, 254, 363, 549
BtsI GCAGTG 1 cut(s) 788
BtsIMutI CAGTG 1 cut(s) 788
BtuMI TCGCGA 1 cut(s) 63
Cac8I GCNNGC 7 cut(s) 65, 90, 134, 177, 327, 331, 598
CciI TCATGA 1 cut(s) 661
CfoI GCGC 4 cut(s) 11, 69, 331, 333
Cfr13I GGNCC 4 cut(s) 210, 272, 346, 509
CseI GACGC 2 cut(s) 47, 674
Csp6I GTAC 2 cut(s) 52, 707
CviAII CATG 8 cut(s) 171, 197, 269, 284, 301, 502, 652, 662
CviQI GTAC 2 cut(s) 52, 707
DdeI CTNAG 2 cut(s) 573, 787
DpnI GATC 4 cut(s) 27, 189, 362, 728
DpnII GATC 4 cut(s) 25, 187, 360, 726
DraIII CACNNNGTG 1 cut(s) 423
EaeI YGGCCR 1 cut(s) 99
Ecl136II GAGCTC 1 cut(s) 88
Eco130I CCWWGG 2 cut(s) 320, 678
Eco147I AGGCCT 1 cut(s) 452
Eco24I GRGCYC 1 cut(s) 90
Eco47I GGWCC 3 cut(s) 272, 346, 509
Eco53kI GAGCTC 1 cut(s) 88
EcoICRI GAGCTC 1 cut(s) 88
EcoO109I RGGNCCY 1 cut(s) 509
EcoT14I CCWWGG 2 cut(s) 320, 678
EcoT38I GRGCYC 1 cut(s) 90
ErhI CCWWGG 2 cut(s) 320, 678
FaeI CATG 8 cut(s) 174, 200, 272, 287, 304, 505, 655, 665
FaqI GGGAC 2 cut(s) 272, 495
FatI CATG 8 cut(s) 170, 196, 268, 283, 300, 501, 651, 661
FauI CCCGC 1 cut(s) 125
Fnu4HI GCNGC 4 cut(s) 78, 334, 716, 792
FokI GGATG 4 cut(s) 41, 261, 370, 536
FriOI GRGCYC 1 cut(s) 90
Fsp4HI GCNGC 4 cut(s) 78, 334, 716, 792
FspBI CTAG 1 cut(s) 597
GlaI GCGC 4 cut(s) 10, 68, 330, 332
GluI GCNGC 4 cut(s) 78, 334, 716, 792
GsaI CCCAGC 2 cut(s) 216, 340
HaeIII GGCC 4 cut(s) 101, 211, 325, 452
HapII CCGG 1 cut(s) 487
HgaI GACGC 2 cut(s) 47, 674
HhaI GCGC 4 cut(s) 11, 69, 331, 333
Hin1I GRCGYC 1 cut(s) 39
Hin1II CATG 8 cut(s) 174, 200, 272, 287, 304, 505, 655, 665
Hin6I GCGC 4 cut(s) 9, 67, 329, 331
HinP1I GCGC 4 cut(s) 9, 67, 329, 331
HinfI GANTC 2 cut(s) 4, 622
HpaII CCGG 1 cut(s) 487
HphI GGTGA 4 cut(s) 409, 476, 743, 820
Hpy188I TCNGA 2 cut(s) 144, 187
Hpy188III TCNNGA 2 cut(s) 62, 662
Hpy99I CGWCG 2 cut(s) 41, 518
HpyAV CCTTC 2 cut(s) 177, 439
HpyCH4III ACNGT 3 cut(s) 183, 260, 584
HpyCH4IV ACGT 2 cut(s) 690, 741
HpyCH4V TGCA 6 cut(s) 77, 159, 231, 236, 304, 647
HpyF10VI GCNNNNNNNGC 1 cut(s) 98
HpyF3I CTNAG 2 cut(s) 573, 787
HpySE526I ACGT 2 cut(s) 690, 741
Hsp92I GRCGYC 1 cut(s) 39
Hsp92II CATG 8 cut(s) 174, 200, 272, 287, 304, 505, 655, 665
HspAI GCGC 4 cut(s) 9, 67, 329, 331
Kzo9I GATC 4 cut(s) 25, 187, 360, 726
Lsp1109I GCAGC 3 cut(s) 89, 727, 803
LweI GCATC 1 cut(s) 727
MaeI CTAG 1 cut(s) 597
MaeII ACGT 2 cut(s) 690, 741
MalI GATC 4 cut(s) 27, 189, 362, 728
MboI GATC 4 cut(s) 25, 187, 360, 726
MboII GAAGA 5 cut(s) 266, 366, 406, 746, 779
MhlI GDGCHC 1 cut(s) 90
MlsI TGGCCA 1 cut(s) 101
MluCI AATT 4 cut(s) 29, 70, 312, 802
MluI ACGCGT 1 cut(s) 703
MluNI TGGCCA 1 cut(s) 101
MmeI TCCRAC 2 cut(s) 406, 603
MnlI CCTC 4 cut(s) 69, 442, 463, 500
Mox20I TGGCCA 1 cut(s) 101
MscI TGGCCA 1 cut(s) 101
MseI TTAA 2 cut(s) 221, 315
MslI CAYNNNNRTG 2 cut(s) 299, 398
Msp20I TGGCCA 1 cut(s) 101
MspI CCGG 1 cut(s) 487
MspR9I CCNGG 1 cut(s) 488
Mva1269I GAATGC 1 cut(s) 236
MvnI CGCG 7 cut(s) 9, 63, 132, 193, 331, 333, 705
MwoI GCNNNNNNNGC 1 cut(s) 98
NciI CCSGG 1 cut(s) 488
NdeII GATC 4 cut(s) 25, 187, 360, 726
NheI GCTAGC 1 cut(s) 596
NlaIII CATG 8 cut(s) 174, 200, 272, 287, 304, 505, 655, 665
NlaIV GGNNCC 2 cut(s) 460, 511
NruI TCGCGA 1 cut(s) 63
NspI RCATGY 1 cut(s) 287
PagI TCATGA 1 cut(s) 661
PauI GCGCGC 1 cut(s) 329
PceI AGGCCT 1 cut(s) 452
PctI GAATGC 1 cut(s) 236
PfeI GAWTC 2 cut(s) 4, 622
PkrI GCNGC 4 cut(s) 79, 335, 717, 793
PpuMI RGGWCCY 1 cut(s) 509
Psp124BI GAGCTC 1 cut(s) 90
Psp1406I AACGTT 1 cut(s) 690
Psp5II RGGWCCY 1 cut(s) 509
PspFI CCCAGC 2 cut(s) 212, 336
PspN4I GGNNCC 2 cut(s) 460, 511
PspPI GGNCC 4 cut(s) 210, 272, 346, 509
PspPPI RGGWCCY 1 cut(s) 509
PteI GCGCGC 1 cut(s) 329
RruI TCGCGA 1 cut(s) 63
RsaI GTAC 2 cut(s) 53, 708
RsaNI GTAC 2 cut(s) 52, 707
RseI CAYNNNNRTG 2 cut(s) 299, 398
SacI GAGCTC 1 cut(s) 90
SaqAI TTAA 2 cut(s) 221, 315
SatI GCNGC 4 cut(s) 78, 334, 716, 792
Sau3AI GATC 4 cut(s) 25, 187, 360, 726
Sau96I GGNCC 4 cut(s) 210, 272, 346, 509
ScrFI CCNGG 1 cut(s) 488
SduI GDGCHC 1 cut(s) 90
SfaNI GCATC 1 cut(s) 727
SfcI CTRYAG 1 cut(s) 405
SinI GGWCC 3 cut(s) 272, 346, 509
SmiMI CAYNNNNRTG 2 cut(s) 299, 398
Sse9I AATT 4 cut(s) 29, 70, 312, 802
SseBI AGGCCT 1 cut(s) 452
SsiI CCGC 5 cut(s) 132, 191, 333, 590, 630
SspMI CTAG 1 cut(s) 597
SstI GAGCTC 1 cut(s) 90
StuI AGGCCT 1 cut(s) 452
StyD4I CCNGG 1 cut(s) 486
StyI CCWWGG 2 cut(s) 320, 678
TaaI ACNGT 3 cut(s) 183, 260, 584
TaiI ACGT 2 cut(s) 693, 744
TaqI TCGA 3 cut(s) 150, 429, 516
TasI AATT 4 cut(s) 29, 70, 312, 802
TatI WGTACW 1 cut(s) 51
TauI GCSGC 1 cut(s) 336
TfiI GAWTC 2 cut(s) 4, 622
Tru1I TTAA 2 cut(s) 221, 315
Tru9I TTAA 2 cut(s) 221, 315
TscAI CASTG 1 cut(s) 788
TseI GCWGC 3 cut(s) 77, 715, 791
TspDTI ATGAA 7 cut(s) 17, 159, 382, 466, 490, 538, 683
TspGWI ACGGA 1 cut(s) 552
TspRI CASTG 1 cut(s) 788
VpaK11BI GGWCC 3 cut(s) 272, 346, 509
XceI RCATGY 1 cut(s) 287
XcmI CCANNNNNNNNNTGG 1 cut(s) 19
XspI CTAG 1 cut(s) 597
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.