Rmu_sc0008019.1_g000019

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008019.1
OG0000160
Physical Location & Seq
Forward (+)
50638 .. 50964
327 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008019.1_g000019.1.cds

Sequence Viewer

Length: 327 bp
atggaatatataccacgcgaacgtaactttgcggctaatgagctcactcaattggctacaggcatcaccttgaagtacggtgtgcgcgagcgcattttgaaagttgagcgtcgcacactaccatcatggcttgcccgacctgatccaccagacgagcccgcggttgcggtacttgagcctattgatacagattggcagattccactgattgagtacctcaaacaaccagaccccagagcggacaggagggttcgtttcctcgccttaaattacttccttcgaggcgatgaattgcgacgacgcggggaggatggtatagatttctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

108

Amino Acids

12.72

Weight (kDa)

5.54

Isoelectric Point (pI)

42.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000160)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11612 FvH4_2g25851 FvH4_3g22802 FvH4_3g22805 FvH4_3g31361 FvH4_3g31382 FvH4_4g05272 FvH4_4g05273 FvH4_4g14567 FvH4_4g15161 FvH4_5g22540 FvH4_6g13113 FvH4_6g31923 FvH4_6g31924 FvH4_6g33651 FvH4_6g45122 FvH4_7g03662
pyrus_communis pycom01g04240 pycom01g24010 pycom02g18210 pycom02g19420 pycom05g06510 pycom09g15750 pycom09g18940 pycom12g02580 pycom12g03100 pycom12g08310 pycom13g22710 pycom13g28060 pycom16g18340 pycom16g18350 pycom16g24880 pycom16g26240 pycom461g00260 pycom520g00980 pycom520g01320
rosa_chinensis RchiOBHm_Chr1g0320731 RchiOBHm_Chr2g0102771 RchiOBHm_Chr3g0462151 RchiOBHm_Chr5g0038141 RchiOBHm_Chr5g0069371 RchiOBHm_Chr7g0239101
rosa_multiflora Rmu_co8038252.1_g000001 Rmu_co8138412.1_g000001 Rmu_co8331087.1_g000001 Rmu_co8479311.1_g000001 Rmu_sc0000112.1_g000018 Rmu_sc0000346.1_g000012 Rmu_sc0002102.1_g000002 Rmu_sc0003505.1_g000013 Rmu_sc0004249.1_g000007 Rmu_sc0004448.1_g000010 Rmu_sc0004594.1_g000011 Rmu_sc0004915.1_g000010 Rmu_sc0008019.1_g000019 Rmu_sc0008303.1_g000001 Rmu_sc0008355.1_g000005 Rmu_sc0009253.1_g000018 Rmu_sc0010211.1_g000002 Rmu_sc0010252.1_g000009 Rmu_sc0011534.1_g000008 Rmu_sc0014811.1_g000009 Rmu_sc0019475.1_g000001 Rmu_sc0024897.1_g000001 Rmu_sc0024898.1_g000001 Rmu_sc0031791.1_g000001 Rmu_sc0038715.1_g000001
rosa_roxburghii Rroxscaffold_165G00436940 Rroxscaffold_174G00435270 Rroxscaffold_177G00434330 Rroxscaffold_177G00434340 Rroxscaffold_177G00434350 Rroxscaffold_1G00002160 Rroxscaffold_1G00025260 Rroxscaffold_1G00042950 Rroxscaffold_1G00068010 Rroxscaffold_2G00107530 Rroxscaffold_3G00221190 Rroxscaffold_3G00221520 Rroxscaffold_3G00223200 Rroxscaffold_4G00322230 Rroxscaffold_4G00331810 Rroxscaffold_5G00385150 Rroxscaffold_5G00387510 Rroxscaffold_6G00410520 Rroxscaffold_6G00423360 Rroxscaffold_6G00423370 Rroxscaffold_6G00429210 Rroxscaffold_7G00158300 Rroxscaffold_7G00163480 Rroxscaffold_7G00171410 Rroxscaffold_7G00178940 Rroxscaffold_7G00199480 Rroxscaffold_7G00205630 Rroxscaffold_7G00207440
rosa_rugosa Rorug01G0056400 Rorug04G0063900 Rorug05G0251400 Rorug07G0221900
rosa_samantha Rh1DG169400 Rh2AG292900 Rh2DG519200 Rh4DG260600 Rh5AG042600 Rh6BG117500
rosa_wichuraiana Rw0G001900 Rw0G005150 Rw0G006380 Rw0G015140 Rw0G016320 Rw0G019440 Rw0G019840 Rw0G023740 Rw1G001590 Rw1G002180 Rw1G003560 Rw1G004280 Rw1G006110 Rw1G006680 Rw1G007920 Rw1G008480 Rw1G009120 Rw1G010310 Rw1G014900 Rw1G019650 Rw1G022070 Rw1G022170 Rw1G041570 Rw2G002740 Rw2G005760 Rw2G032370 Rw2G046770 Rw2G050600 Rw2G051420 Rw3G015930 Rw3G016280 Rw3G019580 Rw3G028420 Rw4G003430 Rw4G005350 Rw4G007530 Rw4G008150 Rw4G009580 Rw4G010250 Rw4G015800 Rw4G017000 Rw4G017910 Rw4G018510 Rw4G019700 Rw4G031010 Rw5G012650 Rw5G020140 Rw5G022060 Rw5G034420 Rw5G035560 Rw5G043010 Rw5G046750 Rw5G047340 Rw5G049500 Rw6G001390 Rw6G002210 Rw6G004530 Rw6G004770 Rw6G005100 Rw6G005890 Rw6G011860 Rw6G014680 Rw6G019480 Rw6G028970 Rw6G033800 Rw7G013050 Rw7G014800 Rw7G025760 Rw7G025850 Rw7G026730 Rw7G026870 Rw7G036330 Rw7G036430 Rw7G039320 Rw7G039510 Rw7G039560 Rw7G041370 Rw7G042050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 239
AccII CGCG 4 cut(s) 18, 87, 161, 303
AciI CCGC 6 cut(s) 32, 159, 161, 167, 239, 303
AclWI GGATC 1 cut(s) 137
AfaI GTAC 3 cut(s) 77, 171, 215
AfiI CCNNNNNNNGG 1 cut(s) 238
AgsI TTSAA 2 cut(s) 73, 100
AluBI AGCT 1 cut(s) 43
AluI AGCT 1 cut(s) 43
Alw21I GWGCWC 1 cut(s) 45
AlwI GGATC 1 cut(s) 137
AspLEI GCGC 2 cut(s) 87, 93
AsuHPI GGTGA 1 cut(s) 58
BanII GRGCYC 2 cut(s) 45, 159
Bbv12I GWGCWC 1 cut(s) 45
BccI CCATC 2 cut(s) 130, 305
BfmI CTRYAG 1 cut(s) 57
BisI GCNGC 1 cut(s) 33
BlsI GCNGC 1 cut(s) 34
BmsI GCATC 1 cut(s) 72
BpuEI CTTGAG 1 cut(s) 194
BsaJI CCNNGG 1 cut(s) 159
BsaXI ACNNNNNCTCC 2 cut(s) 238, 268
Bsc4I CCNNNNNNNGG 1 cut(s) 238
BseDI CCNNGG 1 cut(s) 159
BseGI GGATG 1 cut(s) 316
BseLI CCNNNNNNNGG 1 cut(s) 238
Bsh1236I CGCG 4 cut(s) 18, 87, 161, 303
BsiHKAI GWGCWC 1 cut(s) 45
BslI CCNNNNNNNGG 1 cut(s) 238
Bsp1286I GDGCHC 2 cut(s) 45, 159
Bsp143I GATC 1 cut(s) 142
BspACI CCGC 6 cut(s) 32, 159, 161, 167, 239, 303
BspFNI CGCG 4 cut(s) 18, 87, 161, 303
BspPI GGATC 1 cut(s) 137
BsrBI CCGCTC 1 cut(s) 239
BssECI CCNNGG 1 cut(s) 159
BssMI GATC 1 cut(s) 142
Bst4CI ACNGT 1 cut(s) 80
BstC8I GCNNGC 3 cut(s) 89, 132, 159
BstDSI CCRYGG 1 cut(s) 159
BstF5I GGATG 1 cut(s) 316
BstFNI CGCG 4 cut(s) 18, 87, 161, 303
BstHHI GCGC 2 cut(s) 87, 93
BstKTI GATC 1 cut(s) 145
BstMBI GATC 1 cut(s) 142
BstSFI CTRYAG 1 cut(s) 57
BstUI CGCG 4 cut(s) 18, 87, 161, 303
BtgI CCRYGG 1 cut(s) 159
BtgZI GCGATG 1 cut(s) 300
BtsCI GGATG 1 cut(s) 316
BtsIMutI CAGTG 1 cut(s) 203
Cac8I GCNNGC 3 cut(s) 89, 132, 159
CfoI GCGC 2 cut(s) 87, 93
Cfr42I CCGCGG 1 cut(s) 162
CseI GACGC 2 cut(s) 98, 309
Csp6I GTAC 3 cut(s) 76, 170, 214
CviAII CATG 1 cut(s) 126
CviJI RGCY 6 cut(s) 35, 43, 56, 130, 157, 178
CviKI_1 RGCY 6 cut(s) 35, 43, 56, 130, 157, 178
CviQI GTAC 3 cut(s) 76, 170, 214
DpnI GATC 1 cut(s) 144
DpnII GATC 1 cut(s) 142
Ecl136II GAGCTC 1 cut(s) 43
Eco24I GRGCYC 2 cut(s) 45, 159
Eco53kI GAGCTC 1 cut(s) 43
EcoICRI GAGCTC 1 cut(s) 43
EcoT38I GRGCYC 2 cut(s) 45, 159
FaeI CATG 1 cut(s) 129
FaiI YATR 4 cut(s) 9, 11, 127, 317
FatI CATG 1 cut(s) 125
FauI CCCGC 2 cut(s) 166, 296
Fnu4HI GCNGC 1 cut(s) 33
FokI GGATG 1 cut(s) 323
FriOI GRGCYC 2 cut(s) 45, 159
Fsp4HI GCNGC 1 cut(s) 33
GlaI GCGC 2 cut(s) 86, 92
GluI GCNGC 1 cut(s) 33
HgaI GACGC 2 cut(s) 98, 309
HhaI GCGC 2 cut(s) 87, 93
Hin1II CATG 1 cut(s) 129
Hin6I GCGC 2 cut(s) 85, 91
HinP1I GCGC 2 cut(s) 85, 91
HinfI GANTC 1 cut(s) 199
HphI GGTGA 1 cut(s) 58
Hpy188I TCNGA 1 cut(s) 326
Hpy99I CGWCG 3 cut(s) 114, 300, 303
HpyAV CCTTC 1 cut(s) 287
HpyCH4III ACNGT 1 cut(s) 80
HpyCH4IV ACGT 1 cut(s) 22
HpySE526I ACGT 1 cut(s) 22
Hsp92II CATG 1 cut(s) 129
HspAI GCGC 2 cut(s) 85, 91
KspI CCGCGG 1 cut(s) 162
Kzo9I GATC 1 cut(s) 142
LpnPI CCDG 6 cut(s) 45, 153, 162, 229, 240, 247
LweI GCATC 1 cut(s) 72
MaeII ACGT 1 cut(s) 22
MaeIII GTNAC 1 cut(s) 23
MalI GATC 1 cut(s) 144
MbiI CCGCTC 1 cut(s) 239
MboI GATC 1 cut(s) 142
MfeI CAATTG 1 cut(s) 50
MhlI GDGCHC 2 cut(s) 45, 159
MluCI AATT 3 cut(s) 50, 268, 290
MnlI CCTC 5 cut(s) 227, 240, 269, 275, 301
MseI TTAA 1 cut(s) 266
MspA1I CMGCKG 1 cut(s) 161
MunI CAATTG 1 cut(s) 50
MvnI CGCG 4 cut(s) 18, 87, 161, 303
NdeII GATC 1 cut(s) 142
NlaIII CATG 1 cut(s) 129
PcsI WCGNNNNNNNCGW 1 cut(s) 84
PfeI GAWTC 1 cut(s) 199
PkrI GCNGC 1 cut(s) 34
Psp124BI GAGCTC 1 cut(s) 45
RsaI GTAC 3 cut(s) 77, 171, 215
RsaNI GTAC 3 cut(s) 76, 170, 214
SacI GAGCTC 1 cut(s) 45
SacII CCGCGG 1 cut(s) 162
SaqAI TTAA 1 cut(s) 266
SatI GCNGC 1 cut(s) 33
Sau3AI GATC 1 cut(s) 142
SduI GDGCHC 2 cut(s) 45, 159
SetI ASST 5 cut(s) 25, 45, 71, 142, 219
SfaNI GCATC 1 cut(s) 72
SfcI CTRYAG 1 cut(s) 57
Sfr303I CCGCGG 1 cut(s) 162
SgrBI CCGCGG 1 cut(s) 162
SmlI CTYRAG 1 cut(s) 173
SmoI CTYRAG 1 cut(s) 173
Sse9I AATT 3 cut(s) 50, 268, 290
SsiI CCGC 6 cut(s) 32, 159, 161, 167, 239, 303
SstI GAGCTC 1 cut(s) 45
TaaI ACNGT 1 cut(s) 80
TaiI ACGT 1 cut(s) 25
TaqI TCGA 1 cut(s) 280
TasI AATT 3 cut(s) 50, 268, 290
TauI GCSGC 1 cut(s) 35
TfiI GAWTC 1 cut(s) 199
Tru1I TTAA 1 cut(s) 266
Tru9I TTAA 1 cut(s) 266
TscAI CASTG 1 cut(s) 210
TspDTI ATGAA 1 cut(s) 303
TspRI CASTG 1 cut(s) 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.