FvH4_3g22802

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000160
Physical Location & Seq
Reverse (-)
15833551 .. 15834172
622 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g22802.t1

Sequence Viewer

Length: 387 bp
ATGGGGAGTGAAGGGCTCCAGATGGGTGAAGCATTGTGGGCGTATAGAACGACATATCGAACCACCACAAATGTCACACCTTACTCTCTAGTGTATGGTGTTGAAGCTGTCTTGCCATTAGAGAAACAAATTCCATCTTTAAGGATTGCTTTGCAAGAAGGCCTCACAAATGAAGAAAACATCAAGTTACGACTTCAAGAGTTGGAAGCCTTGGATGAGAAGAGGCTCGATGCGCAACAACATTTGGAATGCTACCAAGCTCGAATGTCGCGTGCTTTCAACAAAGGGGTTCGGCCTCGATCCTTTCAAATTGGTGACTTGGTCCTTGCTATACGCAGACCCATCATCATGACACACAAGACTGGTCCCAAGTTCAAATCAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

129

Amino Acids

14.66

Weight (kDa)

9.51

Isoelectric Point (pI)

51.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000160)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11612 FvH4_2g25851 FvH4_3g22802 FvH4_3g22805 FvH4_3g31361 FvH4_3g31382 FvH4_4g05272 FvH4_4g05273 FvH4_4g14567 FvH4_4g15161 FvH4_5g22540 FvH4_6g13113 FvH4_6g31923 FvH4_6g31924 FvH4_6g33651 FvH4_6g45122 FvH4_7g03662
pyrus_communis pycom01g04240 pycom01g24010 pycom02g18210 pycom02g19420 pycom05g06510 pycom09g15750 pycom09g18940 pycom12g02580 pycom12g03100 pycom12g08310 pycom13g22710 pycom13g28060 pycom16g18340 pycom16g18350 pycom16g24880 pycom16g26240 pycom461g00260 pycom520g00980 pycom520g01320
rosa_chinensis RchiOBHm_Chr1g0320731 RchiOBHm_Chr2g0102771 RchiOBHm_Chr3g0462151 RchiOBHm_Chr5g0038141 RchiOBHm_Chr5g0069371 RchiOBHm_Chr7g0239101
rosa_multiflora Rmu_co8038252.1_g000001 Rmu_co8138412.1_g000001 Rmu_co8331087.1_g000001 Rmu_co8479311.1_g000001 Rmu_sc0000112.1_g000018 Rmu_sc0000346.1_g000012 Rmu_sc0002102.1_g000002 Rmu_sc0003505.1_g000013 Rmu_sc0004249.1_g000007 Rmu_sc0004448.1_g000010 Rmu_sc0004594.1_g000011 Rmu_sc0004915.1_g000010 Rmu_sc0008019.1_g000019 Rmu_sc0008303.1_g000001 Rmu_sc0008355.1_g000005 Rmu_sc0009253.1_g000018 Rmu_sc0010211.1_g000002 Rmu_sc0010252.1_g000009 Rmu_sc0011534.1_g000008 Rmu_sc0014811.1_g000009 Rmu_sc0019475.1_g000001 Rmu_sc0024897.1_g000001 Rmu_sc0024898.1_g000001 Rmu_sc0031791.1_g000001 Rmu_sc0038715.1_g000001
rosa_roxburghii Rroxscaffold_165G00436940 Rroxscaffold_174G00435270 Rroxscaffold_177G00434330 Rroxscaffold_177G00434340 Rroxscaffold_177G00434350 Rroxscaffold_1G00002160 Rroxscaffold_1G00025260 Rroxscaffold_1G00042950 Rroxscaffold_1G00068010 Rroxscaffold_2G00107530 Rroxscaffold_3G00221190 Rroxscaffold_3G00221520 Rroxscaffold_3G00223200 Rroxscaffold_4G00322230 Rroxscaffold_4G00331810 Rroxscaffold_5G00385150 Rroxscaffold_5G00387510 Rroxscaffold_6G00410520 Rroxscaffold_6G00423360 Rroxscaffold_6G00423370 Rroxscaffold_6G00429210 Rroxscaffold_7G00158300 Rroxscaffold_7G00163480 Rroxscaffold_7G00171410 Rroxscaffold_7G00178940 Rroxscaffold_7G00199480 Rroxscaffold_7G00205630 Rroxscaffold_7G00207440
rosa_rugosa Rorug01G0056400 Rorug04G0063900 Rorug05G0251400 Rorug07G0221900
rosa_samantha Rh1DG169400 Rh2AG292900 Rh2DG519200 Rh4DG260600 Rh5AG042600 Rh6BG117500
rosa_wichuraiana Rw0G001900 Rw0G005150 Rw0G006380 Rw0G015140 Rw0G016320 Rw0G019440 Rw0G019840 Rw0G023740 Rw1G001590 Rw1G002180 Rw1G003560 Rw1G004280 Rw1G006110 Rw1G006680 Rw1G007920 Rw1G008480 Rw1G009120 Rw1G010310 Rw1G014900 Rw1G019650 Rw1G022070 Rw1G022170 Rw1G041570 Rw2G002740 Rw2G005760 Rw2G032370 Rw2G046770 Rw2G050600 Rw2G051420 Rw3G015930 Rw3G016280 Rw3G019580 Rw3G028420 Rw4G003430 Rw4G005350 Rw4G007530 Rw4G008150 Rw4G009580 Rw4G010250 Rw4G015800 Rw4G017000 Rw4G017910 Rw4G018510 Rw4G019700 Rw4G031010 Rw5G012650 Rw5G020140 Rw5G022060 Rw5G034420 Rw5G035560 Rw5G043010 Rw5G046750 Rw5G047340 Rw5G049500 Rw6G001390 Rw6G002210 Rw6G004530 Rw6G004770 Rw6G005100 Rw6G005890 Rw6G011860 Rw6G014680 Rw6G019480 Rw6G028970 Rw6G033800 Rw7G013050 Rw7G014800 Rw7G025760 Rw7G025850 Rw7G026730 Rw7G026870 Rw7G036330 Rw7G036430 Rw7G039320 Rw7G039510 Rw7G039560 Rw7G041370 Rw7G042050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 234
AccII CGCG 1 cut(s) 271
AclWI GGATC 1 cut(s) 294
AcsI RAATTY 1 cut(s) 129
AgsI TTSAA 5 cut(s) 104, 197, 280, 308, 376
AluBI AGCT 2 cut(s) 107, 260
AluI AGCT 2 cut(s) 107, 260
AlwI GGATC 1 cut(s) 294
AoxI GGCC 2 cut(s) 160, 293
ApoI RAATTY 1 cut(s) 129
AspLEI GCGC 1 cut(s) 235
AspS9I GGNCC 2 cut(s) 322, 365
AsuHPI GGTGA 2 cut(s) 38, 326
AvaII GGWCC 2 cut(s) 322, 365
BanII GRGCYC 1 cut(s) 18
BccI CCATC 3 cut(s) 16, 142, 350
BfaI CTAG 1 cut(s) 89
Bme18I GGWCC 2 cut(s) 322, 365
BmgT120I GGNCC 2 cut(s) 322, 365
BmiI GGNNCC 2 cut(s) 17, 367
BmsI GCATC 1 cut(s) 220
BsaJI CCNNGG 1 cut(s) 210
Bse1I ACTGG 1 cut(s) 367
BseDI CCNNGG 1 cut(s) 210
BseGI GGATG 1 cut(s) 220
BseNI ACTGG 1 cut(s) 367
Bsh1236I CGCG 1 cut(s) 271
BshFI GGCC 2 cut(s) 162, 295
BslFI GGGAC 1 cut(s) 351
BsmFI GGGAC 1 cut(s) 351
BsmI GAATGC 1 cut(s) 254
BsnI GGCC 2 cut(s) 162, 295
Bsp1286I GDGCHC 1 cut(s) 18
Bsp143I GATC 1 cut(s) 299
BspANI GGCC 2 cut(s) 162, 295
BspFNI CGCG 1 cut(s) 271
BspHI TCATGA 1 cut(s) 348
BspLI GGNNCC 2 cut(s) 17, 367
BspPI GGATC 1 cut(s) 294
BsrI ACTGG 1 cut(s) 367
BssECI CCNNGG 1 cut(s) 210
BssMI GATC 1 cut(s) 299
BssT1I CCWWGG 1 cut(s) 210
Bst6I CTCTTC 1 cut(s) 215
BstC8I GCNNGC 1 cut(s) 273
BstF5I GGATG 1 cut(s) 220
BstFNI CGCG 1 cut(s) 271
BstHHI GCGC 1 cut(s) 235
BstKTI GATC 1 cut(s) 302
BstMBI GATC 1 cut(s) 299
BstMWI GCNNNNNNNGC 2 cut(s) 38, 232
BstUI CGCG 1 cut(s) 271
BsuRI GGCC 2 cut(s) 162, 295
BtsCI GGATG 1 cut(s) 220
Cac8I GCNNGC 1 cut(s) 273
CciI TCATGA 1 cut(s) 348
CfoI GCGC 1 cut(s) 235
Cfr13I GGNCC 2 cut(s) 322, 365
CviAII CATG 1 cut(s) 349
CviJI RGCY 7 cut(s) 16, 107, 162, 209, 226, 260, 295
CviKI_1 RGCY 7 cut(s) 16, 107, 162, 209, 226, 260, 295
DpnI GATC 1 cut(s) 301
DpnII GATC 1 cut(s) 299
Eam1104I CTCTTC 1 cut(s) 215
EarI CTCTTC 1 cut(s) 215
Eco130I CCWWGG 1 cut(s) 210
Eco147I AGGCCT 1 cut(s) 162
Eco24I GRGCYC 1 cut(s) 18
Eco47I GGWCC 2 cut(s) 322, 365
EcoT14I CCWWGG 1 cut(s) 210
EcoT38I GRGCYC 1 cut(s) 18
ErhI CCWWGG 1 cut(s) 210
FaeI CATG 1 cut(s) 352
FaiI YATR 5 cut(s) 45, 55, 96, 332, 350
FalI AAGNNNNNCTT 2 cut(s) 133, 165
FaqI GGGAC 1 cut(s) 351
FatI CATG 1 cut(s) 348
FokI GGATG 1 cut(s) 227
FriOI GRGCYC 1 cut(s) 18
FspBI CTAG 1 cut(s) 89
FspI TGCGCA 1 cut(s) 234
GlaI GCGC 1 cut(s) 234
HaeIII GGCC 2 cut(s) 162, 295
HhaI GCGC 1 cut(s) 235
Hin1II CATG 1 cut(s) 352
Hin6I GCGC 1 cut(s) 233
HinP1I GCGC 1 cut(s) 233
HphI GGTGA 2 cut(s) 38, 326
Hpy188III TCNNGA 3 cut(s) 19, 197, 349
HpyAV CCTTC 2 cut(s) 5, 152
HpyCH4V TGCA 1 cut(s) 154
HpyF10VI GCNNNNNNNGC 2 cut(s) 38, 232
Hsp92II CATG 1 cut(s) 352
HspAI GCGC 1 cut(s) 233
Kzo9I GATC 1 cut(s) 299
LmnI GCTCC 1 cut(s) 21
LpnPI CCDG 2 cut(s) 32, 348
LweI GCATC 1 cut(s) 220
MaeI CTAG 1 cut(s) 89
MaeIII GTNAC 3 cut(s) 73, 186, 314
MalI GATC 1 cut(s) 301
MboI GATC 1 cut(s) 299
MboII GAAGA 2 cut(s) 185, 232
MhlI GDGCHC 1 cut(s) 18
MluCI AATT 2 cut(s) 129, 309
MmeI TCCRAC 1 cut(s) 183
MnlI CCTC 3 cut(s) 173, 216, 306
MseI TTAA 1 cut(s) 140
MslI CAYNNNNRTG 1 cut(s) 347
Mva1269I GAATGC 1 cut(s) 254
MvnI CGCG 1 cut(s) 271
MwoI GCNNNNNNNGC 2 cut(s) 38, 232
NdeII GATC 1 cut(s) 299
NlaIII CATG 1 cut(s) 352
NlaIV GGNNCC 2 cut(s) 17, 367
NmuCI GTSAC 2 cut(s) 73, 314
NsbI TGCGCA 1 cut(s) 234
PagI TCATGA 1 cut(s) 348
PceI AGGCCT 1 cut(s) 162
PcsI WCGNNNNNNNCGW 1 cut(s) 268
PctI GAATGC 1 cut(s) 254
PflFI GACNNNGTC 1 cut(s) 320
PspN4I GGNNCC 2 cut(s) 17, 367
PspPI GGNCC 2 cut(s) 322, 365
PsyI GACNNNGTC 1 cut(s) 320
RseI CAYNNNNRTG 1 cut(s) 347
SaqAI TTAA 1 cut(s) 140
Sau3AI GATC 1 cut(s) 299
Sau96I GGNCC 2 cut(s) 322, 365
SduI GDGCHC 1 cut(s) 18
SetI ASST 3 cut(s) 82, 109, 262
SfaNI GCATC 1 cut(s) 220
SinI GGWCC 2 cut(s) 322, 365
SmiMI CAYNNNNRTG 1 cut(s) 347
Sse9I AATT 2 cut(s) 129, 309
SseBI AGGCCT 1 cut(s) 162
SspMI CTAG 1 cut(s) 89
StuI AGGCCT 1 cut(s) 162
StyI CCWWGG 1 cut(s) 210
TaqI TCGA 4 cut(s) 58, 228, 262, 298
TasI AATT 2 cut(s) 129, 309
Tru1I TTAA 1 cut(s) 140
Tru9I TTAA 1 cut(s) 140
TseFI GTSAC 2 cut(s) 73, 314
Tsp45I GTSAC 2 cut(s) 73, 314
TspDTI ATGAA 1 cut(s) 186
Tth111I GACNNNGTC 1 cut(s) 320
VpaK11BI GGWCC 2 cut(s) 322, 365
XapI RAATTY 1 cut(s) 129
XspI CTAG 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.