Rmu_sc0011534.1_g000008

Uncharacterized protein K02A2.6-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011534.1
Physical Location & Seq
Forward (+)
10681 .. 11151
471 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011534.1_g000008.1.cds

Sequence Viewer

Length: 471 bp
ctggatcaatttgatgacgctgatttggagtgcatccctcgcgagcgcaatgtcgcagccaatgaactcgctcgactggctaccggcatcacattgaagtatggggttcgcgagcgcattctgaaggtcgagcgtcgcaccctaccttcatggctctcgcgacttgatccacctgatgagccagtcgtggtggtgctggaacctattgatgttgattggcgcattccgttgatggattacctcaaacgaccagaccctacagccgacaggaagattcactttcttggcttaatctacttcctcaggggtgatgagttgcgacgacgaggggaagatggcgtagacttccggtgcgtctatggccgcgaagaaaaaagattaatgctcgaagcacacacaggaatatgtggagctcatcaagctggacctaagatgcagaacctattgatgttgattggcgcattccgttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

156

Amino Acids

18.02

Weight (kDa)

6.37

Isoelectric Point (pI)

31.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000160)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11612 FvH4_2g25851 FvH4_3g22802 FvH4_3g22805 FvH4_3g31361 FvH4_3g31382 FvH4_4g05272 FvH4_4g05273 FvH4_4g14567 FvH4_4g15161 FvH4_5g22540 FvH4_6g13113 FvH4_6g31923 FvH4_6g31924 FvH4_6g33651 FvH4_6g45122 FvH4_7g03662
pyrus_communis pycom01g04240 pycom01g24010 pycom02g18210 pycom02g19420 pycom05g06510 pycom09g15750 pycom09g18940 pycom12g02580 pycom12g03100 pycom12g08310 pycom13g22710 pycom13g28060 pycom16g18340 pycom16g18350 pycom16g24880 pycom16g26240 pycom461g00260 pycom520g00980 pycom520g01320
rosa_chinensis RchiOBHm_Chr1g0320731 RchiOBHm_Chr2g0102771 RchiOBHm_Chr3g0462151 RchiOBHm_Chr5g0038141 RchiOBHm_Chr5g0069371 RchiOBHm_Chr7g0239101
rosa_multiflora Rmu_co8038252.1_g000001 Rmu_co8138412.1_g000001 Rmu_co8331087.1_g000001 Rmu_co8479311.1_g000001 Rmu_sc0000112.1_g000018 Rmu_sc0000346.1_g000012 Rmu_sc0002102.1_g000002 Rmu_sc0003505.1_g000013 Rmu_sc0004249.1_g000007 Rmu_sc0004448.1_g000010 Rmu_sc0004594.1_g000011 Rmu_sc0004915.1_g000010 Rmu_sc0008019.1_g000019 Rmu_sc0008303.1_g000001 Rmu_sc0008355.1_g000005 Rmu_sc0009253.1_g000018 Rmu_sc0010211.1_g000002 Rmu_sc0010252.1_g000009 Rmu_sc0011534.1_g000008 Rmu_sc0014811.1_g000009 Rmu_sc0019475.1_g000001 Rmu_sc0024897.1_g000001 Rmu_sc0024898.1_g000001 Rmu_sc0031791.1_g000001 Rmu_sc0038715.1_g000001
rosa_roxburghii Rroxscaffold_165G00436940 Rroxscaffold_174G00435270 Rroxscaffold_177G00434330 Rroxscaffold_177G00434340 Rroxscaffold_177G00434350 Rroxscaffold_1G00002160 Rroxscaffold_1G00025260 Rroxscaffold_1G00042950 Rroxscaffold_1G00068010 Rroxscaffold_2G00107530 Rroxscaffold_3G00221190 Rroxscaffold_3G00221520 Rroxscaffold_3G00223200 Rroxscaffold_4G00322230 Rroxscaffold_4G00331810 Rroxscaffold_5G00385150 Rroxscaffold_5G00387510 Rroxscaffold_6G00410520 Rroxscaffold_6G00423360 Rroxscaffold_6G00423370 Rroxscaffold_6G00429210 Rroxscaffold_7G00158300 Rroxscaffold_7G00163480 Rroxscaffold_7G00171410 Rroxscaffold_7G00178940 Rroxscaffold_7G00199480 Rroxscaffold_7G00205630 Rroxscaffold_7G00207440
rosa_rugosa Rorug01G0056400 Rorug04G0063900 Rorug05G0251400 Rorug07G0221900
rosa_samantha Rh1DG169400 Rh2AG292900 Rh2DG519200 Rh4DG260600 Rh5AG042600 Rh6BG117500
rosa_wichuraiana Rw0G001900 Rw0G005150 Rw0G006380 Rw0G015140 Rw0G016320 Rw0G019440 Rw0G019840 Rw0G023740 Rw1G001590 Rw1G002180 Rw1G003560 Rw1G004280 Rw1G006110 Rw1G006680 Rw1G007920 Rw1G008480 Rw1G009120 Rw1G010310 Rw1G014900 Rw1G019650 Rw1G022070 Rw1G022170 Rw1G041570 Rw2G002740 Rw2G005760 Rw2G032370 Rw2G046770 Rw2G050600 Rw2G051420 Rw3G015930 Rw3G016280 Rw3G019580 Rw3G028420 Rw4G003430 Rw4G005350 Rw4G007530 Rw4G008150 Rw4G009580 Rw4G010250 Rw4G015800 Rw4G017000 Rw4G017910 Rw4G018510 Rw4G019700 Rw4G031010 Rw5G012650 Rw5G020140 Rw5G022060 Rw5G034420 Rw5G035560 Rw5G043010 Rw5G046750 Rw5G047340 Rw5G049500 Rw6G001390 Rw6G002210 Rw6G004530 Rw6G004770 Rw6G005100 Rw6G005890 Rw6G011860 Rw6G014680 Rw6G019480 Rw6G028970 Rw6G033800 Rw7G013050 Rw7G014800 Rw7G025760 Rw7G025850 Rw7G026730 Rw7G026870 Rw7G036330 Rw7G036430 Rw7G039320 Rw7G039510 Rw7G039560 Rw7G041370 Rw7G042050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 342
AccII CGCG 4 cut(s) 42, 111, 160, 366
AciI CCGC 1 cut(s) 364
AclWI GGATC 2 cut(s) 12, 161
AcoI YGGCCR 1 cut(s) 361
AcuI CTGAAG 1 cut(s) 143
AgsI TTSAA 1 cut(s) 97
AluBI AGCT 2 cut(s) 413, 422
AluI AGCT 2 cut(s) 413, 422
Alw21I GWGCWC 1 cut(s) 415
AlwI GGATC 2 cut(s) 12, 161
AoxI GGCC 1 cut(s) 361
ApeKI GCWGC 1 cut(s) 56
AseI ATTAAT 1 cut(s) 380
AspLEI GCGC 4 cut(s) 48, 117, 222, 461
AspS9I GGNCC 1 cut(s) 425
AsuHPI GGTGA 1 cut(s) 320
AvaII GGWCC 1 cut(s) 425
AxyI CCTNAGG 1 cut(s) 302
BanII GRGCYC 1 cut(s) 415
Bbv12I GWGCWC 1 cut(s) 415
BbvI GCAGC 1 cut(s) 68
BccI CCATC 2 cut(s) 226, 329
BfmI CTRYAG 1 cut(s) 258
BisI GCNGC 2 cut(s) 57, 364
BlsI GCNGC 2 cut(s) 58, 365
Bme18I GGWCC 1 cut(s) 425
BmgT120I GGNCC 1 cut(s) 425
BmiI GGNNCC 1 cut(s) 201
BmsI GCATC 3 cut(s) 42, 96, 423
BsaWI WCCGGW 1 cut(s) 348
Bse118I RCCGGY 1 cut(s) 83
Bse1I ACTGG 2 cut(s) 81, 182
Bse21I CCTNAGG 1 cut(s) 302
Bse3DI GCAATG 1 cut(s) 55
BseGI GGATG 1 cut(s) 33
BseMI GCAATG 1 cut(s) 55
BseMII CTCAG 1 cut(s) 316
BseNI ACTGG 2 cut(s) 81, 182
BseXI GCAGC 1 cut(s) 68
Bsh1236I CGCG 4 cut(s) 42, 111, 160, 366
BshFI GGCC 1 cut(s) 363
BsiHKAI GWGCWC 1 cut(s) 415
BsiSI CCGG 2 cut(s) 84, 349
BsmI GAATGC 3 cut(s) 117, 222, 461
BsnI GGCC 1 cut(s) 363
Bsp1286I GDGCHC 1 cut(s) 415
Bsp143I GATC 2 cut(s) 4, 166
Bsp68I TCGCGA 3 cut(s) 42, 111, 160
BspACI CCGC 1 cut(s) 364
BspANI GGCC 1 cut(s) 363
BspCNI CTCAG 1 cut(s) 315
BspFNI CGCG 4 cut(s) 42, 111, 160, 366
BspLI GGNNCC 1 cut(s) 201
BspPI GGATC 2 cut(s) 12, 161
BsrDI GCAATG 1 cut(s) 55
BsrFI RCCGGY 1 cut(s) 83
BsrI ACTGG 2 cut(s) 81, 182
BssAI RCCGGY 1 cut(s) 83
BssMI GATC 2 cut(s) 4, 166
BstC8I GCNNGC 2 cut(s) 44, 113
BstDEI CTNAG 2 cut(s) 302, 429
BstF5I GGATG 1 cut(s) 33
BstFNI CGCG 4 cut(s) 42, 111, 160, 366
BstHHI GCGC 4 cut(s) 48, 117, 222, 461
BstKTI GATC 2 cut(s) 7, 169
BstMBI GATC 2 cut(s) 4, 166
BstMWI GCNNNNNNNGC 4 cut(s) 39, 77, 360, 419
BstSFI CTRYAG 1 cut(s) 258
BstUI CGCG 4 cut(s) 42, 111, 160, 366
BstV1I GCAGC 1 cut(s) 68
Bsu36I CCTNAGG 1 cut(s) 302
BsuRI GGCC 1 cut(s) 363
BtsCI GGATG 1 cut(s) 33
BtuMI TCGCGA 3 cut(s) 42, 111, 160
Cac8I GCNNGC 2 cut(s) 44, 113
CfoI GCGC 4 cut(s) 48, 117, 222, 461
Cfr10I RCCGGY 1 cut(s) 83
Cfr13I GGNCC 1 cut(s) 425
CseI GACGC 3 cut(s) 26, 122, 343
CviAII CATG 1 cut(s) 150
CviJI RGCY 9 cut(s) 59, 80, 154, 181, 263, 288, 363, 413, 422
CviKI_1 RGCY 9 cut(s) 59, 80, 154, 181, 263, 288, 363, 413, 422
DdeI CTNAG 2 cut(s) 302, 429
DpnI GATC 2 cut(s) 6, 168
DpnII GATC 2 cut(s) 4, 166
EaeI YGGCCR 1 cut(s) 361
Ecl136II GAGCTC 1 cut(s) 413
Eco24I GRGCYC 1 cut(s) 415
Eco47I GGWCC 1 cut(s) 425
Eco53kI GAGCTC 1 cut(s) 413
Eco57I CTGAAG 1 cut(s) 143
Eco81I CCTNAGG 1 cut(s) 302
EcoICRI GAGCTC 1 cut(s) 413
EcoT38I GRGCYC 1 cut(s) 415
FaeI CATG 1 cut(s) 153
FaiI YATR 4 cut(s) 102, 151, 360, 406
FalI AAGNNNNNCTT 2 cut(s) 263, 295
FatI CATG 1 cut(s) 149
FblI GTMKAC 1 cut(s) 342
Fnu4HI GCNGC 2 cut(s) 57, 364
FokI GGATG 1 cut(s) 20
FriOI GRGCYC 1 cut(s) 415
Fsp4HI GCNGC 2 cut(s) 57, 364
GlaI GCGC 4 cut(s) 47, 116, 221, 460
GluI GCNGC 2 cut(s) 57, 364
HaeIII GGCC 1 cut(s) 363
HapII CCGG 2 cut(s) 84, 349
HgaI GACGC 3 cut(s) 26, 122, 343
HhaI GCGC 4 cut(s) 48, 117, 222, 461
Hin1II CATG 1 cut(s) 153
Hin6I GCGC 4 cut(s) 46, 115, 220, 459
HinP1I GCGC 4 cut(s) 46, 115, 220, 459
HinfI GANTC 1 cut(s) 274
HpaII CCGG 2 cut(s) 84, 349
HphI GGTGA 1 cut(s) 320
Hpy166II GTNNAC 1 cut(s) 343
Hpy188I TCNGA 1 cut(s) 123
Hpy188III TCNNGA 3 cut(s) 41, 110, 159
Hpy8I GTNNAC 1 cut(s) 343
Hpy99I CGWCG 3 cut(s) 138, 324, 327
HpyAV CCTTC 2 cut(s) 118, 156
HpyCH4V TGCA 2 cut(s) 33, 436
HpyF10VI GCNNNNNNNGC 4 cut(s) 39, 77, 360, 419
HpyF3I CTNAG 2 cut(s) 302, 429
Hsp92II CATG 1 cut(s) 153
HspAI GCGC 4 cut(s) 46, 115, 220, 459
Kzo9I GATC 2 cut(s) 4, 166
LmnI GCTCC 1 cut(s) 410
Lsp1109I GCAGC 1 cut(s) 68
LweI GCATC 3 cut(s) 42, 96, 423
MalI GATC 2 cut(s) 6, 168
MboI GATC 2 cut(s) 4, 166
MboII GAAGA 3 cut(s) 283, 344, 380
MhlI GDGCHC 1 cut(s) 415
MluCI AATT 1 cut(s) 8
MnlI CCTC 4 cut(s) 48, 251, 311, 320
MseI TTAA 2 cut(s) 290, 380
MspI CCGG 2 cut(s) 84, 349
Mva1269I GAATGC 3 cut(s) 117, 222, 461
MvnI CGCG 4 cut(s) 42, 111, 160, 366
MwoI GCNNNNNNNGC 4 cut(s) 39, 77, 360, 419
NdeII GATC 2 cut(s) 4, 166
NlaIII CATG 1 cut(s) 153
NlaIV GGNNCC 1 cut(s) 201
NruI TCGCGA 3 cut(s) 42, 111, 160
PctI GAATGC 3 cut(s) 117, 222, 461
PfeI GAWTC 1 cut(s) 274
PkrI GCNGC 2 cut(s) 58, 365
PshBI ATTAAT 1 cut(s) 380
Psp124BI GAGCTC 1 cut(s) 415
PspN4I GGNNCC 1 cut(s) 201
PspPI GGNCC 1 cut(s) 425
RruI TCGCGA 3 cut(s) 42, 111, 160
SacI GAGCTC 1 cut(s) 415
SaqAI TTAA 2 cut(s) 290, 380
SatI GCNGC 2 cut(s) 57, 364
Sau3AI GATC 2 cut(s) 4, 166
Sau96I GGNCC 1 cut(s) 425
SduI GDGCHC 1 cut(s) 415
SetI ASST 9 cut(s) 129, 148, 175, 205, 243, 415, 424, 430, 444
SfaNI GCATC 3 cut(s) 42, 96, 423
SfcI CTRYAG 1 cut(s) 258
SinI GGWCC 1 cut(s) 425
Sse9I AATT 1 cut(s) 8
SsiI CCGC 1 cut(s) 364
SstI GAGCTC 1 cut(s) 415
TaqI TCGA 3 cut(s) 73, 129, 387
TasI AATT 1 cut(s) 8
TauI GCSGC 1 cut(s) 366
TfiI GAWTC 1 cut(s) 274
Tru1I TTAA 2 cut(s) 290, 380
Tru9I TTAA 2 cut(s) 290, 380
TseI GCWGC 1 cut(s) 56
TspDTI ATGAA 2 cut(s) 78, 138
TspGWI ACGGA 2 cut(s) 216, 455
VpaK11BI GGWCC 1 cut(s) 425
VspI ATTAAT 1 cut(s) 380
XmiI GTMKAC 1 cut(s) 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.