Rmu_sc0014811.1_g000009

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0014811.1
OG0000160
Physical Location & Seq
Reverse (-)
26241 .. 26573
333 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0014811.1_g000009.1.cds

Sequence Viewer

Length: 333 bp
atggagcttctggatcaatttgatgacacggatttggaatacatccctcgcgagcgcaatttcgcggccaatgaacttgctcaactgtctacatgcattacattgaagtatggagtttgcgagcgcatcctgaaagtcaagcgccgcacactgcctttatggctcgcgcagcctgacccgcctgatgatccagtcgtcgcggtcctagagcttattgacatcgattggcgcattccattgatcgattacctcaaacaaccagatcttacaatagataagaagattcgctttcttgccttaaattacttcctcaggggtgacgagcttcgatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

110

Amino Acids

12.97

Weight (kDa)

4.7

Isoelectric Point (pI)

26.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000160)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11612 FvH4_2g25851 FvH4_3g22802 FvH4_3g22805 FvH4_3g31361 FvH4_3g31382 FvH4_4g05272 FvH4_4g05273 FvH4_4g14567 FvH4_4g15161 FvH4_5g22540 FvH4_6g13113 FvH4_6g31923 FvH4_6g31924 FvH4_6g33651 FvH4_6g45122 FvH4_7g03662
pyrus_communis pycom01g04240 pycom01g24010 pycom02g18210 pycom02g19420 pycom05g06510 pycom09g15750 pycom09g18940 pycom12g02580 pycom12g03100 pycom12g08310 pycom13g22710 pycom13g28060 pycom16g18340 pycom16g18350 pycom16g24880 pycom16g26240 pycom461g00260 pycom520g00980 pycom520g01320
rosa_chinensis RchiOBHm_Chr1g0320731 RchiOBHm_Chr2g0102771 RchiOBHm_Chr3g0462151 RchiOBHm_Chr5g0038141 RchiOBHm_Chr5g0069371 RchiOBHm_Chr7g0239101
rosa_multiflora Rmu_co8038252.1_g000001 Rmu_co8138412.1_g000001 Rmu_co8331087.1_g000001 Rmu_co8479311.1_g000001 Rmu_sc0000112.1_g000018 Rmu_sc0000346.1_g000012 Rmu_sc0002102.1_g000002 Rmu_sc0003505.1_g000013 Rmu_sc0004249.1_g000007 Rmu_sc0004448.1_g000010 Rmu_sc0004594.1_g000011 Rmu_sc0004915.1_g000010 Rmu_sc0008019.1_g000019 Rmu_sc0008303.1_g000001 Rmu_sc0008355.1_g000005 Rmu_sc0009253.1_g000018 Rmu_sc0010211.1_g000002 Rmu_sc0010252.1_g000009 Rmu_sc0011534.1_g000008 Rmu_sc0014811.1_g000009 Rmu_sc0019475.1_g000001 Rmu_sc0024897.1_g000001 Rmu_sc0024898.1_g000001 Rmu_sc0031791.1_g000001 Rmu_sc0038715.1_g000001
rosa_roxburghii Rroxscaffold_165G00436940 Rroxscaffold_174G00435270 Rroxscaffold_177G00434330 Rroxscaffold_177G00434340 Rroxscaffold_177G00434350 Rroxscaffold_1G00002160 Rroxscaffold_1G00025260 Rroxscaffold_1G00042950 Rroxscaffold_1G00068010 Rroxscaffold_2G00107530 Rroxscaffold_3G00221190 Rroxscaffold_3G00221520 Rroxscaffold_3G00223200 Rroxscaffold_4G00322230 Rroxscaffold_4G00331810 Rroxscaffold_5G00385150 Rroxscaffold_5G00387510 Rroxscaffold_6G00410520 Rroxscaffold_6G00423360 Rroxscaffold_6G00423370 Rroxscaffold_6G00429210 Rroxscaffold_7G00158300 Rroxscaffold_7G00163480 Rroxscaffold_7G00171410 Rroxscaffold_7G00178940 Rroxscaffold_7G00199480 Rroxscaffold_7G00205630 Rroxscaffold_7G00207440
rosa_rugosa Rorug01G0056400 Rorug04G0063900 Rorug05G0251400 Rorug07G0221900
rosa_samantha Rh1DG169400 Rh2AG292900 Rh2DG519200 Rh4DG260600 Rh5AG042600 Rh6BG117500
rosa_wichuraiana Rw0G001900 Rw0G005150 Rw0G006380 Rw0G015140 Rw0G016320 Rw0G019440 Rw0G019840 Rw0G023740 Rw1G001590 Rw1G002180 Rw1G003560 Rw1G004280 Rw1G006110 Rw1G006680 Rw1G007920 Rw1G008480 Rw1G009120 Rw1G010310 Rw1G014900 Rw1G019650 Rw1G022070 Rw1G022170 Rw1G041570 Rw2G002740 Rw2G005760 Rw2G032370 Rw2G046770 Rw2G050600 Rw2G051420 Rw3G015930 Rw3G016280 Rw3G019580 Rw3G028420 Rw4G003430 Rw4G005350 Rw4G007530 Rw4G008150 Rw4G009580 Rw4G010250 Rw4G015800 Rw4G017000 Rw4G017910 Rw4G018510 Rw4G019700 Rw4G031010 Rw5G012650 Rw5G020140 Rw5G022060 Rw5G034420 Rw5G035560 Rw5G043010 Rw5G046750 Rw5G047340 Rw5G049500 Rw6G001390 Rw6G002210 Rw6G004530 Rw6G004770 Rw6G005100 Rw6G005890 Rw6G011860 Rw6G014680 Rw6G019480 Rw6G028970 Rw6G033800 Rw7G013050 Rw7G014800 Rw7G025760 Rw7G025850 Rw7G026730 Rw7G026870 Rw7G036330 Rw7G036430 Rw7G039320 Rw7G039510 Rw7G039560 Rw7G041370 Rw7G042050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 89
AccII CGCG 4 cut(s) 51, 65, 167, 200
AciI CCGC 4 cut(s) 65, 145, 179, 200
AclWI GGATC 2 cut(s) 21, 182
AcoI YGGCCR 1 cut(s) 66
AgsI TTSAA 1 cut(s) 106
AluBI AGCT 3 cut(s) 7, 211, 325
AluI AGCT 3 cut(s) 7, 211, 325
AlwI GGATC 2 cut(s) 21, 182
AoxI GGCC 1 cut(s) 66
ApeKI GCWGC 1 cut(s) 169
AspLEI GCGC 5 cut(s) 57, 126, 144, 169, 231
AspS9I GGNCC 1 cut(s) 202
AsuHPI GGTGA 1 cut(s) 329
AvaII GGWCC 1 cut(s) 202
AxyI CCTNAGG 1 cut(s) 311
BbvI GCAGC 1 cut(s) 181
BfaI CTAG 1 cut(s) 206
BfoI RGCGCY 1 cut(s) 145
BglI GCCNNNNNGGC 1 cut(s) 160
BglII AGATCT 1 cut(s) 262
BisI GCNGC 3 cut(s) 66, 145, 170
BlsI GCNGC 3 cut(s) 67, 146, 171
Bme18I GGWCC 1 cut(s) 202
BmgT120I GGNCC 1 cut(s) 202
BmsI GCATC 1 cut(s) 135
Bsa29I ATCGAT 2 cut(s) 222, 243
Bse1I ACTGG 1 cut(s) 191
Bse21I CCTNAGG 1 cut(s) 311
BseCI ATCGAT 2 cut(s) 222, 243
BseGI GGATG 2 cut(s) 42, 126
BseMII CTCAG 1 cut(s) 325
BseNI ACTGG 1 cut(s) 191
BseXI GCAGC 1 cut(s) 181
Bsh1236I CGCG 4 cut(s) 51, 65, 167, 200
BshFI GGCC 1 cut(s) 68
BshVI ATCGAT 2 cut(s) 222, 243
BsmI GAATGC 1 cut(s) 231
BsnI GGCC 1 cut(s) 68
Bsp143I GATC 4 cut(s) 13, 187, 240, 262
Bsp68I TCGCGA 1 cut(s) 51
BspACI CCGC 4 cut(s) 65, 145, 179, 200
BspANI GGCC 1 cut(s) 68
BspCNI CTCAG 1 cut(s) 324
BspDI ATCGAT 2 cut(s) 222, 243
BspFNI CGCG 4 cut(s) 51, 65, 167, 200
BspPI GGATC 2 cut(s) 21, 182
BsrI ACTGG 1 cut(s) 191
BssMI GATC 4 cut(s) 13, 187, 240, 262
Bst4CI ACNGT 1 cut(s) 87
BstC8I GCNNGC 3 cut(s) 53, 122, 165
BstDEI CTNAG 1 cut(s) 311
BstF5I GGATG 2 cut(s) 42, 126
BstFNI CGCG 4 cut(s) 51, 65, 167, 200
BstH2I RGCGCY 1 cut(s) 145
BstHHI GCGC 5 cut(s) 57, 126, 144, 169, 231
BstKTI GATC 4 cut(s) 16, 190, 243, 265
BstMBI GATC 4 cut(s) 13, 187, 240, 262
BstMWI GCNNNNNNNGC 3 cut(s) 160, 169, 178
BstNSI RCATGY 1 cut(s) 96
BstUI CGCG 4 cut(s) 51, 65, 167, 200
BstV1I GCAGC 1 cut(s) 181
BstX2I RGATCY 1 cut(s) 262
BstYI RGATCY 1 cut(s) 262
Bsu15I ATCGAT 2 cut(s) 222, 243
Bsu36I CCTNAGG 1 cut(s) 311
BsuRI GGCC 1 cut(s) 68
BsuTUI ATCGAT 2 cut(s) 222, 243
BtsCI GGATG 2 cut(s) 42, 126
BtsI GCAGTG 1 cut(s) 149
BtsIMutI CAGTG 1 cut(s) 149
BtuMI TCGCGA 1 cut(s) 51
Cac8I GCNNGC 3 cut(s) 53, 122, 165
CfoI GCGC 5 cut(s) 57, 126, 144, 169, 231
Cfr13I GGNCC 1 cut(s) 202
ClaI ATCGAT 2 cut(s) 222, 243
CviAII CATG 1 cut(s) 93
CviJI RGCY 6 cut(s) 7, 68, 163, 172, 211, 325
CviKI_1 RGCY 6 cut(s) 7, 68, 163, 172, 211, 325
DdeI CTNAG 1 cut(s) 311
DpnI GATC 4 cut(s) 15, 189, 242, 264
DpnII GATC 4 cut(s) 13, 187, 240, 262
EaeI YGGCCR 1 cut(s) 66
Eco47I GGWCC 1 cut(s) 202
Eco81I CCTNAGG 1 cut(s) 311
EcoT22I ATGCAT 1 cut(s) 98
FaeI CATG 1 cut(s) 96
FaiI YATR 3 cut(s) 94, 111, 160
FalI AAGNNNNNCTT 2 cut(s) 272, 304
FatI CATG 1 cut(s) 92
FauI CCCGC 1 cut(s) 186
FblI GTMKAC 1 cut(s) 89
Fnu4HI GCNGC 3 cut(s) 66, 145, 170
FokI GGATG 2 cut(s) 29, 113
Fsp4HI GCNGC 3 cut(s) 66, 145, 170
FspBI CTAG 1 cut(s) 206
GlaI GCGC 5 cut(s) 56, 125, 143, 168, 230
GluI GCNGC 3 cut(s) 66, 145, 170
HaeII RGCGCY 1 cut(s) 145
HaeIII GGCC 1 cut(s) 68
HhaI GCGC 5 cut(s) 57, 126, 144, 169, 231
Hin1II CATG 1 cut(s) 96
Hin6I GCGC 5 cut(s) 55, 124, 142, 167, 229
HinP1I GCGC 5 cut(s) 55, 124, 142, 167, 229
HinfI GANTC 1 cut(s) 283
HphI GGTGA 1 cut(s) 329
Hpy166II GTNNAC 1 cut(s) 90
Hpy188III TCNNGA 3 cut(s) 11, 50, 130
Hpy8I GTNNAC 1 cut(s) 90
Hpy99I CGWCG 1 cut(s) 200
HpyCH4III ACNGT 1 cut(s) 87
HpyCH4V TGCA 1 cut(s) 96
HpyF10VI GCNNNNNNNGC 3 cut(s) 160, 169, 178
HpyF3I CTNAG 1 cut(s) 311
Hsp92II CATG 1 cut(s) 96
HspAI GCGC 5 cut(s) 55, 124, 142, 167, 229
Kzo9I GATC 4 cut(s) 13, 187, 240, 262
LmnI GCTCC 1 cut(s) 4
LpnPI CCDG 6 cut(s) 143, 186, 195, 204, 273, 298
Lsp1109I GCAGC 1 cut(s) 181
LweI GCATC 1 cut(s) 135
MaeI CTAG 1 cut(s) 206
MaeIII GTNAC 1 cut(s) 317
MalI GATC 4 cut(s) 15, 189, 242, 264
MboI GATC 4 cut(s) 13, 187, 240, 262
MboII GAAGA 1 cut(s) 292
MflI RGATCY 1 cut(s) 262
MluCI AATT 3 cut(s) 17, 58, 301
MnlI CCTC 3 cut(s) 57, 260, 320
Mph1103I ATGCAT 1 cut(s) 98
MseI TTAA 1 cut(s) 299
Mva1269I GAATGC 1 cut(s) 231
MvnI CGCG 4 cut(s) 51, 65, 167, 200
MwoI GCNNNNNNNGC 3 cut(s) 160, 169, 178
NdeII GATC 4 cut(s) 13, 187, 240, 262
NlaIII CATG 1 cut(s) 96
NmuCI GTSAC 1 cut(s) 317
NruI TCGCGA 1 cut(s) 51
NsiI ATGCAT 1 cut(s) 98
NspI RCATGY 1 cut(s) 96
PctI GAATGC 1 cut(s) 231
PfeI GAWTC 1 cut(s) 283
PkrI GCNGC 3 cut(s) 67, 146, 171
PspPI GGNCC 1 cut(s) 202
PsuI RGATCY 1 cut(s) 262
RruI TCGCGA 1 cut(s) 51
SaqAI TTAA 1 cut(s) 299
SatI GCNGC 3 cut(s) 66, 145, 170
Sau3AI GATC 4 cut(s) 13, 187, 240, 262
Sau96I GGNCC 1 cut(s) 202
SetI ASST 4 cut(s) 9, 213, 252, 327
SfaNI GCATC 1 cut(s) 135
SinI GGWCC 1 cut(s) 202
Sse9I AATT 3 cut(s) 17, 58, 301
SsiI CCGC 4 cut(s) 65, 145, 179, 200
SspMI CTAG 1 cut(s) 206
TaaI ACNGT 1 cut(s) 87
TaqI TCGA 3 cut(s) 222, 243, 328
TasI AATT 3 cut(s) 17, 58, 301
TauI GCSGC 2 cut(s) 68, 147
TfiI GAWTC 1 cut(s) 283
Tru1I TTAA 1 cut(s) 299
Tru9I TTAA 1 cut(s) 299
TscAI CASTG 1 cut(s) 156
TseFI GTSAC 1 cut(s) 317
TseI GCWGC 1 cut(s) 169
Tsp45I GTSAC 1 cut(s) 317
TspDTI ATGAA 1 cut(s) 87
TspGWI ACGGA 1 cut(s) 44
TspRI CASTG 1 cut(s) 156
VpaK11BI GGWCC 1 cut(s) 202
XceI RCATGY 1 cut(s) 96
XmiI GTMKAC 1 cut(s) 89
XspI CTAG 1 cut(s) 206
Zsp2I ATGCAT 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.