Rmu_sc0004249.1_g000007

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004249.1
OG0000160
Physical Location & Seq
Reverse (-)
23853 .. 28906
5054 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004249.1_g000007.1.cds

Sequence Viewer

Length: 552 bp
atgaggcgatggttcgtcgtcgtagattctgagggttctacagtgaccgagtttttgttactagtgacagcagcttttgtggtcgccggagacctcgccgaagttgacaagagaccggctggagttggcaggaggtttaccggaaacctaccgaaattggccgggggtcggccagaggcgagccaaagttggacgaatgtcgatcggagacttgccggagacctcaccaaaaaggggagagagaatgactccaatgttgtctctatttacgtgatcgatgttgatgactggaggtacccattgattgattgcctcaagcgaaataagctttctgatgacccaaagcaacgctcagacataagacgaagagtaccacgcttcttcgactacaaggagactctttatcgacgatcattcgatggattgcttcttagatgtctggggaaagaggaagttgctaaggctatggaggaagctcattcaagagtatgcagagctcaccagtcaggtcctaagctccactttcaagtgaagatgatgggttactattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

183

Amino Acids

21.0

Weight (kDa)

9.54

Isoelectric Point (pI)

56.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000160)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11612 FvH4_2g25851 FvH4_3g22802 FvH4_3g22805 FvH4_3g31361 FvH4_3g31382 FvH4_4g05272 FvH4_4g05273 FvH4_4g14567 FvH4_4g15161 FvH4_5g22540 FvH4_6g13113 FvH4_6g31923 FvH4_6g31924 FvH4_6g33651 FvH4_6g45122 FvH4_7g03662
pyrus_communis pycom01g04240 pycom01g24010 pycom02g18210 pycom02g19420 pycom05g06510 pycom09g15750 pycom09g18940 pycom12g02580 pycom12g03100 pycom12g08310 pycom13g22710 pycom13g28060 pycom16g18340 pycom16g18350 pycom16g24880 pycom16g26240 pycom461g00260 pycom520g00980 pycom520g01320
rosa_chinensis RchiOBHm_Chr1g0320731 RchiOBHm_Chr2g0102771 RchiOBHm_Chr3g0462151 RchiOBHm_Chr5g0038141 RchiOBHm_Chr5g0069371 RchiOBHm_Chr7g0239101
rosa_multiflora Rmu_co8038252.1_g000001 Rmu_co8138412.1_g000001 Rmu_co8331087.1_g000001 Rmu_co8479311.1_g000001 Rmu_sc0000112.1_g000018 Rmu_sc0000346.1_g000012 Rmu_sc0002102.1_g000002 Rmu_sc0003505.1_g000013 Rmu_sc0004249.1_g000007 Rmu_sc0004448.1_g000010 Rmu_sc0004594.1_g000011 Rmu_sc0004915.1_g000010 Rmu_sc0008019.1_g000019 Rmu_sc0008303.1_g000001 Rmu_sc0008355.1_g000005 Rmu_sc0009253.1_g000018 Rmu_sc0010211.1_g000002 Rmu_sc0010252.1_g000009 Rmu_sc0011534.1_g000008 Rmu_sc0014811.1_g000009 Rmu_sc0019475.1_g000001 Rmu_sc0024897.1_g000001 Rmu_sc0024898.1_g000001 Rmu_sc0031791.1_g000001 Rmu_sc0038715.1_g000001
rosa_roxburghii Rroxscaffold_165G00436940 Rroxscaffold_174G00435270 Rroxscaffold_177G00434330 Rroxscaffold_177G00434340 Rroxscaffold_177G00434350 Rroxscaffold_1G00002160 Rroxscaffold_1G00025260 Rroxscaffold_1G00042950 Rroxscaffold_1G00068010 Rroxscaffold_2G00107530 Rroxscaffold_3G00221190 Rroxscaffold_3G00221520 Rroxscaffold_3G00223200 Rroxscaffold_4G00322230 Rroxscaffold_4G00331810 Rroxscaffold_5G00385150 Rroxscaffold_5G00387510 Rroxscaffold_6G00410520 Rroxscaffold_6G00423360 Rroxscaffold_6G00423370 Rroxscaffold_6G00429210 Rroxscaffold_7G00158300 Rroxscaffold_7G00163480 Rroxscaffold_7G00171410 Rroxscaffold_7G00178940 Rroxscaffold_7G00199480 Rroxscaffold_7G00205630 Rroxscaffold_7G00207440
rosa_rugosa Rorug01G0056400 Rorug04G0063900 Rorug05G0251400 Rorug07G0221900
rosa_samantha Rh1DG169400 Rh2AG292900 Rh2DG519200 Rh4DG260600 Rh5AG042600 Rh6BG117500
rosa_wichuraiana Rw0G001900 Rw0G005150 Rw0G006380 Rw0G015140 Rw0G016320 Rw0G019440 Rw0G019840 Rw0G023740 Rw1G001590 Rw1G002180 Rw1G003560 Rw1G004280 Rw1G006110 Rw1G006680 Rw1G007920 Rw1G008480 Rw1G009120 Rw1G010310 Rw1G014900 Rw1G019650 Rw1G022070 Rw1G022170 Rw1G041570 Rw2G002740 Rw2G005760 Rw2G032370 Rw2G046770 Rw2G050600 Rw2G051420 Rw3G015930 Rw3G016280 Rw3G019580 Rw3G028420 Rw4G003430 Rw4G005350 Rw4G007530 Rw4G008150 Rw4G009580 Rw4G010250 Rw4G015800 Rw4G017000 Rw4G017910 Rw4G018510 Rw4G019700 Rw4G031010 Rw5G012650 Rw5G020140 Rw5G022060 Rw5G034420 Rw5G035560 Rw5G043010 Rw5G046750 Rw5G047340 Rw5G049500 Rw6G001390 Rw6G002210 Rw6G004530 Rw6G004770 Rw6G005100 Rw6G005890 Rw6G011860 Rw6G014680 Rw6G019480 Rw6G028970 Rw6G033800 Rw7G013050 Rw7G014800 Rw7G025760 Rw7G025850 Rw7G026730 Rw7G026870 Rw7G036330 Rw7G036430 Rw7G039320 Rw7G039510 Rw7G039560 Rw7G041370 Rw7G042050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 294
AccB1I GGYRCC 1 cut(s) 294
AcoI YGGCCR 2 cut(s) 159, 170
AfaI GTAC 2 cut(s) 296, 372
AfiI CCNNNNNNNGG 2 cut(s) 168, 234
AgsI TTSAA 2 cut(s) 483, 527
AhlI ACTAGT 1 cut(s) 61
AluBI AGCT 5 cut(s) 74, 328, 476, 497, 517
AluI AGCT 5 cut(s) 74, 328, 476, 497, 517
Alw21I GWGCWC 1 cut(s) 499
Alw26I GTCTC 6 cut(s) 84, 106, 202, 213, 265, 389
AoxI GGCC 2 cut(s) 159, 170
ApeKI GCWGC 1 cut(s) 71
ArsI GACNNNNNNTTYG 2 cut(s) 37, 69
Asp718I GGTACC 1 cut(s) 294
AspS9I GGNCC 1 cut(s) 509
AsuC2I CCSGG 1 cut(s) 163
AsuHPI GGTGA 2 cut(s) 217, 491
AvaII GGWCC 1 cut(s) 509
BanI GGYRCC 1 cut(s) 294
BanII GRGCYC 1 cut(s) 499
Bbv12I GWGCWC 1 cut(s) 499
BbvI GCAGC 1 cut(s) 83
BccI CCATC 3 cut(s) 3, 413, 532
BcnI CCSGG 1 cut(s) 163
BcoDI GTCTC 6 cut(s) 84, 106, 202, 213, 265, 389
BcuI ACTAGT 1 cut(s) 61
BfaI CTAG 1 cut(s) 62
BfmI CTRYAG 1 cut(s) 39
BisI GCNGC 1 cut(s) 72
BlsI GCNGC 1 cut(s) 73
Bme1390I CCNGG 1 cut(s) 163
Bme18I GGWCC 1 cut(s) 509
BmgT120I GGNCC 1 cut(s) 509
BmiI GGNNCC 1 cut(s) 296
BmrFI CCNGG 1 cut(s) 163
BoxI GACNNNNGTC 1 cut(s) 197
BplI GAGNNNNNCTC 2 cut(s) 233, 265
BpmI CTGGAG 2 cut(s) 141, 310
Bpu10I CCTNAGC 2 cut(s) 459, 513
BpuEI CTTGAG 1 cut(s) 299
BpuMI CCSGG 1 cut(s) 163
Bsa29I ATCGAT 1 cut(s) 276
BsaAI YACGTR 1 cut(s) 271
BsaI GGTCTC 3 cut(s) 84, 106, 213
BsaJI CCNNGG 1 cut(s) 162
BsaWI WCCGGW 1 cut(s) 140
Bsc4I CCNNNNNNNGG 2 cut(s) 168, 234
Bse118I RCCGGY 1 cut(s) 115
Bse1I ACTGG 2 cut(s) 293, 502
BseCI ATCGAT 1 cut(s) 276
BseDI CCNNGG 1 cut(s) 162
BseLI CCNNNNNNNGG 2 cut(s) 168, 234
BseMII CTCAG 2 cut(s) 21, 366
BseNI ACTGG 2 cut(s) 293, 502
BseXI GCAGC 1 cut(s) 83
Bsh1285I CGRYCG 1 cut(s) 205
BshFI GGCC 2 cut(s) 161, 172
BshNI GGYRCC 1 cut(s) 294
BshVI ATCGAT 1 cut(s) 276
BsiEI CGRYCG 1 cut(s) 205
BsiHKAI GWGCWC 1 cut(s) 499
BsiSI CCGG 5 cut(s) 87, 116, 141, 162, 216
BslI CCNNNNNNNGG 2 cut(s) 168, 234
BsmAI GTCTC 6 cut(s) 84, 106, 202, 213, 265, 389
BsnI GGCC 2 cut(s) 161, 172
Bso31I GGTCTC 3 cut(s) 84, 106, 213
Bsp1286I GDGCHC 1 cut(s) 499
Bsp143I GATC 3 cut(s) 202, 273, 410
BspANI GGCC 2 cut(s) 161, 172
BspCNI CTCAG 2 cut(s) 22, 365
BspDI ATCGAT 1 cut(s) 276
BspLI GGNNCC 1 cut(s) 296
BspT107I GGYRCC 1 cut(s) 294
BspTNI GGTCTC 3 cut(s) 84, 106, 213
BsrFI RCCGGY 1 cut(s) 115
BsrI ACTGG 2 cut(s) 293, 502
BssAI RCCGGY 1 cut(s) 115
BssECI CCNNGG 1 cut(s) 162
BssMI GATC 3 cut(s) 202, 273, 410
Bst4CI ACNGT 1 cut(s) 43
Bst6I CTCTTC 1 cut(s) 361
BstBAI YACGTR 1 cut(s) 271
BstC8I GCNNGC 1 cut(s) 181
BstDEI CTNAG 5 cut(s) 30, 352, 431, 459, 513
BstKTI GATC 3 cut(s) 205, 276, 413
BstMAI GTCTC 6 cut(s) 84, 106, 202, 213, 265, 389
BstMBI GATC 3 cut(s) 202, 273, 410
BstMCI CGRYCG 1 cut(s) 205
BstMWI GCNNNNNNNGC 1 cut(s) 325
BstPAI GACNNNNGTC 1 cut(s) 197
BstSCI CCNGG 1 cut(s) 161
BstSFI CTRYAG 1 cut(s) 39
BstV1I GCAGC 1 cut(s) 83
Bsu15I ATCGAT 1 cut(s) 276
BsuRI GGCC 2 cut(s) 161, 172
BsuTUI ATCGAT 1 cut(s) 276
BtgZI GCGATG 1 cut(s) 22
BtsIMutI CAGTG 1 cut(s) 48
Cac8I GCNNGC 1 cut(s) 181
Cfr10I RCCGGY 1 cut(s) 115
Cfr13I GGNCC 1 cut(s) 509
ClaI ATCGAT 1 cut(s) 276
Csp6I GTAC 2 cut(s) 295, 371
CviQI GTAC 2 cut(s) 295, 371
DdeI CTNAG 5 cut(s) 30, 352, 431, 459, 513
DpnI GATC 3 cut(s) 204, 275, 412
DpnII GATC 3 cut(s) 202, 273, 410
EaeI YGGCCR 2 cut(s) 159, 170
Eam1104I CTCTTC 1 cut(s) 361
EarI CTCTTC 1 cut(s) 361
Ecl136II GAGCTC 1 cut(s) 497
Eco24I GRGCYC 1 cut(s) 499
Eco31I GGTCTC 3 cut(s) 84, 106, 213
Eco47I GGWCC 1 cut(s) 509
Eco53kI GAGCTC 1 cut(s) 497
EcoICRI GAGCTC 1 cut(s) 497
EcoO109I RGGNCCY 1 cut(s) 509
EcoT38I GRGCYC 1 cut(s) 499
FaiI YATR 3 cut(s) 359, 467, 490
FalI AAGNNNNNCTT 2 cut(s) 506, 538
Fnu4HI GCNGC 1 cut(s) 72
FriOI GRGCYC 1 cut(s) 499
Fsp4HI GCNGC 1 cut(s) 72
FspBI CTAG 1 cut(s) 62
GluI GCNGC 1 cut(s) 72
GsuI CTGGAG 2 cut(s) 141, 310
HaeIII GGCC 2 cut(s) 161, 172
HapII CCGG 5 cut(s) 87, 116, 141, 162, 216
HincII GTYRAC 1 cut(s) 106
HindII GTYRAC 1 cut(s) 106
HindIII AAGCTT 1 cut(s) 326
HinfI GANTC 3 cut(s) 26, 248, 397
HpaII CCGG 5 cut(s) 87, 116, 141, 162, 216
HphI GGTGA 2 cut(s) 217, 491
Hpy166II GTNNAC 2 cut(s) 106, 138
Hpy188I TCNGA 4 cut(s) 31, 207, 334, 355
Hpy188III TCNNGA 1 cut(s) 483
Hpy8I GTNNAC 2 cut(s) 106, 138
Hpy99I CGWCG 3 cut(s) 20, 23, 411
HpyCH4III ACNGT 1 cut(s) 43
HpyCH4IV ACGT 1 cut(s) 270
HpyCH4V TGCA 1 cut(s) 492
HpyF10VI GCNNNNNNNGC 1 cut(s) 325
HpyF3I CTNAG 5 cut(s) 30, 352, 431, 459, 513
HpySE526I ACGT 1 cut(s) 270
KpnI GGTACC 1 cut(s) 298
Kzo9I GATC 3 cut(s) 202, 273, 410
LmnI GCTCC 1 cut(s) 522
Lsp1109I GCAGC 1 cut(s) 83
MaeI CTAG 1 cut(s) 62
MaeII ACGT 1 cut(s) 270
MaeIII GTNAC 4 cut(s) 43, 57, 64, 542
MalI GATC 3 cut(s) 204, 275, 412
MboI GATC 3 cut(s) 202, 273, 410
MboII GAAGA 3 cut(s) 373, 378, 544
MhlI GDGCHC 1 cut(s) 499
MluCI AATT 1 cut(s) 155
MlyI GAGTC 2 cut(s) 242, 391
MmeI TCCRAC 1 cut(s) 170
MnlI CCTC 9 cut(s) 25, 104, 126, 169, 233, 285, 323, 442, 463
MspI CCGG 5 cut(s) 87, 116, 141, 162, 216
MspR9I CCNGG 1 cut(s) 163
MwoI GCNNNNNNNGC 1 cut(s) 325
NciI CCSGG 1 cut(s) 163
NdeII GATC 3 cut(s) 202, 273, 410
NlaIV GGNNCC 1 cut(s) 296
NmuCI GTSAC 2 cut(s) 43, 64
PfeI GAWTC 1 cut(s) 26
PkrI GCNGC 1 cut(s) 73
Ple19I CGATCG 1 cut(s) 205
PleI GAGTC 2 cut(s) 242, 391
PpsI GAGTC 2 cut(s) 242, 391
Ppu21I YACGTR 1 cut(s) 271
PpuMI RGGWCCY 1 cut(s) 509
PshAI GACNNNNGTC 1 cut(s) 197
Psp124BI GAGCTC 1 cut(s) 499
Psp5II RGGWCCY 1 cut(s) 509
PspN4I GGNNCC 1 cut(s) 296
PspPI GGNCC 1 cut(s) 509
PspPPI RGGWCCY 1 cut(s) 509
PvuI CGATCG 1 cut(s) 205
RsaI GTAC 2 cut(s) 296, 372
RsaNI GTAC 2 cut(s) 295, 371
SacI GAGCTC 1 cut(s) 499
SatI GCNGC 1 cut(s) 72
Sau3AI GATC 3 cut(s) 202, 273, 410
Sau96I GGNCC 1 cut(s) 509
SchI GAGTC 2 cut(s) 242, 391
ScrFI CCNGG 1 cut(s) 163
SduI GDGCHC 1 cut(s) 499
SfcI CTRYAG 1 cut(s) 39
SinI GGWCC 1 cut(s) 509
SmlI CTYRAG 1 cut(s) 314
SmoI CTYRAG 1 cut(s) 314
SpeI ACTAGT 1 cut(s) 61
Sse9I AATT 1 cut(s) 155
SspMI CTAG 1 cut(s) 62
SstI GAGCTC 1 cut(s) 499
StyD4I CCNGG 1 cut(s) 161
TaaI ACNGT 1 cut(s) 43
TaiI ACGT 1 cut(s) 273
TaqI TCGA 5 cut(s) 201, 276, 384, 406, 417
TaqII GACCGA 1 cut(s) 62
TasI AATT 1 cut(s) 155
TfiI GAWTC 1 cut(s) 26
TscAI CASTG 1 cut(s) 48
TseFI GTSAC 2 cut(s) 43, 64
TseI GCWGC 1 cut(s) 71
Tsp45I GTSAC 2 cut(s) 43, 64
TspRI CASTG 1 cut(s) 48
VpaK11BI GGWCC 1 cut(s) 509
XspI CTAG 1 cut(s) 62
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.