Rmu_sc0004594.1_g000011

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004594.1
OG0000160
Physical Location & Seq
Forward (+)
27250 .. 27519
270 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004594.1_g000011.1.cds

Sequence Viewer

Length: 270 bp
atgattaatcagctttgtgagaagttcatgtgcataagttacttgctcgcaccatatttgagtcgcgctcttgagcttctggtccaatttgatgacgtagacttagagcatattcctcacgagcgtaactttgcagccaatgaactcgctcagctggctacaggcattaccttaaaatatggggttcgcgagcgaattttgaaggttgagcgacctgacccaccagaagaaccaacagtcgcggttttagatcctattgacgtggattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

89

Amino Acids

10.16

Weight (kDa)

4.56

Isoelectric Point (pI)

21.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000160)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11612 FvH4_2g25851 FvH4_3g22802 FvH4_3g22805 FvH4_3g31361 FvH4_3g31382 FvH4_4g05272 FvH4_4g05273 FvH4_4g14567 FvH4_4g15161 FvH4_5g22540 FvH4_6g13113 FvH4_6g31923 FvH4_6g31924 FvH4_6g33651 FvH4_6g45122 FvH4_7g03662
pyrus_communis pycom01g04240 pycom01g24010 pycom02g18210 pycom02g19420 pycom05g06510 pycom09g15750 pycom09g18940 pycom12g02580 pycom12g03100 pycom12g08310 pycom13g22710 pycom13g28060 pycom16g18340 pycom16g18350 pycom16g24880 pycom16g26240 pycom461g00260 pycom520g00980 pycom520g01320
rosa_chinensis RchiOBHm_Chr1g0320731 RchiOBHm_Chr2g0102771 RchiOBHm_Chr3g0462151 RchiOBHm_Chr5g0038141 RchiOBHm_Chr5g0069371 RchiOBHm_Chr7g0239101
rosa_multiflora Rmu_co8038252.1_g000001 Rmu_co8138412.1_g000001 Rmu_co8331087.1_g000001 Rmu_co8479311.1_g000001 Rmu_sc0000112.1_g000018 Rmu_sc0000346.1_g000012 Rmu_sc0002102.1_g000002 Rmu_sc0003505.1_g000013 Rmu_sc0004249.1_g000007 Rmu_sc0004448.1_g000010 Rmu_sc0004594.1_g000011 Rmu_sc0004915.1_g000010 Rmu_sc0008019.1_g000019 Rmu_sc0008303.1_g000001 Rmu_sc0008355.1_g000005 Rmu_sc0009253.1_g000018 Rmu_sc0010211.1_g000002 Rmu_sc0010252.1_g000009 Rmu_sc0011534.1_g000008 Rmu_sc0014811.1_g000009 Rmu_sc0019475.1_g000001 Rmu_sc0024897.1_g000001 Rmu_sc0024898.1_g000001 Rmu_sc0031791.1_g000001 Rmu_sc0038715.1_g000001
rosa_roxburghii Rroxscaffold_165G00436940 Rroxscaffold_174G00435270 Rroxscaffold_177G00434330 Rroxscaffold_177G00434340 Rroxscaffold_177G00434350 Rroxscaffold_1G00002160 Rroxscaffold_1G00025260 Rroxscaffold_1G00042950 Rroxscaffold_1G00068010 Rroxscaffold_2G00107530 Rroxscaffold_3G00221190 Rroxscaffold_3G00221520 Rroxscaffold_3G00223200 Rroxscaffold_4G00322230 Rroxscaffold_4G00331810 Rroxscaffold_5G00385150 Rroxscaffold_5G00387510 Rroxscaffold_6G00410520 Rroxscaffold_6G00423360 Rroxscaffold_6G00423370 Rroxscaffold_6G00429210 Rroxscaffold_7G00158300 Rroxscaffold_7G00163480 Rroxscaffold_7G00171410 Rroxscaffold_7G00178940 Rroxscaffold_7G00199480 Rroxscaffold_7G00205630 Rroxscaffold_7G00207440
rosa_rugosa Rorug01G0056400 Rorug04G0063900 Rorug05G0251400 Rorug07G0221900
rosa_samantha Rh1DG169400 Rh2AG292900 Rh2DG519200 Rh4DG260600 Rh5AG042600 Rh6BG117500
rosa_wichuraiana Rw0G001900 Rw0G005150 Rw0G006380 Rw0G015140 Rw0G016320 Rw0G019440 Rw0G019840 Rw0G023740 Rw1G001590 Rw1G002180 Rw1G003560 Rw1G004280 Rw1G006110 Rw1G006680 Rw1G007920 Rw1G008480 Rw1G009120 Rw1G010310 Rw1G014900 Rw1G019650 Rw1G022070 Rw1G022170 Rw1G041570 Rw2G002740 Rw2G005760 Rw2G032370 Rw2G046770 Rw2G050600 Rw2G051420 Rw3G015930 Rw3G016280 Rw3G019580 Rw3G028420 Rw4G003430 Rw4G005350 Rw4G007530 Rw4G008150 Rw4G009580 Rw4G010250 Rw4G015800 Rw4G017000 Rw4G017910 Rw4G018510 Rw4G019700 Rw4G031010 Rw5G012650 Rw5G020140 Rw5G022060 Rw5G034420 Rw5G035560 Rw5G043010 Rw5G046750 Rw5G047340 Rw5G049500 Rw6G001390 Rw6G002210 Rw6G004530 Rw6G004770 Rw6G005100 Rw6G005890 Rw6G011860 Rw6G014680 Rw6G019480 Rw6G028970 Rw6G033800 Rw7G013050 Rw7G014800 Rw7G025760 Rw7G025850 Rw7G026730 Rw7G026870 Rw7G036330 Rw7G036430 Rw7G039320 Rw7G039510 Rw7G039560 Rw7G041370 Rw7G042050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 99
AccII CGCG 3 cut(s) 66, 189, 242
AciI CCGC 1 cut(s) 242
AclWI GGATC 1 cut(s) 245
AcsI RAATTY 1 cut(s) 195
AgsI TTSAA 1 cut(s) 202
AjiI CACGTC 1 cut(s) 262
AluBI AGCT 3 cut(s) 13, 76, 154
AluI AGCT 3 cut(s) 13, 76, 154
AlwI GGATC 1 cut(s) 245
ApeKI GCWGC 1 cut(s) 134
ApoI RAATTY 1 cut(s) 195
AseI ATTAAT 1 cut(s) 6
AspLEI GCGC 1 cut(s) 68
AspS9I GGNCC 1 cut(s) 82
AvaII GGWCC 1 cut(s) 82
BauI CACGAG 1 cut(s) 119
BbvI GCAGC 1 cut(s) 146
BfmI CTRYAG 1 cut(s) 159
BisI GCNGC 1 cut(s) 135
BlpI GCTNAGC 1 cut(s) 150
BlsI GCNGC 1 cut(s) 136
Bme18I GGWCC 1 cut(s) 82
BmgBI CACGTC 1 cut(s) 262
BmgT120I GGNCC 1 cut(s) 82
BplI GAGNNNNNCTC 2 cut(s) 52, 84
Bpu1102I GCTNAGC 1 cut(s) 150
BpuEI CTTGAG 1 cut(s) 92
BseMII CTCAG 1 cut(s) 164
BseXI GCAGC 1 cut(s) 146
Bsh1236I CGCG 3 cut(s) 66, 189, 242
Bsp143I GATC 1 cut(s) 250
Bsp1720I GCTNAGC 1 cut(s) 150
Bsp68I TCGCGA 1 cut(s) 189
BspACI CCGC 1 cut(s) 242
BspCNI CTCAG 1 cut(s) 163
BspFNI CGCG 3 cut(s) 66, 189, 242
BspPI GGATC 1 cut(s) 245
BssMI GATC 1 cut(s) 250
BssSI CACGAG 1 cut(s) 119
Bst2BI CACGAG 1 cut(s) 119
Bst4CI ACNGT 1 cut(s) 238
BstC8I GCNNGC 3 cut(s) 48, 156, 191
BstDEI CTNAG 2 cut(s) 103, 150
BstFNI CGCG 3 cut(s) 66, 189, 242
BstHHI GCGC 1 cut(s) 68
BstKTI GATC 1 cut(s) 253
BstMBI GATC 1 cut(s) 250
BstMWI GCNNNNNNNGC 1 cut(s) 155
BstSFI CTRYAG 1 cut(s) 159
BstUI CGCG 3 cut(s) 66, 189, 242
BstV1I GCAGC 1 cut(s) 146
BstX2I RGATCY 1 cut(s) 250
BstYI RGATCY 1 cut(s) 250
BtrI CACGTC 1 cut(s) 262
BtuMI TCGCGA 1 cut(s) 189
Cac8I GCNNGC 3 cut(s) 48, 156, 191
CfoI GCGC 1 cut(s) 68
Cfr13I GGNCC 1 cut(s) 82
CviAII CATG 1 cut(s) 28
CviJI RGCY 5 cut(s) 13, 76, 137, 154, 158
CviKI_1 RGCY 5 cut(s) 13, 76, 137, 154, 158
DdeI CTNAG 2 cut(s) 103, 150
DpnI GATC 1 cut(s) 252
DpnII GATC 1 cut(s) 250
Eco47I GGWCC 1 cut(s) 82
FaeI CATG 1 cut(s) 31
FaiI YATR 5 cut(s) 29, 35, 55, 111, 180
FatI CATG 1 cut(s) 27
FblI GTMKAC 1 cut(s) 99
Fnu4HI GCNGC 1 cut(s) 135
Fsp4HI GCNGC 1 cut(s) 135
GlaI GCGC 1 cut(s) 67
GluI GCNGC 1 cut(s) 135
HhaI GCGC 1 cut(s) 68
Hin1II CATG 1 cut(s) 31
Hin6I GCGC 1 cut(s) 66
HinP1I GCGC 1 cut(s) 66
HinfI GANTC 1 cut(s) 61
Hpy166II GTNNAC 1 cut(s) 100
Hpy188III TCNNGA 3 cut(s) 71, 119, 188
Hpy8I GTNNAC 1 cut(s) 100
HpyAV CCTTC 1 cut(s) 196
HpyCH4III ACNGT 1 cut(s) 238
HpyCH4IV ACGT 2 cut(s) 96, 261
HpyCH4V TGCA 2 cut(s) 33, 134
HpyF10VI GCNNNNNNNGC 1 cut(s) 155
HpyF3I CTNAG 2 cut(s) 103, 150
HpySE526I ACGT 2 cut(s) 96, 261
Hsp92II CATG 1 cut(s) 31
HspAI GCGC 1 cut(s) 66
Kzo9I GATC 1 cut(s) 250
LpnPI CCDG 5 cut(s) 65, 140, 147, 228, 237
Lsp1109I GCAGC 1 cut(s) 146
MaeII ACGT 2 cut(s) 96, 261
MaeIII GTNAC 2 cut(s) 38, 125
MalI GATC 1 cut(s) 252
MboI GATC 1 cut(s) 250
MboII GAAGA 1 cut(s) 239
MflI RGATCY 1 cut(s) 250
MluCI AATT 2 cut(s) 86, 195
MlyI GAGTC 1 cut(s) 70
MnlI CCTC 1 cut(s) 126
MseI TTAA 2 cut(s) 6, 173
MspA1I CMGCKG 1 cut(s) 154
MvnI CGCG 3 cut(s) 66, 189, 242
MwoI GCNNNNNNNGC 1 cut(s) 155
NdeII GATC 1 cut(s) 250
NlaIII CATG 1 cut(s) 31
NruI TCGCGA 1 cut(s) 189
PkrI GCNGC 1 cut(s) 136
PleI GAGTC 1 cut(s) 69
PpsI GAGTC 1 cut(s) 69
PshBI ATTAAT 1 cut(s) 6
PspPI GGNCC 1 cut(s) 82
PsuI RGATCY 1 cut(s) 250
PvuII CAGCTG 1 cut(s) 154
RruI TCGCGA 1 cut(s) 189
SaqAI TTAA 2 cut(s) 6, 173
SatI GCNGC 1 cut(s) 135
Sau3AI GATC 1 cut(s) 250
Sau96I GGNCC 1 cut(s) 82
SchI GAGTC 1 cut(s) 70
SetI ASST 8 cut(s) 15, 78, 99, 156, 173, 207, 217, 264
SfcI CTRYAG 1 cut(s) 159
SinI GGWCC 1 cut(s) 82
SmlI CTYRAG 1 cut(s) 71
SmoI CTYRAG 1 cut(s) 71
Sse9I AATT 2 cut(s) 86, 195
SsiI CCGC 1 cut(s) 242
TaaI ACNGT 1 cut(s) 238
TaiI ACGT 2 cut(s) 99, 264
TasI AATT 2 cut(s) 86, 195
Tru1I TTAA 2 cut(s) 6, 173
Tru9I TTAA 2 cut(s) 6, 173
TseI GCWGC 1 cut(s) 134
TspDTI ATGAA 2 cut(s) 16, 156
VpaK11BI GGWCC 1 cut(s) 82
VspI ATTAAT 1 cut(s) 6
XapI RAATTY 1 cut(s) 195
XmiI GTMKAC 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.