Rw1G002180

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000160
Physical Location & Seq
Forward (+)
3926488 .. 3931967
5480 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G002180.1

Sequence Viewer

Length: 2142 bp
ATGGTGGAAAAAGAGGATTATGATCGCATCGCGACCTTAGAGTTCGTTAATGAAGAACTTTCTGACCCGGAGGACGAAGATGAAGTCAGCATTCAACTTGCCCCGGCAGCGCTGGACGATACACCTCCCAAAGTTAGAGACCCTACTGAGAAGGTTAATCTGGGCACAGTGGGCGAGCCTATGGAGGTATCTATCAGCGCTTACCTAGAGCCTAGCGAGAAACAGAGGCTCACTGAATTACTATTAGAGTTTAAAGATTGTTTTGCGGAGAAATATGAAGACATGCCCGGCCTGTCACCAGATTTGGTGTGTCATCAACTACCAACTCTTCCTGACAAGAGGCCCGTCAAGCAGGAACCTCGACGAATGAATTCGGAGACCCAGATTCTCGTAAAGGAGGAGGTAGAGAAAATGCACAAGTCGGGTATTATAAGGGTCGCCAAGTATAATCAGTGGCTATCTAATATAGTGCCTGTCCGGAAAAACAATGGCAAGATGAGAGTCTGCGTTGATTATAGAGACTTGAATCTCGCTACACCTAAGGATGTTTACCCCATGCCGGTCGCGGATATGTTGGTAGATGCTGATATCACCAGATTCCGGTCGCTGAAGAAGACAGACACAAGACCGCTTTCCGCTGCCCTGGCTTCGCGGGAGTTTTTGACGTGCAAGTTGCAACACTACATGCTATCATTTACCACTTGCATCATCGCTCAAACCGACTTGGTCAAATACATGTTGTCGCGGCCTATCTTGAGAGGCCGCATTGGCAAATGGGTATTGGCTCTCTCAGAGTTTTCGCTCCAATATGTACCACAGAAAGCTGTTAAGGGGCAAGCTATCGCAGACTTTCTCGCACATCATCCTACGTTAGAGATACCCACACTGAAGGAGTTAGAGATAGCCTCCACTACTACAACTCGACCAGATTTGGCGTGCATCCCTGAGTACGCGGTTTGGTACCAGGCTACGGTCTCTCTGCAGCCTTGGGTATTATTCTTTGATGGCTCCAGAACTGACACACTGGCTGGTGCGGGGATTGTTTTGGAAAACCCAGCCGAATTCCAATGTACTAATAATCAGGCTGAATATGAGGCTCTTATCATTGGACTCGAAGTCTTACTGGAAATGGGCGTACGGGACGTTCAGATTCGCGGCGATTCTCAGCTCGTTATAAACCAGCTCCAGGAAAAATATTGCTGTGCGAGTTGTTTGCTCATACCATATCTGAATCGCGCCATCGAGCTTCTGGACCAATTTACCGATGTCGATCTGGAGTATATACCACGCGAGCGTAACTTTGCAGCTAATGAGCTCGCTCAGTTGGCCACAGGCATCACATTGAAGTATGGAGTGCGCGAGCGCATTTTGAAAGTTGAGCGTCGCACAATACCTTCATGGCTTGCCCGACCTGATCCACCAGATGAGCCCGTACGAATCCCGCTGATTGAGTACCTCAAACAACCAGACAACAGAGCTGACAGGAAGATTCGTTTCCTCGCATTAAACTACTTCCTTCGAGGCGATGAATTGCGACGACGTGGGGAGGATGGTATAGACTTTCGGTGTGTCTATGGTCGCGAAGCTAAACGATTGATGCGGGAAGTACACCCGGGGATATGTGGAGCCCATCAAGCGGGACCTAAGATGCGCTGGCTTCTGCGACGTCATGGTTATTATTGGCCCAGCATTTTGAAGGATTGTATTGCATTTGCTAAAGGTTGTGAGGACTGTCAAGCGCATGGTCCAGTCCAGCATGTTCCTAACATTCCTATGCAGCCTATTATTAAGCCTTGGCCTGCGCGAGGCTGGGCACTGGACTTGATTGGGATGATCCATCCTCATTCTTCCCTTCAGCACAAGTTTATCATCGTCGCAACTGACTACTTCACTAAATGGGTTGAAGCAGAGCCTTTGAAGGAGGCTTCCAGTGCCATCATTCGCCAGTTTATTTTCCGTAATATTCTCTGCCGGTTTGGTATCCCCGAGGTGCTGGTTTCGGACAGGGGGGCAGCGTTCATGGGAGACCTGGTCGAGGAACTGGTCAATGATTTTGGCATCCAATTCATTCAGAGCACTCCGTATTACGCCCAATCTAATGGTCAAGCGGAAGCTAGCAACAAGACAATCATCACCTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

713

Amino Acids

81.35

Weight (kDa)

5.72

Isoelectric Point (pI)

41.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 357 - 442 2.2e-16 Reverse transcriptase-like
Integrase_H2C2 PF17921 528 - 581 1.4e-07 Integrase zinc binding domain
rve PF00665 602 - 695 5.7e-07 Integrase core domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000160)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11612 FvH4_2g25851 FvH4_3g22802 FvH4_3g22805 FvH4_3g31361 FvH4_3g31382 FvH4_4g05272 FvH4_4g05273 FvH4_4g14567 FvH4_4g15161 FvH4_5g22540 FvH4_6g13113 FvH4_6g31923 FvH4_6g31924 FvH4_6g33651 FvH4_6g45122 FvH4_7g03662
pyrus_communis pycom01g04240 pycom01g24010 pycom02g18210 pycom02g19420 pycom05g06510 pycom09g15750 pycom09g18940 pycom12g02580 pycom12g03100 pycom12g08310 pycom13g22710 pycom13g28060 pycom16g18340 pycom16g18350 pycom16g24880 pycom16g26240 pycom461g00260 pycom520g00980 pycom520g01320
rosa_chinensis RchiOBHm_Chr1g0320731 RchiOBHm_Chr2g0102771 RchiOBHm_Chr3g0462151 RchiOBHm_Chr5g0038141 RchiOBHm_Chr5g0069371 RchiOBHm_Chr7g0239101
rosa_multiflora Rmu_co8038252.1_g000001 Rmu_co8138412.1_g000001 Rmu_co8331087.1_g000001 Rmu_co8479311.1_g000001 Rmu_sc0000112.1_g000018 Rmu_sc0000346.1_g000012 Rmu_sc0002102.1_g000002 Rmu_sc0003505.1_g000013 Rmu_sc0004249.1_g000007 Rmu_sc0004448.1_g000010 Rmu_sc0004594.1_g000011 Rmu_sc0004915.1_g000010 Rmu_sc0008019.1_g000019 Rmu_sc0008303.1_g000001 Rmu_sc0008355.1_g000005 Rmu_sc0009253.1_g000018 Rmu_sc0010211.1_g000002 Rmu_sc0010252.1_g000009 Rmu_sc0011534.1_g000008 Rmu_sc0014811.1_g000009 Rmu_sc0019475.1_g000001 Rmu_sc0024897.1_g000001 Rmu_sc0024898.1_g000001 Rmu_sc0031791.1_g000001 Rmu_sc0038715.1_g000001
rosa_roxburghii Rroxscaffold_165G00436940 Rroxscaffold_174G00435270 Rroxscaffold_177G00434330 Rroxscaffold_177G00434340 Rroxscaffold_177G00434350 Rroxscaffold_1G00002160 Rroxscaffold_1G00025260 Rroxscaffold_1G00042950 Rroxscaffold_1G00068010 Rroxscaffold_2G00107530 Rroxscaffold_3G00221190 Rroxscaffold_3G00221520 Rroxscaffold_3G00223200 Rroxscaffold_4G00322230 Rroxscaffold_4G00331810 Rroxscaffold_5G00385150 Rroxscaffold_5G00387510 Rroxscaffold_6G00410520 Rroxscaffold_6G00423360 Rroxscaffold_6G00423370 Rroxscaffold_6G00429210 Rroxscaffold_7G00158300 Rroxscaffold_7G00163480 Rroxscaffold_7G00171410 Rroxscaffold_7G00178940 Rroxscaffold_7G00199480 Rroxscaffold_7G00205630 Rroxscaffold_7G00207440
rosa_rugosa Rorug01G0056400 Rorug04G0063900 Rorug05G0251400 Rorug07G0221900
rosa_samantha Rh1DG169400 Rh2AG292900 Rh2DG519200 Rh4DG260600 Rh5AG042600 Rh6BG117500
rosa_wichuraiana Rw0G001900 Rw0G005150 Rw0G006380 Rw0G015140 Rw0G016320 Rw0G019440 Rw0G019840 Rw0G023740 Rw1G001590 Rw1G002180 Rw1G003560 Rw1G004280 Rw1G006110 Rw1G006680 Rw1G007920 Rw1G008480 Rw1G009120 Rw1G010310 Rw1G014900 Rw1G019650 Rw1G022070 Rw1G022170 Rw1G041570 Rw2G002740 Rw2G005760 Rw2G032370 Rw2G046770 Rw2G050600 Rw2G051420 Rw3G015930 Rw3G016280 Rw3G019580 Rw3G028420 Rw4G003430 Rw4G005350 Rw4G007530 Rw4G008150 Rw4G009580 Rw4G010250 Rw4G015800 Rw4G017000 Rw4G017910 Rw4G018510 Rw4G019700 Rw4G031010 Rw5G012650 Rw5G020140 Rw5G022060 Rw5G034420 Rw5G035560 Rw5G043010 Rw5G046750 Rw5G047340 Rw5G049500 Rw6G001390 Rw6G002210 Rw6G004530 Rw6G004770 Rw6G005100 Rw6G005890 Rw6G011860 Rw6G014680 Rw6G019480 Rw6G028970 Rw6G033800 Rw7G013050 Rw7G014800 Rw7G025760 Rw7G025850 Rw7G026730 Rw7G026870 Rw7G036330 Rw7G036430 Rw7G039320 Rw7G039510 Rw7G039560 Rw7G041370 Rw7G042050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 431, 1175
AatII GACGTC 1 cut(s) 1669
Acc65I GGTACC 1 cut(s) 960
AccB1I GGYRCC 1 cut(s) 960
AccIII TCCGGA 1 cut(s) 477
AclWI GGATC 2 cut(s) 1409, 1828
AcoI YGGCCR 1 cut(s) 1326
AcsI RAATTY 2 cut(s) 370, 1061
AcuI CTGAAG 3 cut(s) 629, 908, 1838
AcyI GRCGYC 1 cut(s) 1666
AfaI GTAC 8 cut(s) 813, 950, 962, 1072, 1137, 1434, 1454, 1608
AfeI AGCGCT 2 cut(s) 111, 199
AfiI CCNNNNNNNGG 7 cut(s) 559, 600, 970, 1186, 1636, 1805, 2035
AflIII ACRYGT 1 cut(s) 735
AgsI TTSAA 7 cut(s) 95, 526, 1345, 1372, 1696, 1904, 1918
AhdI GACNNNNNGTC 1 cut(s) 1115
AjiI CACGTC 2 cut(s) 666, 1541
AjnI CCWGG 4 cut(s) 642, 963, 1185, 2028
Alw21I GWGCWC 2 cut(s) 1317, 2078
Alw26I GTCTC 5 cut(s) 132, 371, 513, 979, 2019
AlwI GGATC 2 cut(s) 1409, 1828
Ama87I CYCGRG 2 cut(s) 1612, 1985
Aor13HI TCCGGA 1 cut(s) 477
Aor51HI AGCGCT 2 cut(s) 111, 199
AoxI GGCC 7 cut(s) 289, 341, 746, 760, 1326, 1682, 1796
ApeKI GCWGC 6 cut(s) 107, 638, 982, 1304, 1777, 2012
ApoI RAATTY 2 cut(s) 370, 1061
ArsI GACNNNNNNTTYG 2 cut(s) 69, 101
Asp700I GAANNNNTTC 1 cut(s) 370
Asp718I GGTACC 1 cut(s) 960
AspLEI GCGC 8 cut(s) 112, 200, 1238, 1359, 1365, 1653, 1741, 1804
AspS9I GGNCC 5 cut(s) 342, 1252, 1640, 1683, 1745
AsuC2I CCSGG 5 cut(s) 68, 104, 288, 1613, 1614
AsuHPI GGTGA 3 cut(s) 288, 583, 2125
AsuNHI GCTAGC 1 cut(s) 2114
AvaI CYCGRG 2 cut(s) 1612, 1985
AvaII GGWCC 3 cut(s) 1252, 1640, 1745
AxyI CCTNAGG 1 cut(s) 540
BaeGI GKGCMC 2 cut(s) 167, 1816
BalI TGGCCA 1 cut(s) 1328
BanI GGYRCC 1 cut(s) 960
BanII GRGCYC 3 cut(s) 1317, 1431, 1630
BbsI GAAGAC 2 cut(s) 285, 620
Bbv12I GWGCWC 2 cut(s) 1317, 2078
BbvI GCAGC 6 cut(s) 119, 625, 994, 1316, 1789, 2024
BccI CCATC 6 cut(s) 998, 1247, 1544, 1638, 1845, 1943
BcgI CGANNNNNNTGC 4 cut(s) 341, 375, 1195, 1229
BciT130I CCWGG 4 cut(s) 644, 965, 1187, 2030
BciVI GTATCC 1 cut(s) 1991
BcnI CCSGG 5 cut(s) 68, 104, 288, 1613, 1614
BcoDI GTCTC 5 cut(s) 132, 371, 513, 979, 2019
BfaI CTAG 3 cut(s) 206, 213, 2115
BfmI CTRYAG 1 cut(s) 980
BfoI RGCGCY 2 cut(s) 113, 201
BfuI GTATCC 1 cut(s) 1991
BglI GCCNNNNNGGC 1 cut(s) 768
BisI GCNGC 9 cut(s) 108, 639, 746, 763, 983, 1156, 1305, 1778, 2013
BlsI GCNGC 9 cut(s) 109, 640, 747, 764, 984, 1157, 1306, 1779, 2014
Bme1390I CCNGG 9 cut(s) 68, 104, 288, 644, 965, 1187, 1613, 1614, 2030
Bme18I GGWCC 3 cut(s) 1252, 1640, 1745
BmeRI GACNNNNNGTC 1 cut(s) 1115
BmeT110I CYCGRG 2 cut(s) 1612, 1985
BmgBI CACGTC 2 cut(s) 666, 1541
BmgT120I GGNCC 5 cut(s) 342, 1252, 1640, 1683, 1745
BmiI GGNNCC 5 cut(s) 357, 962, 1009, 1627, 1641
BmrFI CCNGG 9 cut(s) 68, 104, 288, 644, 965, 1187, 1613, 1614, 2030
BmsI GCATC 8 cut(s) 36, 571, 714, 948, 1344, 1587, 1638, 2067
BmtI GCTAGC 1 cut(s) 2118
BpiI GAAGAC 2 cut(s) 285, 620
BplI GAGNNNNNCTC 2 cut(s) 890, 922
BpmI CTGGAG 3 cut(s) 994, 1169, 1295
BpuEI CTTGAG 1 cut(s) 775
BpuMI CCSGG 5 cut(s) 68, 104, 288, 1613, 1614
BsaBI GATNNNNATC 2 cut(s) 21, 1269
BsaHI GRCGYC 1 cut(s) 1666
BsaI GGTCTC 4 cut(s) 132, 371, 979, 2019
BsaJI CCNNGG 7 cut(s) 102, 642, 986, 1612, 1613, 1793, 1986
BsaWI WCCGGW 2 cut(s) 477, 600
BsaXI ACNNNNNCTCC 2 cut(s) 2016, 2046
Bsc4I CCNNNNNNNGG 7 cut(s) 559, 600, 970, 1186, 1636, 1805, 2035
Bse118I RCCGGY 2 cut(s) 559, 1971
Bse1I ACTGG 7 cut(s) 1029, 1128, 1748, 1821, 1929, 1945, 2046
Bse21I CCTNAGG 1 cut(s) 540
Bse8I GATNNNNATC 2 cut(s) 21, 1269
BseAI TCCGGA 1 cut(s) 477
BseBI CCWGG 4 cut(s) 644, 965, 1187, 2030
BseDI CCNNGG 7 cut(s) 102, 642, 986, 1612, 1613, 1793, 1986
BseGI GGATG 7 cut(s) 550, 862, 939, 1555, 1836, 1837, 2058
BseJI GATNNNNATC 2 cut(s) 21, 1269
BseLI CCNNNNNNNGG 7 cut(s) 559, 600, 970, 1186, 1636, 1805, 2035
BseMII CTCAG 5 cut(s) 138, 804, 936, 1178, 1334
BseNI ACTGG 7 cut(s) 1029, 1128, 1748, 1821, 1929, 1945, 2046
BseRI GAGGAG 1 cut(s) 413
BseSI GKGCMC 2 cut(s) 167, 1816
BseXI GCAGC 6 cut(s) 119, 625, 994, 1316, 1789, 2024
BseYI CCCAGC 3 cut(s) 1054, 1685, 1809
Bsh1285I CGRYCG 2 cut(s) 564, 605
BshFI GGCC 7 cut(s) 291, 343, 748, 762, 1328, 1684, 1798
BshNI GGYRCC 1 cut(s) 960
BsiEI CGRYCG 2 cut(s) 564, 605
BsiHKAI GWGCWC 2 cut(s) 1317, 2078
BsiHKCI CYCGRG 2 cut(s) 1612, 1985
BsiSI CCGG 8 cut(s) 68, 104, 288, 478, 560, 601, 1613, 1972
BsiWI CGTACG 2 cut(s) 1135, 1432
BslFI GGGAC 2 cut(s) 1154, 1653
BslI CCNNNNNNNGG 7 cut(s) 559, 600, 970, 1186, 1636, 1805, 2035
BsmAI GTCTC 5 cut(s) 132, 371, 513, 979, 2019
BsmFI GGGAC 2 cut(s) 1154, 1653
BsmI GAATGC 1 cut(s) 90
BsnI GGCC 7 cut(s) 291, 343, 748, 762, 1328, 1684, 1798
Bso31I GGTCTC 4 cut(s) 132, 371, 979, 2019
BsoBI CYCGRG 2 cut(s) 1612, 1985
Bsp1286I GDGCHC 6 cut(s) 167, 1317, 1431, 1630, 1816, 2078
Bsp13I TCCGGA 1 cut(s) 477
Bsp143I GATC 4 cut(s) 22, 1270, 1414, 1833
Bsp68I TCGCGA 2 cut(s) 32, 1581
BspANI GGCC 7 cut(s) 291, 343, 748, 762, 1328, 1684, 1798
BspCNI CTCAG 5 cut(s) 139, 803, 937, 1177, 1333
BspEI TCCGGA 1 cut(s) 477
BspLI GGNNCC 5 cut(s) 357, 962, 1009, 1627, 1641
BspMAI CTGCAG 1 cut(s) 984
BspOI GCTAGC 1 cut(s) 2118
BspPI GGATC 2 cut(s) 1409, 1828
BspT107I GGYRCC 1 cut(s) 960
BspTNI GGTCTC 4 cut(s) 132, 371, 979, 2019
BsrFI RCCGGY 2 cut(s) 559, 1971
BsrI ACTGG 7 cut(s) 1029, 1128, 1748, 1821, 1929, 1945, 2046
BssAI RCCGGY 2 cut(s) 559, 1971
BssECI CCNNGG 7 cut(s) 102, 642, 986, 1612, 1613, 1793, 1986
BssMI GATC 4 cut(s) 22, 1270, 1414, 1833
BssNI GRCGYC 1 cut(s) 1666
BssT1I CCWWGG 2 cut(s) 986, 1793
Bst2UI CCWGG 4 cut(s) 644, 965, 1187, 2030
Bst4CI ACNGT 3 cut(s) 169, 973, 1733
Bst6I CTCTTC 1 cut(s) 333
BstACI GRCGYC 1 cut(s) 1666
BstDEI CTNAG 8 cut(s) 37, 147, 540, 790, 945, 1164, 1320, 1644
BstENI CCTNNNNNAGG 2 cut(s) 1803, 2033
BstF5I GGATG 7 cut(s) 550, 862, 939, 1555, 1836, 1837, 2058
BstH2I RGCGCY 2 cut(s) 113, 201
BstHHI GCGC 8 cut(s) 112, 200, 1238, 1359, 1365, 1653, 1741, 1804
BstKTI GATC 4 cut(s) 25, 1273, 1417, 1836
BstMAI GTCTC 5 cut(s) 132, 371, 513, 979, 2019
BstMBI GATC 4 cut(s) 22, 1270, 1414, 1833
BstMCI CGRYCG 2 cut(s) 564, 605
BstMWI GCNNNNNNNGC 8 cut(s) 107, 171, 349, 644, 768, 1325, 1634, 1931
BstNI CCWGG 4 cut(s) 644, 965, 1187, 2030
BstNSI RCATGY 4 cut(s) 286, 688, 739, 1760
BstSCI CCNGG 9 cut(s) 66, 102, 286, 642, 963, 1185, 1611, 1612, 2028
BstSFI CTRYAG 1 cut(s) 980
BstSLI GKGCMC 2 cut(s) 167, 1816
BstV1I GCAGC 6 cut(s) 119, 625, 994, 1316, 1789, 2024
BstV2I GAAGAC 2 cut(s) 285, 620
BstXI CCANNNNNNTGG 1 cut(s) 2099
Bsu36I CCTNAGG 1 cut(s) 540
BsuI GTATCC 1 cut(s) 1991
BsuRI GGCC 7 cut(s) 291, 343, 748, 762, 1328, 1684, 1798
BtgZI GCGATG 3 cut(s) 13, 694, 1539
BtrI CACGTC 2 cut(s) 666, 1541
BtsCI GGATG 7 cut(s) 550, 862, 939, 1555, 1836, 1837, 2058
BtsIMutI CAGTG 7 cut(s) 174, 231, 458, 884, 1022, 1814, 1936
BtuMI TCGCGA 2 cut(s) 32, 1581
CfoI GCGC 8 cut(s) 112, 200, 1238, 1359, 1365, 1653, 1741, 1804
Cfr10I RCCGGY 2 cut(s) 559, 1971
Cfr13I GGNCC 5 cut(s) 342, 1252, 1640, 1683, 1745
Cfr9I CCCGGG 1 cut(s) 1612
CseI GACGC 1 cut(s) 1370
CsiI ACCWGGT 1 cut(s) 2028
Csp6I GTAC 8 cut(s) 812, 949, 961, 1071, 1136, 1433, 1453, 1607
CviAII CATG 9 cut(s) 283, 556, 685, 736, 1398, 1670, 1742, 1757, 2020
CviQI GTAC 8 cut(s) 812, 949, 961, 1071, 1136, 1433, 1453, 1607
DdeI CTNAG 8 cut(s) 37, 147, 540, 790, 945, 1164, 1320, 1644
DpnI GATC 4 cut(s) 24, 1272, 1416, 1835
DpnII GATC 4 cut(s) 22, 1270, 1414, 1833
DraI TTTAAA 1 cut(s) 253
DriI GACNNNNNGTC 1 cut(s) 1115
EaeI YGGCCR 1 cut(s) 1326
Eam1104I CTCTTC 1 cut(s) 333
Eam1105I GACNNNNNGTC 1 cut(s) 1115
EarI CTCTTC 1 cut(s) 333
Ecl136II GAGCTC 1 cut(s) 1315
Eco130I CCWWGG 2 cut(s) 986, 1793
Eco24I GRGCYC 3 cut(s) 1317, 1431, 1630
Eco31I GGTCTC 4 cut(s) 132, 371, 979, 2019
Eco32I GATATC 1 cut(s) 589
Eco47I GGWCC 3 cut(s) 1252, 1640, 1745
Eco47III AGCGCT 2 cut(s) 111, 199
Eco53kI GAGCTC 1 cut(s) 1315
Eco57I CTGAAG 3 cut(s) 629, 908, 1838
Eco81I CCTNAGG 1 cut(s) 540
Eco88I CYCGRG 2 cut(s) 1612, 1985
EcoICRI GAGCTC 1 cut(s) 1315
EcoNI CCTNNNNNAGG 2 cut(s) 1803, 2033
EcoO109I RGGNCCY 1 cut(s) 1640
EcoRI GAATTC 2 cut(s) 370, 1061
EcoRII CCWGG 4 cut(s) 642, 963, 1185, 2028
EcoRV GATATC 1 cut(s) 589
EcoT14I CCWWGG 2 cut(s) 986, 1793
EcoT38I GRGCYC 3 cut(s) 1317, 1431, 1630
ErhI CCWWGG 2 cut(s) 986, 1793
FaeI CATG 9 cut(s) 286, 559, 688, 739, 1401, 1673, 1745, 1760, 2023
FaqI GGGAC 2 cut(s) 1154, 1653
FatI CATG 9 cut(s) 282, 555, 684, 735, 1397, 1669, 1741, 1756, 2019
FauI CCCGC 5 cut(s) 645, 1027, 1449, 1593, 1630
Fnu4HI GCNGC 9 cut(s) 108, 639, 746, 763, 983, 1156, 1305, 1778, 2013
FokI GGATG 7 cut(s) 557, 849, 926, 1562, 1824, 1843, 2045
FriOI GRGCYC 3 cut(s) 1317, 1431, 1630
Fsp4HI GCNGC 9 cut(s) 108, 639, 746, 763, 983, 1156, 1305, 1778, 2013
FspBI CTAG 3 cut(s) 206, 213, 2115
GlaI GCGC 8 cut(s) 111, 199, 1237, 1358, 1364, 1652, 1740, 1803
GluI GCNGC 9 cut(s) 108, 639, 746, 763, 983, 1156, 1305, 1778, 2013
GsaI CCCAGC 3 cut(s) 1058, 1689, 1813
GsuI CTGGAG 3 cut(s) 994, 1169, 1295
HaeII RGCGCY 2 cut(s) 113, 201
HaeIII GGCC 7 cut(s) 291, 343, 748, 762, 1328, 1684, 1798
HapII CCGG 8 cut(s) 68, 104, 288, 478, 560, 601, 1613, 1972
HgaI GACGC 1 cut(s) 1370
HhaI GCGC 8 cut(s) 112, 200, 1238, 1359, 1365, 1653, 1741, 1804
Hin1I GRCGYC 1 cut(s) 1666
Hin1II CATG 9 cut(s) 286, 559, 688, 739, 1401, 1673, 1745, 1760, 2023
Hin6I GCGC 8 cut(s) 110, 198, 1236, 1357, 1363, 1651, 1739, 1802
HinP1I GCGC 8 cut(s) 110, 198, 1236, 1357, 1363, 1651, 1739, 1802
HpaII CCGG 8 cut(s) 68, 104, 288, 478, 560, 601, 1613, 1972
HphI GGTGA 3 cut(s) 288, 583, 2125
Hpy166II GTNNAC 2 cut(s) 550, 1609
Hpy188I TCNGA 7 cut(s) 64, 376, 793, 1149, 1230, 2002, 2073
Hpy188III TCNNGA 8 cut(s) 31, 332, 478, 754, 1011, 1250, 1274, 1580
Hpy8I GTNNAC 2 cut(s) 550, 1609
Hpy99I CGWCG 6 cut(s) 366, 1386, 1539, 1542, 1668, 1877
HpyAV CCTTC 7 cut(s) 145, 883, 1404, 1526, 1690, 1862, 1912
HpyCH4III ACNGT 3 cut(s) 169, 973, 1733
HpyCH4IV ACGT 5 cut(s) 665, 869, 1143, 1540, 1666
HpyCH4V TGCA 9 cut(s) 415, 669, 676, 705, 939, 982, 1304, 1709, 1777
HpyF10VI GCNNNNNNNGC 8 cut(s) 107, 171, 349, 644, 768, 1325, 1634, 1931
HpyF3I CTNAG 8 cut(s) 37, 147, 540, 790, 945, 1164, 1320, 1644
HpySE526I ACGT 5 cut(s) 665, 869, 1143, 1540, 1666
Hsp92I GRCGYC 1 cut(s) 1666
Hsp92II CATG 9 cut(s) 286, 559, 688, 739, 1401, 1673, 1745, 1760, 2023
HspAI GCGC 8 cut(s) 110, 198, 1236, 1357, 1363, 1651, 1739, 1802
Kpn2I TCCGGA 1 cut(s) 477
KpnI GGTACC 1 cut(s) 964
Kzo9I GATC 4 cut(s) 22, 1270, 1414, 1833
LmnI GCTCC 4 cut(s) 807, 1013, 1188, 1625
Lsp1109I GCAGC 6 cut(s) 119, 625, 994, 1316, 1789, 2024
LweI GCATC 8 cut(s) 36, 571, 714, 948, 1344, 1587, 1638, 2067
MabI ACCWGGT 1 cut(s) 2028
MaeI CTAG 3 cut(s) 206, 213, 2115
MaeII ACGT 5 cut(s) 665, 869, 1143, 1540, 1666
MaeIII GTNAC 2 cut(s) 294, 1295
MalI GATC 4 cut(s) 24, 1272, 1416, 1835
MboI GATC 4 cut(s) 22, 1270, 1414, 1833
MboII GAAGA 8 cut(s) 65, 89, 290, 320, 622, 625, 1498, 1839
MhlI GDGCHC 6 cut(s) 167, 1317, 1431, 1630, 1816, 2078
MlsI TGGCCA 1 cut(s) 1328
MluCI AATT 6 cut(s) 236, 370, 1061, 1256, 1529, 2063
MluNI TGGCCA 1 cut(s) 1328
MlyI GAGTC 2 cut(s) 510, 1104
Mox20I TGGCCA 1 cut(s) 1328
MroI TCCGGA 1 cut(s) 477
MroXI GAANNNNTTC 1 cut(s) 370
MscI TGGCCA 1 cut(s) 1328
MseI TTAA 6 cut(s) 48, 156, 252, 828, 1505, 1788
MslI CAYNNNNRTG 1 cut(s) 1772
Msp20I TGGCCA 1 cut(s) 1328
MspA1I CMGCKG 2 cut(s) 638, 1444
MspI CCGG 8 cut(s) 68, 104, 288, 478, 560, 601, 1613, 1972
MspR9I CCNGG 9 cut(s) 68, 104, 288, 644, 965, 1187, 1613, 1614, 2030
Mva1269I GAATGC 1 cut(s) 90
MvaI CCWGG 4 cut(s) 644, 965, 1187, 2030
MwoI GCNNNNNNNGC 8 cut(s) 107, 171, 349, 644, 768, 1325, 1634, 1931
NciI CCSGG 5 cut(s) 68, 104, 288, 1613, 1614
NdeII GATC 4 cut(s) 22, 1270, 1414, 1833
NheI GCTAGC 1 cut(s) 2114
NlaIII CATG 9 cut(s) 286, 559, 688, 739, 1401, 1673, 1745, 1760, 2023
NlaIV GGNNCC 5 cut(s) 357, 962, 1009, 1627, 1641
NmuCI GTSAC 1 cut(s) 294
NruI TCGCGA 2 cut(s) 32, 1581
NspI RCATGY 4 cut(s) 286, 688, 739, 1760
PciI ACATGT 1 cut(s) 735
PcsI WCGNNNNNNNCGW 1 cut(s) 717
PctI GAATGC 1 cut(s) 90
PdmI GAANNNNTTC 1 cut(s) 370
PfeI GAWTC 8 cut(s) 385, 526, 597, 1150, 1160, 1231, 1437, 1489
Pfl23II CGTACG 2 cut(s) 1135, 1432
PflFI GACNNNGTC 2 cut(s) 725, 2030
PfoI TCCNGGA 1 cut(s) 1185
PkrI GCNGC 9 cut(s) 109, 640, 747, 764, 984, 1157, 1306, 1779, 2014
PleI GAGTC 2 cut(s) 509, 1104
PpsI GAGTC 2 cut(s) 509, 1104
PpuMI RGGWCCY 1 cut(s) 1640
PscI ACATGT 1 cut(s) 735
PsiI TTATAA 2 cut(s) 431, 1175
Psp124BI GAGCTC 1 cut(s) 1317
Psp5II RGGWCCY 1 cut(s) 1640
Psp6I CCWGG 4 cut(s) 642, 963, 1185, 2028
PspFI CCCAGC 3 cut(s) 1054, 1685, 1809
PspGI CCWGG 4 cut(s) 642, 963, 1185, 2028
PspLI CGTACG 2 cut(s) 1135, 1432
PspN4I GGNNCC 5 cut(s) 357, 962, 1009, 1627, 1641
PspPI GGNCC 5 cut(s) 342, 1252, 1640, 1683, 1745
PspPPI RGGWCCY 1 cut(s) 1640
PsrI GAACNNNNNNTAC 2 cut(s) 1128, 1160
PstI CTGCAG 1 cut(s) 984
PsyI GACNNNGTC 2 cut(s) 725, 2030
RruI TCGCGA 2 cut(s) 32, 1581
RsaI GTAC 8 cut(s) 813, 950, 962, 1072, 1137, 1434, 1454, 1608
RsaNI GTAC 8 cut(s) 812, 949, 961, 1071, 1136, 1433, 1453, 1607
RseI CAYNNNNRTG 1 cut(s) 1772
SacI GAGCTC 1 cut(s) 1317
SaqAI TTAA 6 cut(s) 48, 156, 252, 828, 1505, 1788
SatI GCNGC 9 cut(s) 108, 639, 746, 763, 983, 1156, 1305, 1778, 2013
Sau3AI GATC 4 cut(s) 22, 1270, 1414, 1833
Sau96I GGNCC 5 cut(s) 342, 1252, 1640, 1683, 1745
SchI GAGTC 2 cut(s) 510, 1104
ScrFI CCNGG 9 cut(s) 68, 104, 288, 644, 965, 1187, 1613, 1614, 2030
SduI GDGCHC 6 cut(s) 167, 1317, 1431, 1630, 1816, 2078
SexAI ACCWGGT 1 cut(s) 2028
SfaNI GCATC 8 cut(s) 36, 571, 714, 948, 1344, 1587, 1638, 2067
SfcI CTRYAG 1 cut(s) 980
SinI GGWCC 3 cut(s) 1252, 1640, 1745
SmaI CCCGGG 1 cut(s) 1614
SmiMI CAYNNNNRTG 1 cut(s) 1772
SmlI CTYRAG 1 cut(s) 754
SmoI CTYRAG 1 cut(s) 754
Sse9I AATT 6 cut(s) 236, 370, 1061, 1256, 1529, 2063
SspI AATATT 2 cut(s) 1196, 1963
SspMI CTAG 3 cut(s) 206, 213, 2115
SstI GAGCTC 1 cut(s) 1317
StyD4I CCNGG 9 cut(s) 66, 102, 286, 642, 963, 1185, 1611, 1612, 2028
StyI CCWWGG 2 cut(s) 986, 1793
TaaI ACNGT 3 cut(s) 169, 973, 1733
TaiI ACGT 5 cut(s) 668, 872, 1146, 1543, 1669
TaqI TCGA 7 cut(s) 361, 922, 1113, 1242, 1269, 1519, 2034
TasI AATT 6 cut(s) 236, 370, 1061, 1256, 1529, 2063
TatI WGTACW 2 cut(s) 1070, 1606
TauI GCSGC 3 cut(s) 748, 765, 1158
TfiI GAWTC 8 cut(s) 385, 526, 597, 1150, 1160, 1231, 1437, 1489
Tru1I TTAA 6 cut(s) 48, 156, 252, 828, 1505, 1788
Tru9I TTAA 6 cut(s) 48, 156, 252, 828, 1505, 1788
TscAI CASTG 7 cut(s) 174, 238, 458, 891, 1029, 1821, 1936
TseFI GTSAC 1 cut(s) 294
TseI GCWGC 6 cut(s) 107, 638, 982, 1304, 1777, 2012
Tsp45I GTSAC 1 cut(s) 294
TspDTI ATGAA 8 cut(s) 66, 96, 291, 383, 1386, 1542, 2008, 2056
TspGWI ACGGA 2 cut(s) 1946, 2070
TspMI CCCGGG 1 cut(s) 1612
TspRI CASTG 7 cut(s) 174, 238, 458, 891, 1029, 1821, 1936
Tth111I GACNNNGTC 2 cut(s) 725, 2030
VpaK11BI GGWCC 3 cut(s) 1252, 1640, 1745
XagI CCTNNNNNAGG 2 cut(s) 1803, 2033
XapI RAATTY 2 cut(s) 370, 1061
XceI RCATGY 4 cut(s) 286, 688, 739, 1760
XcmI CCANNNNNNNNNTGG 1 cut(s) 1246
XmaI CCCGGG 1 cut(s) 1612
XmnI GAANNNNTTC 1 cut(s) 370
XspI CTAG 3 cut(s) 206, 213, 2115
ZraI GACGTC 1 cut(s) 1667
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.