FvH4_6g45122

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000160
Physical Location & Seq
Reverse (-)
34649116 .. 34649643
528 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g45122.t1

Sequence Viewer

Length: 528 bp
ATGTTGGAGTTGAACCCGTGTGTCTGGCATGAGGAACTCTACCACACCTTGTGGGCTTACAGCACTTCAAAGCGCGGCCCGACGGATACTATCCCGTACGCTCTCATGTACGGTCATGATGCCGTCCTTCCCCTCGAGATCAATATAGCTTCACTCCGCGTTCAGGAACAGCATCAACTACTTGGCGAGGATTACGTCCAAGCTATGTGGCAGGAGCTTGAAGATCTCGACGAGCACCGCGTCGCTGCTTTCAACAATCTCATCCTCGAGAAACAACGCATCGCGCGTTCGTACGATAAAGTCACGCGCGGACAGAGCTATGCTGAGGGCCAAAAAGTGTGGCGCGCGGTACTCCCACTTGGGGAAAAAACCGACGGTCGGGGCAAGTGGTCCGCTCGATGGGAAGGCCCCTTTATTTTTCATCGTATACTCCCCAAGGGGGCATACCACCTGCGCGACTTGGACAGTACCATTCATTGCAATCCTATTAATGGCCGTTTCCTCAAGCGCCACATTGCTGGAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

176

Amino Acids

20.33

Weight (kDa)

6.75

Isoelectric Point (pI)

46.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000160)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11612 FvH4_2g25851 FvH4_3g22802 FvH4_3g22805 FvH4_3g31361 FvH4_3g31382 FvH4_4g05272 FvH4_4g05273 FvH4_4g14567 FvH4_4g15161 FvH4_5g22540 FvH4_6g13113 FvH4_6g31923 FvH4_6g31924 FvH4_6g33651 FvH4_6g45122 FvH4_7g03662
pyrus_communis pycom01g04240 pycom01g24010 pycom02g18210 pycom02g19420 pycom05g06510 pycom09g15750 pycom09g18940 pycom12g02580 pycom12g03100 pycom12g08310 pycom13g22710 pycom13g28060 pycom16g18340 pycom16g18350 pycom16g24880 pycom16g26240 pycom461g00260 pycom520g00980 pycom520g01320
rosa_chinensis RchiOBHm_Chr1g0320731 RchiOBHm_Chr2g0102771 RchiOBHm_Chr3g0462151 RchiOBHm_Chr5g0038141 RchiOBHm_Chr5g0069371 RchiOBHm_Chr7g0239101
rosa_multiflora Rmu_co8038252.1_g000001 Rmu_co8138412.1_g000001 Rmu_co8331087.1_g000001 Rmu_co8479311.1_g000001 Rmu_sc0000112.1_g000018 Rmu_sc0000346.1_g000012 Rmu_sc0002102.1_g000002 Rmu_sc0003505.1_g000013 Rmu_sc0004249.1_g000007 Rmu_sc0004448.1_g000010 Rmu_sc0004594.1_g000011 Rmu_sc0004915.1_g000010 Rmu_sc0008019.1_g000019 Rmu_sc0008303.1_g000001 Rmu_sc0008355.1_g000005 Rmu_sc0009253.1_g000018 Rmu_sc0010211.1_g000002 Rmu_sc0010252.1_g000009 Rmu_sc0011534.1_g000008 Rmu_sc0014811.1_g000009 Rmu_sc0019475.1_g000001 Rmu_sc0024897.1_g000001 Rmu_sc0024898.1_g000001 Rmu_sc0031791.1_g000001 Rmu_sc0038715.1_g000001
rosa_roxburghii Rroxscaffold_165G00436940 Rroxscaffold_174G00435270 Rroxscaffold_177G00434330 Rroxscaffold_177G00434340 Rroxscaffold_177G00434350 Rroxscaffold_1G00002160 Rroxscaffold_1G00025260 Rroxscaffold_1G00042950 Rroxscaffold_1G00068010 Rroxscaffold_2G00107530 Rroxscaffold_3G00221190 Rroxscaffold_3G00221520 Rroxscaffold_3G00223200 Rroxscaffold_4G00322230 Rroxscaffold_4G00331810 Rroxscaffold_5G00385150 Rroxscaffold_5G00387510 Rroxscaffold_6G00410520 Rroxscaffold_6G00423360 Rroxscaffold_6G00423370 Rroxscaffold_6G00429210 Rroxscaffold_7G00158300 Rroxscaffold_7G00163480 Rroxscaffold_7G00171410 Rroxscaffold_7G00178940 Rroxscaffold_7G00199480 Rroxscaffold_7G00205630 Rroxscaffold_7G00207440
rosa_rugosa Rorug01G0056400 Rorug04G0063900 Rorug05G0251400 Rorug07G0221900
rosa_samantha Rh1DG169400 Rh2AG292900 Rh2DG519200 Rh4DG260600 Rh5AG042600 Rh6BG117500
rosa_wichuraiana Rw0G001900 Rw0G005150 Rw0G006380 Rw0G015140 Rw0G016320 Rw0G019440 Rw0G019840 Rw0G023740 Rw1G001590 Rw1G002180 Rw1G003560 Rw1G004280 Rw1G006110 Rw1G006680 Rw1G007920 Rw1G008480 Rw1G009120 Rw1G010310 Rw1G014900 Rw1G019650 Rw1G022070 Rw1G022170 Rw1G041570 Rw2G002740 Rw2G005760 Rw2G032370 Rw2G046770 Rw2G050600 Rw2G051420 Rw3G015930 Rw3G016280 Rw3G019580 Rw3G028420 Rw4G003430 Rw4G005350 Rw4G007530 Rw4G008150 Rw4G009580 Rw4G010250 Rw4G015800 Rw4G017000 Rw4G017910 Rw4G018510 Rw4G019700 Rw4G031010 Rw5G012650 Rw5G020140 Rw5G022060 Rw5G034420 Rw5G035560 Rw5G043010 Rw5G046750 Rw5G047340 Rw5G049500 Rw6G001390 Rw6G002210 Rw6G004530 Rw6G004770 Rw6G005100 Rw6G005890 Rw6G011860 Rw6G014680 Rw6G019480 Rw6G028970 Rw6G033800 Rw7G013050 Rw7G014800 Rw7G025760 Rw7G025850 Rw7G026730 Rw7G026870 Rw7G036330 Rw7G036430 Rw7G039320 Rw7G039510 Rw7G039560 Rw7G041370 Rw7G042050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 459
Acc36I ACCTGC 1 cut(s) 459
AccBSI CCGCTC 1 cut(s) 395
AccI GTMKAC 1 cut(s) 427
AciI CCGC 6 cut(s) 75, 157, 238, 309, 347, 393
AcoI YGGCCR 1 cut(s) 493
AdeI CACNNNGTG 1 cut(s) 51
AfaI GTAC 5 cut(s) 98, 110, 293, 351, 469
AfiI CCNNNNNNNGG 6 cut(s) 163, 361, 378, 399, 439, 491
AgsI TTSAA 4 cut(s) 13, 69, 221, 253
AluBI AGCT 4 cut(s) 149, 203, 217, 318
AluI AGCT 4 cut(s) 149, 203, 217, 318
Alw21I GWGCWC 1 cut(s) 237
Ama87I CYCGRG 2 cut(s) 134, 266
AoxI GGCC 4 cut(s) 76, 328, 406, 493
ApeKI GCWGC 1 cut(s) 245
AseI ATTAAT 1 cut(s) 489
AspLEI GCGC 7 cut(s) 75, 286, 309, 345, 347, 456, 510
AspS9I GGNCC 4 cut(s) 77, 328, 390, 407
AvaI CYCGRG 2 cut(s) 134, 266
AvaII GGWCC 1 cut(s) 390
Bbv12I GWGCWC 1 cut(s) 237
BbvCI CCTCAGC 1 cut(s) 324
BbvI GCAGC 1 cut(s) 232
BccI CCATC 1 cut(s) 393
BceAI ACGGC 2 cut(s) 107, 480
BciVI GTATCC 1 cut(s) 79
BfoI RGCGCY 1 cut(s) 511
BfuAI ACCTGC 1 cut(s) 459
BfuI GTATCC 1 cut(s) 79
BglII AGATCT 1 cut(s) 223
BisI GCNGC 2 cut(s) 76, 246
BlsI GCNGC 2 cut(s) 77, 247
Bme18I GGWCC 1 cut(s) 390
BmeT110I CYCGRG 2 cut(s) 134, 266
BmgT120I GGNCC 4 cut(s) 77, 328, 390, 407
BmiI GGNNCC 1 cut(s) 409
BmsI GCATC 3 cut(s) 109, 181, 288
Bpu10I CCTNAGC 1 cut(s) 324
BpuEI CTTGAG 1 cut(s) 488
BsaJI CCNNGG 1 cut(s) 435
Bsc4I CCNNNNNNNGG 6 cut(s) 163, 361, 378, 399, 439, 491
Bse3DI GCAATG 2 cut(s) 475, 513
BseDI CCNNGG 1 cut(s) 435
BseGI GGATG 1 cut(s) 261
BseLI CCNNNNNNNGG 6 cut(s) 163, 361, 378, 399, 439, 491
BseMI GCAATG 2 cut(s) 475, 513
BseMII CTCAG 1 cut(s) 315
BsePI GCGCGC 1 cut(s) 343
BseXI GCAGC 1 cut(s) 232
Bsh1285I CGRYCG 1 cut(s) 379
BshFI GGCC 4 cut(s) 78, 330, 408, 495
BsiEI CGRYCG 1 cut(s) 379
BsiHKAI GWGCWC 1 cut(s) 237
BsiHKCI CYCGRG 2 cut(s) 134, 266
BsiWI CGTACG 2 cut(s) 96, 291
BslI CCNNNNNNNGG 6 cut(s) 163, 361, 378, 399, 439, 491
BsnI GGCC 4 cut(s) 78, 330, 408, 495
BsoBI CYCGRG 2 cut(s) 134, 266
Bsp1286I GDGCHC 1 cut(s) 237
Bsp143I GATC 2 cut(s) 138, 223
BspACI CCGC 6 cut(s) 75, 157, 238, 309, 347, 393
BspANI GGCC 4 cut(s) 78, 330, 408, 495
BspCNI CTCAG 1 cut(s) 316
BspHI TCATGA 1 cut(s) 115
BspLI GGNNCC 1 cut(s) 409
BspMI ACCTGC 1 cut(s) 459
BsrBI CCGCTC 1 cut(s) 395
BsrDI GCAATG 2 cut(s) 475, 513
BssECI CCNNGG 1 cut(s) 435
BssHII GCGCGC 1 cut(s) 343
BssMI GATC 2 cut(s) 138, 223
BssNAI GTATAC 1 cut(s) 428
BssT1I CCWWGG 1 cut(s) 435
Bst1107I GTATAC 1 cut(s) 428
Bst4CI ACNGT 3 cut(s) 113, 377, 467
BstC8I GCNNGC 1 cut(s) 345
BstDEI CTNAG 1 cut(s) 324
BstF5I GGATG 1 cut(s) 261
BstH2I RGCGCY 1 cut(s) 511
BstHHI GCGC 7 cut(s) 75, 286, 309, 345, 347, 456, 510
BstKTI GATC 2 cut(s) 141, 226
BstMBI GATC 2 cut(s) 138, 223
BstMCI CGRYCG 1 cut(s) 379
BstMWI GCNNNNNNNGC 1 cut(s) 315
BstV1I GCAGC 1 cut(s) 232
BstX2I RGATCY 1 cut(s) 223
BstXI CCANNNNNNTGG 1 cut(s) 518
BstYI RGATCY 1 cut(s) 223
BstZ17I GTATAC 1 cut(s) 428
BsuI GTATCC 1 cut(s) 79
BsuRI GGCC 4 cut(s) 78, 330, 408, 495
BtgZI GCGATG 1 cut(s) 265
BtsCI GGATG 1 cut(s) 261
BveI ACCTGC 1 cut(s) 459
Cac8I GCNNGC 1 cut(s) 345
CciI TCATGA 1 cut(s) 115
CfoI GCGC 7 cut(s) 75, 286, 309, 345, 347, 456, 510
Cfr13I GGNCC 4 cut(s) 77, 328, 390, 407
CseI GACGC 1 cut(s) 229
Csp6I GTAC 5 cut(s) 97, 109, 292, 350, 468
CspCI CAANNNNNGTGG 4 cut(s) 188, 223, 320, 355
CviAII CATG 3 cut(s) 29, 106, 116
CviJI RGCY 9 cut(s) 56, 78, 149, 203, 217, 318, 330, 408, 495
CviKI_1 RGCY 9 cut(s) 56, 78, 149, 203, 217, 318, 330, 408, 495
CviQI GTAC 5 cut(s) 97, 109, 292, 350, 468
DdeI CTNAG 1 cut(s) 324
DpnI GATC 2 cut(s) 140, 225
DpnII GATC 2 cut(s) 138, 223
DraIII CACNNNGTG 1 cut(s) 51
EaeI YGGCCR 1 cut(s) 493
Eco130I CCWWGG 1 cut(s) 435
Eco47I GGWCC 1 cut(s) 390
Eco88I CYCGRG 2 cut(s) 134, 266
EcoO109I RGGNCCY 1 cut(s) 407
EcoT14I CCWWGG 1 cut(s) 435
ErhI CCWWGG 1 cut(s) 435
FaeI CATG 3 cut(s) 32, 109, 119
FaiI YATR 8 cut(s) 30, 107, 117, 146, 206, 321, 428, 445
FatI CATG 3 cut(s) 28, 105, 115
FblI GTMKAC 1 cut(s) 427
Fnu4HI GCNGC 2 cut(s) 76, 246
FokI GGATG 1 cut(s) 248
Fsp4HI GCNGC 2 cut(s) 76, 246
GlaI GCGC 7 cut(s) 74, 285, 308, 344, 346, 455, 509
GluI GCNGC 2 cut(s) 76, 246
HaeII RGCGCY 1 cut(s) 511
HaeIII GGCC 4 cut(s) 78, 330, 408, 495
HgaI GACGC 1 cut(s) 229
HhaI GCGC 7 cut(s) 75, 286, 309, 345, 347, 456, 510
Hin1II CATG 3 cut(s) 32, 109, 119
Hin6I GCGC 7 cut(s) 73, 284, 307, 343, 345, 454, 508
HinP1I GCGC 7 cut(s) 73, 284, 307, 343, 345, 454, 508
Hpy166II GTNNAC 1 cut(s) 428
Hpy188III TCNNGA 5 cut(s) 116, 136, 164, 227, 268
Hpy8I GTNNAC 1 cut(s) 428
Hpy99I CGWCG 4 cut(s) 85, 233, 245, 377
HpyAV CCTTC 2 cut(s) 137, 398
HpyCH4III ACNGT 3 cut(s) 113, 377, 467
HpyCH4IV ACGT 1 cut(s) 195
HpyCH4V TGCA 1 cut(s) 480
HpyF10VI GCNNNNNNNGC 1 cut(s) 315
HpyF3I CTNAG 1 cut(s) 324
HpySE526I ACGT 1 cut(s) 195
Hsp92II CATG 3 cut(s) 32, 109, 119
HspAI GCGC 7 cut(s) 73, 284, 307, 343, 345, 454, 508
Kzo9I GATC 2 cut(s) 138, 223
LmnI GCTCC 1 cut(s) 214
LpnPI CCDG 5 cut(s) 10, 149, 197, 464, 504
Lsp1109I GCAGC 1 cut(s) 232
LweI GCATC 3 cut(s) 109, 181, 288
MaeII ACGT 1 cut(s) 195
MaeIII GTNAC 1 cut(s) 301
MalI GATC 2 cut(s) 140, 225
MbiI CCGCTC 1 cut(s) 395
MboI GATC 2 cut(s) 138, 223
MboII GAAGA 1 cut(s) 233
MflI RGATCY 1 cut(s) 223
MhlI GDGCHC 1 cut(s) 237
MnlI CCTC 6 cut(s) 25, 143, 181, 275, 319, 512
MseI TTAA 1 cut(s) 489
MwoI GCNNNNNNNGC 1 cut(s) 315
NdeII GATC 2 cut(s) 138, 223
NlaIII CATG 3 cut(s) 32, 109, 119
NlaIV GGNNCC 1 cut(s) 409
NmuCI GTSAC 1 cut(s) 301
PaeR7I CTCGAG 2 cut(s) 134, 266
PagI TCATGA 1 cut(s) 115
PaqCI CACCTGC 1 cut(s) 459
PauI GCGCGC 1 cut(s) 343
PcsI WCGNNNNNNNCGW 2 cut(s) 237, 283
Pfl23II CGTACG 2 cut(s) 96, 291
PkrI GCNGC 2 cut(s) 77, 247
PshBI ATTAAT 1 cut(s) 489
PspLI CGTACG 2 cut(s) 96, 291
PspN4I GGNNCC 1 cut(s) 409
PspPI GGNCC 4 cut(s) 77, 328, 390, 407
PsuI RGATCY 1 cut(s) 223
PteI GCGCGC 1 cut(s) 343
RsaI GTAC 5 cut(s) 98, 110, 293, 351, 469
RsaNI GTAC 5 cut(s) 97, 109, 292, 350, 468
SaqAI TTAA 1 cut(s) 489
SatI GCNGC 2 cut(s) 76, 246
Sau3AI GATC 2 cut(s) 138, 223
Sau96I GGNCC 4 cut(s) 77, 328, 390, 407
SduI GDGCHC 1 cut(s) 237
SetI ASST 7 cut(s) 50, 151, 198, 205, 219, 320, 453
SfaNI GCATC 3 cut(s) 109, 181, 288
Sfr274I CTCGAG 2 cut(s) 134, 266
SinI GGWCC 1 cut(s) 390
SlaI CTCGAG 2 cut(s) 134, 266
SmlI CTYRAG 3 cut(s) 134, 266, 503
SmoI CTYRAG 3 cut(s) 134, 266, 503
SsiI CCGC 6 cut(s) 75, 157, 238, 309, 347, 393
StyI CCWWGG 1 cut(s) 435
TaaI ACNGT 3 cut(s) 113, 377, 467
TaiI ACGT 1 cut(s) 198
TaqI TCGA 4 cut(s) 135, 228, 267, 397
TauI GCSGC 1 cut(s) 78
Tru1I TTAA 1 cut(s) 489
Tru9I TTAA 1 cut(s) 489
TseFI GTSAC 1 cut(s) 301
TseI GCWGC 1 cut(s) 245
Tsp45I GTSAC 1 cut(s) 301
TspDTI ATGAA 2 cut(s) 410, 464
TspGWI ACGGA 1 cut(s) 98
VpaK11BI GGWCC 1 cut(s) 390
VspI ATTAAT 1 cut(s) 489
XhoI CTCGAG 2 cut(s) 134, 266
XmiI GTMKAC 1 cut(s) 427
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.