Rw1G004280

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000160
Physical Location & Seq
Reverse (-)
7989417 .. 7989800
384 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G004280.1

Sequence Viewer

Length: 384 bp
ATGCAAAACAATCTCACAGCCGACGAATATAGTCAGGCAATGTTGCAAGAACTAGAGGATCTTGACCAGGCGCGGTTGGATGCATATGATCGGCTTCAAGCTCAAAAGAAGGCTGTCGCTCGTGCTTACAATAAAAAGACCAAATACAAGAGTTTTGGCGAAAGCGAGTTGGTTTGGAAAGCAGTGTTACCCATCGGCACAAAGGATCCCATATTTGGAAAATGGTCACCAAATTGGGAGGGTCCATTTATTATTGACAAAGTTCTCGGCAAAGGAGCATATCATTTGCGAGATAAAGACGGCGAACGACACGCAATGCCTATTAATGGCCAATACCTAAAGAAATATTATCCCAGAATGTGGGAAGCGCGAGCTGCTGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

127

Amino Acids

14.75

Weight (kDa)

9.0

Isoelectric Point (pI)

30.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000160)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11612 FvH4_2g25851 FvH4_3g22802 FvH4_3g22805 FvH4_3g31361 FvH4_3g31382 FvH4_4g05272 FvH4_4g05273 FvH4_4g14567 FvH4_4g15161 FvH4_5g22540 FvH4_6g13113 FvH4_6g31923 FvH4_6g31924 FvH4_6g33651 FvH4_6g45122 FvH4_7g03662
pyrus_communis pycom01g04240 pycom01g24010 pycom02g18210 pycom02g19420 pycom05g06510 pycom09g15750 pycom09g18940 pycom12g02580 pycom12g03100 pycom12g08310 pycom13g22710 pycom13g28060 pycom16g18340 pycom16g18350 pycom16g24880 pycom16g26240 pycom461g00260 pycom520g00980 pycom520g01320
rosa_chinensis RchiOBHm_Chr1g0320731 RchiOBHm_Chr2g0102771 RchiOBHm_Chr3g0462151 RchiOBHm_Chr5g0038141 RchiOBHm_Chr5g0069371 RchiOBHm_Chr7g0239101
rosa_multiflora Rmu_co8038252.1_g000001 Rmu_co8138412.1_g000001 Rmu_co8331087.1_g000001 Rmu_co8479311.1_g000001 Rmu_sc0000112.1_g000018 Rmu_sc0000346.1_g000012 Rmu_sc0002102.1_g000002 Rmu_sc0003505.1_g000013 Rmu_sc0004249.1_g000007 Rmu_sc0004448.1_g000010 Rmu_sc0004594.1_g000011 Rmu_sc0004915.1_g000010 Rmu_sc0008019.1_g000019 Rmu_sc0008303.1_g000001 Rmu_sc0008355.1_g000005 Rmu_sc0009253.1_g000018 Rmu_sc0010211.1_g000002 Rmu_sc0010252.1_g000009 Rmu_sc0011534.1_g000008 Rmu_sc0014811.1_g000009 Rmu_sc0019475.1_g000001 Rmu_sc0024897.1_g000001 Rmu_sc0024898.1_g000001 Rmu_sc0031791.1_g000001 Rmu_sc0038715.1_g000001
rosa_roxburghii Rroxscaffold_165G00436940 Rroxscaffold_174G00435270 Rroxscaffold_177G00434330 Rroxscaffold_177G00434340 Rroxscaffold_177G00434350 Rroxscaffold_1G00002160 Rroxscaffold_1G00025260 Rroxscaffold_1G00042950 Rroxscaffold_1G00068010 Rroxscaffold_2G00107530 Rroxscaffold_3G00221190 Rroxscaffold_3G00221520 Rroxscaffold_3G00223200 Rroxscaffold_4G00322230 Rroxscaffold_4G00331810 Rroxscaffold_5G00385150 Rroxscaffold_5G00387510 Rroxscaffold_6G00410520 Rroxscaffold_6G00423360 Rroxscaffold_6G00423370 Rroxscaffold_6G00429210 Rroxscaffold_7G00158300 Rroxscaffold_7G00163480 Rroxscaffold_7G00171410 Rroxscaffold_7G00178940 Rroxscaffold_7G00199480 Rroxscaffold_7G00205630 Rroxscaffold_7G00207440
rosa_rugosa Rorug01G0056400 Rorug04G0063900 Rorug05G0251400 Rorug07G0221900
rosa_samantha Rh1DG169400 Rh2AG292900 Rh2DG519200 Rh4DG260600 Rh5AG042600 Rh6BG117500
rosa_wichuraiana Rw0G001900 Rw0G005150 Rw0G006380 Rw0G015140 Rw0G016320 Rw0G019440 Rw0G019840 Rw0G023740 Rw1G001590 Rw1G002180 Rw1G003560 Rw1G004280 Rw1G006110 Rw1G006680 Rw1G007920 Rw1G008480 Rw1G009120 Rw1G010310 Rw1G014900 Rw1G019650 Rw1G022070 Rw1G022170 Rw1G041570 Rw2G002740 Rw2G005760 Rw2G032370 Rw2G046770 Rw2G050600 Rw2G051420 Rw3G015930 Rw3G016280 Rw3G019580 Rw3G028420 Rw4G003430 Rw4G005350 Rw4G007530 Rw4G008150 Rw4G009580 Rw4G010250 Rw4G015800 Rw4G017000 Rw4G017910 Rw4G018510 Rw4G019700 Rw4G031010 Rw5G012650 Rw5G020140 Rw5G022060 Rw5G034420 Rw5G035560 Rw5G043010 Rw5G046750 Rw5G047340 Rw5G049500 Rw6G001390 Rw6G002210 Rw6G004530 Rw6G004770 Rw6G005100 Rw6G005890 Rw6G011860 Rw6G014680 Rw6G019480 Rw6G028970 Rw6G033800 Rw7G013050 Rw7G014800 Rw7G025760 Rw7G025850 Rw7G026730 Rw7G026870 Rw7G036330 Rw7G036430 Rw7G039320 Rw7G039510 Rw7G039560 Rw7G041370 Rw7G042050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 360
AccII CGCG 2 cut(s) 73, 370
AciI CCGC 1 cut(s) 73
AclWI GGATC 3 cut(s) 66, 200, 213
AcoI YGGCCR 1 cut(s) 328
AfiI CCNNNNNNNGG 3 cut(s) 215, 326, 360
AgsI TTSAA 1 cut(s) 98
AjnI CCWGG 1 cut(s) 66
AluBI AGCT 2 cut(s) 101, 374
AluI AGCT 2 cut(s) 101, 374
AlwI GGATC 3 cut(s) 66, 200, 213
AoxI GGCC 1 cut(s) 328
ApeKI GCWGC 1 cut(s) 374
AseI ATTAAT 1 cut(s) 324
AspLEI GCGC 2 cut(s) 73, 370
AspS9I GGNCC 1 cut(s) 242
AsuHPI GGTGA 1 cut(s) 219
AvaII GGWCC 1 cut(s) 242
BalI TGGCCA 1 cut(s) 330
BamHI GGATCC 1 cut(s) 205
BauI CACGAG 1 cut(s) 120
BbvI GCAGC 1 cut(s) 361
BccI CCATC 1 cut(s) 200
BceAI ACGGC 1 cut(s) 316
BciT130I CCWGG 1 cut(s) 68
BfaI CTAG 1 cut(s) 53
BisI GCNGC 1 cut(s) 375
BlsI GCNGC 1 cut(s) 376
Bme1390I CCNGG 1 cut(s) 68
Bme18I GGWCC 1 cut(s) 242
BmgT120I GGNCC 1 cut(s) 242
BmiI GGNNCC 2 cut(s) 207, 243
BmrFI CCNGG 1 cut(s) 68
BmsI GCATC 1 cut(s) 70
Bsc4I CCNNNNNNNGG 3 cut(s) 215, 326, 360
Bse3DI GCAATG 2 cut(s) 45, 321
BseBI CCWGG 1 cut(s) 68
BseGI GGATG 1 cut(s) 85
BseLI CCNNNNNNNGG 3 cut(s) 215, 326, 360
BseMI GCAATG 2 cut(s) 45, 321
BseXI GCAGC 1 cut(s) 361
Bsh1236I CGCG 2 cut(s) 73, 370
BshFI GGCC 1 cut(s) 330
BslI CCNNNNNNNGG 3 cut(s) 215, 326, 360
BsnI GGCC 1 cut(s) 330
Bsp143I GATC 3 cut(s) 58, 88, 205
BspACI CCGC 1 cut(s) 73
BspANI GGCC 1 cut(s) 330
BspFNI CGCG 2 cut(s) 73, 370
BspLI GGNNCC 2 cut(s) 207, 243
BspPI GGATC 3 cut(s) 66, 200, 213
BsrDI GCAATG 2 cut(s) 45, 321
BssMI GATC 3 cut(s) 58, 88, 205
BssSI CACGAG 1 cut(s) 120
Bst2BI CACGAG 1 cut(s) 120
Bst2UI CCWGG 1 cut(s) 68
BstC8I GCNNGC 1 cut(s) 372
BstEII GGTNACC 1 cut(s) 225
BstF5I GGATG 1 cut(s) 85
BstFNI CGCG 2 cut(s) 73, 370
BstHHI GCGC 2 cut(s) 73, 370
BstKTI GATC 3 cut(s) 61, 91, 208
BstMBI GATC 3 cut(s) 58, 88, 205
BstMWI GCNNNNNNNGC 1 cut(s) 374
BstNI CCWGG 1 cut(s) 68
BstPI GGTNACC 1 cut(s) 225
BstSCI CCNGG 1 cut(s) 66
BstUI CGCG 2 cut(s) 73, 370
BstV1I GCAGC 1 cut(s) 361
BstX2I RGATCY 2 cut(s) 58, 205
BstYI RGATCY 2 cut(s) 58, 205
BsuRI GGCC 1 cut(s) 330
BtsCI GGATG 1 cut(s) 85
BtsI GCAGTG 1 cut(s) 189
BtsIMutI CAGTG 1 cut(s) 189
Cac8I GCNNGC 1 cut(s) 372
CfoI GCGC 2 cut(s) 73, 370
Cfr13I GGNCC 1 cut(s) 242
CviJI RGCY 6 cut(s) 20, 94, 101, 113, 330, 374
CviKI_1 RGCY 6 cut(s) 20, 94, 101, 113, 330, 374
DpnI GATC 3 cut(s) 60, 90, 207
DpnII GATC 3 cut(s) 58, 88, 205
EaeI YGGCCR 1 cut(s) 328
Eco47I GGWCC 1 cut(s) 242
Eco91I GGTNACC 1 cut(s) 225
EcoO65I GGTNACC 1 cut(s) 225
EcoRII CCWGG 1 cut(s) 66
EcoT22I ATGCAT 1 cut(s) 85
FaiI YATR 5 cut(s) 30, 85, 87, 212, 280
FauNDI CATATG 1 cut(s) 85
Fnu4HI GCNGC 1 cut(s) 375
FokI GGATG 1 cut(s) 92
Fsp4HI GCNGC 1 cut(s) 375
FspBI CTAG 1 cut(s) 53
GlaI GCGC 2 cut(s) 72, 369
GluI GCNGC 1 cut(s) 375
HaeIII GGCC 1 cut(s) 330
HhaI GCGC 2 cut(s) 73, 370
Hin6I GCGC 2 cut(s) 71, 368
HinP1I GCGC 2 cut(s) 71, 368
HphI GGTGA 1 cut(s) 219
Hpy188III TCNNGA 1 cut(s) 62
Hpy99I CGWCG 1 cut(s) 26
HpyAV CCTTC 1 cut(s) 103
HpyCH4V TGCA 3 cut(s) 4, 46, 83
HpyF10VI GCNNNNNNNGC 1 cut(s) 374
HspAI GCGC 2 cut(s) 71, 368
Kzo9I GATC 3 cut(s) 58, 88, 205
LmnI GCTCC 1 cut(s) 275
LpnPI CCDG 4 cut(s) 20, 53, 80, 367
Lsp1109I GCAGC 1 cut(s) 361
LweI GCATC 1 cut(s) 70
MaeI CTAG 1 cut(s) 53
MaeIII GTNAC 2 cut(s) 186, 225
MalI GATC 3 cut(s) 60, 90, 207
MboI GATC 3 cut(s) 58, 88, 205
MflI RGATCY 2 cut(s) 58, 205
MlsI TGGCCA 1 cut(s) 330
MluCI AATT 1 cut(s) 232
MluNI TGGCCA 1 cut(s) 330
MmeI TCCRAC 1 cut(s) 57
MnlI CCTC 2 cut(s) 49, 232
Mox20I TGGCCA 1 cut(s) 330
Mph1103I ATGCAT 1 cut(s) 85
MscI TGGCCA 1 cut(s) 330
MseI TTAA 1 cut(s) 324
Msp20I TGGCCA 1 cut(s) 330
MspR9I CCNGG 1 cut(s) 68
MvaI CCWGG 1 cut(s) 68
MvnI CGCG 2 cut(s) 73, 370
MwoI GCNNNNNNNGC 1 cut(s) 374
NdeI CATATG 1 cut(s) 85
NdeII GATC 3 cut(s) 58, 88, 205
NlaIV GGNNCC 2 cut(s) 207, 243
NmeAIII GCCGAG 1 cut(s) 246
NmuCI GTSAC 1 cut(s) 225
NsiI ATGCAT 1 cut(s) 85
PflMI CCANNNNNTGG 1 cut(s) 360
PkrI GCNGC 1 cut(s) 376
PshBI ATTAAT 1 cut(s) 324
Psp6I CCWGG 1 cut(s) 66
PspEI GGTNACC 1 cut(s) 225
PspGI CCWGG 1 cut(s) 66
PspN4I GGNNCC 2 cut(s) 207, 243
PspPI GGNCC 1 cut(s) 242
PsuI RGATCY 2 cut(s) 58, 205
SaqAI TTAA 1 cut(s) 324
SatI GCNGC 1 cut(s) 375
Sau3AI GATC 3 cut(s) 58, 88, 205
Sau96I GGNCC 1 cut(s) 242
ScrFI CCNGG 1 cut(s) 68
SetI ASST 3 cut(s) 103, 339, 376
SfaNI GCATC 1 cut(s) 70
SinI GGWCC 1 cut(s) 242
Sse9I AATT 1 cut(s) 232
SsiI CCGC 1 cut(s) 73
SspI AATATT 1 cut(s) 347
SspMI CTAG 1 cut(s) 53
StyD4I CCNGG 1 cut(s) 66
TasI AATT 1 cut(s) 232
Tru1I TTAA 1 cut(s) 324
Tru9I TTAA 1 cut(s) 324
TscAI CASTG 1 cut(s) 189
TseFI GTSAC 1 cut(s) 225
TseI GCWGC 1 cut(s) 374
Tsp45I GTSAC 1 cut(s) 225
TspRI CASTG 1 cut(s) 189
Van91I CCANNNNNTGG 1 cut(s) 360
VpaK11BI GGWCC 1 cut(s) 242
VspI ATTAAT 1 cut(s) 324
XspI CTAG 1 cut(s) 53
Zsp2I ATGCAT 1 cut(s) 85
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.