Uncharacterized protein K02A2.6-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_1 | PF00078 | 869 - 975 | 3e-23 | Reverse transcriptase (RNA-dependent DNA polymerase) |
| RT_RNaseH_2 | PF17919 | 1039 - 1137 | 2.3e-24 | RNase H-like domain found in reverse transcriptase |
| RT_RNaseH | PF17917 | 1067 - 1168 | 7.7e-25 | RNase H-like domain found in reverse transcriptase |
| RNase_H | PF00075 | 1216 - 1339 | 1e-05 | RNase H |
| RVT_3 | PF13456 | 1219 - 1338 | 1.6e-20 | Reverse transcriptase-like |
| Integrase_H2C2 | PF17921 | 1438 - 1492 | 3.8e-07 | Integrase zinc binding domain |
| rve | PF00665 | 1519 - 1595 | 2.9e-11 | Integrase core domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 161 |
| AatII | GACGTC | 2 cut(s) | 727, 3105 |
| Acc16I | TGCGCA | 2 cut(s) | 180, 2887 |
| Acc36I | ACCTGC | 4 cut(s) | 3612, 3823, 4340, 4687 |
| Acc65I | GGTACC | 1 cut(s) | 2931 |
| AccB1I | GGYRCC | 6 cut(s) | 469, 2620, 2931, 3184, 4147, 5126 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2050 |
| AccBSI | CCGCTC | 3 cut(s) | 353, 1096, 3371 |
| AccI | GTMKAC | 4 cut(s) | 1288, 2667, 2778, 4950 |
| AccII | CGCG | 2 cut(s) | 138, 1989 |
| AccIII | TCCGGA | 4 cut(s) | 359, 2580, 2850, 4647 |
| AclI | AACGTT | 3 cut(s) | 684, 2488, 3765 |
| AcoI | YGGCCR | 3 cut(s) | 309, 3961, 4418 |
| AcsI | RAATTY | 7 cut(s) | 84, 213, 488, 1427, 1742, 2225, 2995 |
| AcuI | CTGAAG | 5 cut(s) | 2568, 2725, 4617, 4631, 4980 |
| AcvI | CACGTG | 1 cut(s) | 1946 |
| AcyI | GRCGYC | 3 cut(s) | 724, 2357, 3102 |
| AdeI | CACNNNGTG | 1 cut(s) | 3574 |
| AfeI | AGCGCT | 1 cut(s) | 2006 |
| AflII | CTTAAG | 1 cut(s) | 388 |
| AflIII | ACRYGT | 6 cut(s) | 136, 811, 900, 1873, 1945, 3516 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 5084, 5252 |
| AjnI | CCWGG | 9 cut(s) | 147, 199, 616, 1158, 1621, 1714, 1840, 2414, 2434 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 3942, 3974 |
| AleI | CACNNNNGTG | 1 cut(s) | 2123 |
| Alw21I | GWGCWC | 7 cut(s) | 418, 2350, 2529, 2640, 2814, 4366, 4934 |
| Alw44I | GTGCAC | 1 cut(s) | 4930 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 623, 1799, 4574 |
| Ama87I | CYCGRG | 3 cut(s) | 575, 3227, 4452 |
| Aor13HI | TCCGGA | 4 cut(s) | 359, 2580, 2850, 4647 |
| Aor51HI | AGCGCT | 1 cut(s) | 2006 |
| ApaLI | GTGCAC | 1 cut(s) | 4930 |
| ApeKI | GCWGC | 6 cut(s) | 104, 1462, 3563, 3646, 4388, 4568 |
| ApoI | RAATTY | 7 cut(s) | 84, 213, 488, 1427, 1742, 2225, 2995 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 3092, 3124 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 4602 |
| Asp718I | GGTACC | 1 cut(s) | 2931 |
| AspA2I | CCTAGG | 1 cut(s) | 1966 |
| AspLEI | GCGC | 4 cut(s) | 181, 1773, 2007, 2888 |
| AsuII | TTCGAA | 2 cut(s) | 3758, 4134 |
| AvaI | CYCGRG | 3 cut(s) | 575, 3227, 4452 |
| AvaII | GGWCC | 8 cut(s) | 74, 345, 2323, 4278, 4376, 4729, 5086, 5246 |
| AvrII | CCTAGG | 1 cut(s) | 1966 |
| AxyI | CCTNAGG | 4 cut(s) | 498, 1494, 4298, 4884 |
| BaeGI | GKGCMC | 2 cut(s) | 1196, 4934 |
| BalI | TGGCCA | 2 cut(s) | 311, 3963 |
| BamHI | GGATCC | 1 cut(s) | 1056 |
| BanI | GGYRCC | 6 cut(s) | 469, 2620, 2931, 3184, 4147, 5126 |
| BanII | GRGCYC | 5 cut(s) | 896, 1939, 2529, 2640, 4366 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 1899, 1931, 4953, 4985 |
| BbrPI | CACGTG | 1 cut(s) | 1946 |
| BbsI | GAAGAC | 5 cut(s) | 308, 2211, 2634, 3606, 5260 |
| Bbv12I | GWGCWC | 7 cut(s) | 418, 2350, 2529, 2640, 2814, 4366, 4934 |
| BbvCI | CCTCAGC | 2 cut(s) | 863, 2319 |
| BbvI | GCAGC | 6 cut(s) | 91, 1474, 3575, 3658, 4400, 4580 |
| BceAI | ACGGC | 1 cut(s) | 367 |
| BciT130I | CCWGG | 9 cut(s) | 149, 201, 618, 1160, 1623, 1716, 1842, 2416, 2436 |
| BciVI | GTATCC | 2 cut(s) | 1157, 4284 |
| BclI | TGATCA | 2 cut(s) | 1702, 3786 |
| BfaI | CTAG | 9 cut(s) | 1967, 2991, 3669, 3809, 4001, 4200, 4209, 4565, 4976 |
| BfmI | CTRYAG | 3 cut(s) | 2377, 4785, 4900 |
| BfoI | RGCGCY | 1 cut(s) | 2008 |
| BfrI | CTTAAG | 1 cut(s) | 388 |
| BfuAI | ACCTGC | 4 cut(s) | 3612, 3823, 4340, 4687 |
| BfuI | GTATCC | 2 cut(s) | 1157, 4284 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 4156, 4463 |
| BglII | AGATCT | 1 cut(s) | 2381 |
| BlnI | CCTAGG | 1 cut(s) | 1966 |
| BlpI | GCTNAGC | 1 cut(s) | 3352 |
| BmcAI | AGTACT | 1 cut(s) | 1278 |
| Bme1390I | CCNGG | 9 cut(s) | 149, 201, 618, 1160, 1623, 1716, 1842, 2416, 2436 |
| Bme18I | GGWCC | 8 cut(s) | 74, 345, 2323, 4278, 4376, 4729, 5086, 5246 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 5084, 5252 |
| BmeT110I | CYCGRG | 3 cut(s) | 575, 3227, 4452 |
| BmrFI | CCNGG | 9 cut(s) | 149, 201, 618, 1160, 1623, 1716, 1842, 2416, 2436 |
| BpiI | GAAGAC | 5 cut(s) | 308, 2211, 2634, 3606, 5260 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 3608, 3640 |
| BpmI | CTGGAG | 3 cut(s) | 2205, 3156, 4065 |
| Bpu10I | CCTNAGC | 3 cut(s) | 863, 1829, 2319 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 3352 |
| Bpu14I | TTCGAA | 2 cut(s) | 3758, 4134 |
| BpuEI | CTTGAG | 8 cut(s) | 566, 1082, 1841, 2848, 3149, 3818, 4092, 4311 |
| BsaAI | YACGTR | 2 cut(s) | 1946, 3517 |
| BsaHI | GRCGYC | 3 cut(s) | 724, 2357, 3102 |
| BsaI | GGTCTC | 1 cut(s) | 4852 |
| BsaWI | WCCGGW | 6 cut(s) | 359, 739, 1053, 2580, 2850, 4647 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1281, 1311, 5160, 5190 |
| Bse1I | ACTGG | 6 cut(s) | 312, 3033, 3173, 4082, 4421, 4984 |
| Bse21I | CCTNAGG | 4 cut(s) | 498, 1494, 4298, 4884 |
| Bse3DI | GCAATG | 2 cut(s) | 842, 3245 |
| BseAI | TCCGGA | 4 cut(s) | 359, 2580, 2850, 4647 |
| BseBI | CCWGG | 9 cut(s) | 149, 201, 618, 1160, 1623, 1716, 1842, 2416, 2436 |
| BseMI | GCAATG | 2 cut(s) | 842, 3245 |
| BseNI | ACTGG | 6 cut(s) | 312, 3033, 3173, 4082, 4421, 4984 |
| BseRI | GAGGAG | 6 cut(s) | 2378, 2845, 2976, 3152, 3693, 4157 |
| BseSI | GKGCMC | 2 cut(s) | 1196, 4934 |
| BseXI | GCAGC | 6 cut(s) | 91, 1474, 3575, 3658, 4400, 4580 |
| BseYI | CCCAGC | 2 cut(s) | 817, 2241 |
| Bsh1236I | CGCG | 2 cut(s) | 138, 1989 |
| BshNI | GGYRCC | 6 cut(s) | 469, 2620, 2931, 3184, 4147, 5126 |
| BsiHKAI | GWGCWC | 7 cut(s) | 418, 2350, 2529, 2640, 2814, 4366, 4934 |
| BsiHKCI | CYCGRG | 3 cut(s) | 575, 3227, 4452 |
| BsiSI | CCGG | 8 cut(s) | 360, 740, 1054, 2156, 2581, 2851, 3608, 4648 |
| BslFI | GGGAC | 7 cut(s) | 800, 1123, 1984, 2326, 3089, 4352, 5259 |
| BsmBI | CGTCTC | 1 cut(s) | 39 |
| BsmFI | GGGAC | 7 cut(s) | 800, 1123, 1984, 2326, 3089, 4352, 5259 |
| BsmI | GAATGC | 3 cut(s) | 612, 2707, 4763 |
| Bso31I | GGTCTC | 1 cut(s) | 4852 |
| BsoBI | CYCGRG | 3 cut(s) | 575, 3227, 4452 |
| Bsp119I | TTCGAA | 2 cut(s) | 3758, 4134 |
| Bsp13I | TCCGGA | 4 cut(s) | 359, 2580, 2850, 4647 |
| Bsp1407I | TGTACA | 2 cut(s) | 903, 4269 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 3352 |
| Bsp19I | CCATGG | 2 cut(s) | 1188, 3913 |
| BspEI | TCCGGA | 4 cut(s) | 359, 2580, 2850, 4647 |
| BspFNI | CGCG | 2 cut(s) | 138, 1989 |
| BspHI | TCATGA | 2 cut(s) | 1668, 1927 |
| BspMI | ACCTGC | 4 cut(s) | 3612, 3823, 4340, 4687 |
| BspQI | GCTCTTC | 2 cut(s) | 2628, 3913 |
| BspT104I | TTCGAA | 2 cut(s) | 3758, 4134 |
| BspT107I | GGYRCC | 6 cut(s) | 469, 2620, 2931, 3184, 4147, 5126 |
| BspTI | CTTAAG | 1 cut(s) | 388 |
| BspTNI | GGTCTC | 1 cut(s) | 4852 |
| BsrBI | CCGCTC | 3 cut(s) | 353, 1096, 3371 |
| BsrDI | GCAATG | 2 cut(s) | 842, 3245 |
| BsrGI | TGTACA | 2 cut(s) | 903, 4269 |
| BsrI | ACTGG | 6 cut(s) | 312, 3033, 3173, 4082, 4421, 4984 |
| BssNAI | GTATAC | 2 cut(s) | 2668, 4951 |
| BssNI | GRCGYC | 3 cut(s) | 724, 2357, 3102 |
| BssT1I | CCWWGG | 9 cut(s) | 77, 464, 1188, 1292, 1966, 2308, 2914, 3357, 3913 |
| Bst1107I | GTATAC | 2 cut(s) | 2668, 4951 |
| Bst2UI | CCWGG | 9 cut(s) | 149, 201, 618, 1160, 1623, 1716, 1842, 2416, 2436 |
| Bst6I | CTCTTC | 9 cut(s) | 404, 441, 906, 969, 1695, 2628, 3609, 3913, 4311 |
| BstACI | GRCGYC | 3 cut(s) | 724, 2357, 3102 |
| BstAFI | CTTAAG | 1 cut(s) | 388 |
| BstAPI | GCANNNNNTGC | 4 cut(s) | 3251, 4467, 4769, 5120 |
| BstAUI | TGTACA | 2 cut(s) | 903, 4269 |
| BstBAI | YACGTR | 2 cut(s) | 1946, 3517 |
| BstBI | TTCGAA | 2 cut(s) | 3758, 4134 |
| BstDSI | CCRYGG | 2 cut(s) | 1188, 3913 |
| BstENI | CCTNNNNNAGG | 3 cut(s) | 2719, 3192, 4883 |
| BstFNI | CGCG | 2 cut(s) | 138, 1989 |
| BstH2I | RGCGCY | 1 cut(s) | 2008 |
| BstHHI | GCGC | 4 cut(s) | 181, 1773, 2007, 2888 |
| BstNI | CCWGG | 9 cut(s) | 149, 201, 618, 1160, 1623, 1716, 1842, 2416, 2436 |
| BstSCI | CCNGG | 9 cut(s) | 147, 199, 616, 1158, 1621, 1714, 1840, 2414, 2434 |
| BstSFI | CTRYAG | 3 cut(s) | 2377, 4785, 4900 |
| BstSLI | GKGCMC | 2 cut(s) | 1196, 4934 |
| BstUI | CGCG | 2 cut(s) | 138, 1989 |
| BstV1I | GCAGC | 6 cut(s) | 91, 1474, 3575, 3658, 4400, 4580 |
| BstV2I | GAAGAC | 5 cut(s) | 308, 2211, 2634, 3606, 5260 |
| BstX2I | RGATCY | 7 cut(s) | 432, 979, 992, 1056, 2381, 2443, 4980 |
| BstXI | CCANNNNNNTGG | 5 cut(s) | 1307, 2604, 3114, 3472, 4478 |
| BstYI | RGATCY | 7 cut(s) | 432, 979, 992, 1056, 2381, 2443, 4980 |
| BstZ17I | GTATAC | 2 cut(s) | 2668, 4951 |
| Bsu36I | CCTNAGG | 4 cut(s) | 498, 1494, 4298, 4884 |
| BsuI | GTATCC | 2 cut(s) | 1157, 4284 |
| BtgI | CCRYGG | 2 cut(s) | 1188, 3913 |
| BtsI | GCAGTG | 1 cut(s) | 4971 |
| BveI | ACCTGC | 4 cut(s) | 3612, 3823, 4340, 4687 |
| CaiI | CAGNNNCTG | 3 cut(s) | 623, 1799, 4574 |
| CciI | TCATGA | 2 cut(s) | 1668, 1927 |
| CfoI | GCGC | 4 cut(s) | 181, 1773, 2007, 2888 |
| CseI | GACGC | 8 cut(s) | 127, 848, 1244, 2365, 2520, 2576, 3477, 4004 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1726, 1761 |
| DraI | TTTAAA | 3 cut(s) | 1273, 1396, 2697 |
| DraIII | CACNNNGTG | 1 cut(s) | 3574 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 161 |
| DriI | GACNNNNNGTC | 2 cut(s) | 5084, 5252 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 161 |
| EaeI | YGGCCR | 3 cut(s) | 309, 3961, 4418 |
| Eam1104I | CTCTTC | 9 cut(s) | 404, 441, 906, 969, 1695, 2628, 3609, 3913, 4311 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 5084, 5252 |
| EarI | CTCTTC | 9 cut(s) | 404, 441, 906, 969, 1695, 2628, 3609, 3913, 4311 |
| EciI | GGCGGA | 1 cut(s) | 337 |
| Ecl136II | GAGCTC | 3 cut(s) | 2527, 2638, 4364 |
| Eco130I | CCWWGG | 9 cut(s) | 77, 464, 1188, 1292, 1966, 2308, 2914, 3357, 3913 |
| Eco147I | AGGCCT | 1 cut(s) | 5194 |
| Eco24I | GRGCYC | 5 cut(s) | 896, 1939, 2529, 2640, 4366 |
| Eco31I | GGTCTC | 1 cut(s) | 4852 |
| Eco32I | GATATC | 1 cut(s) | 3508 |
| Eco47I | GGWCC | 8 cut(s) | 74, 345, 2323, 4278, 4376, 4729, 5086, 5246 |
| Eco47III | AGCGCT | 1 cut(s) | 2006 |
| Eco53kI | GAGCTC | 3 cut(s) | 2527, 2638, 4364 |
| Eco57I | CTGAAG | 5 cut(s) | 2568, 2725, 4617, 4631, 4980 |
| Eco72I | CACGTG | 1 cut(s) | 1946 |
| Eco81I | CCTNAGG | 4 cut(s) | 498, 1494, 4298, 4884 |
| Eco88I | CYCGRG | 3 cut(s) | 575, 3227, 4452 |
| EcoICRI | GAGCTC | 3 cut(s) | 2527, 2638, 4364 |
| EcoNI | CCTNNNNNAGG | 3 cut(s) | 2719, 3192, 4883 |
| EcoO109I | RGGNCCY | 3 cut(s) | 2323, 4278, 5246 |
| EcoRI | GAATTC | 1 cut(s) | 2225 |
| EcoRII | CCWGG | 9 cut(s) | 147, 199, 616, 1158, 1621, 1714, 1840, 2414, 2434 |
| EcoRV | GATATC | 1 cut(s) | 3508 |
| EcoT14I | CCWWGG | 9 cut(s) | 77, 464, 1188, 1292, 1966, 2308, 2914, 3357, 3913 |
| EcoT22I | ATGCAT | 1 cut(s) | 4765 |
| EcoT38I | GRGCYC | 5 cut(s) | 896, 1939, 2529, 2640, 4366 |
| ErhI | CCWWGG | 9 cut(s) | 77, 464, 1188, 1292, 1966, 2308, 2914, 3357, 3913 |
| Esp3I | CGTCTC | 1 cut(s) | 39 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 528, 560, 3335, 3367 |
| FaqI | GGGAC | 7 cut(s) | 800, 1123, 1984, 2326, 3089, 4352, 5259 |
| FauI | CCCGC | 1 cut(s) | 1994 |
| FauNDI | CATATG | 1 cut(s) | 1306 |
| FbaI | TGATCA | 2 cut(s) | 1702, 3786 |
| FblI | GTMKAC | 4 cut(s) | 1288, 2667, 2778, 4950 |
| FriOI | GRGCYC | 5 cut(s) | 896, 1939, 2529, 2640, 4366 |
| FspAI | RTGCGCAY | 2 cut(s) | 180, 2887 |
| FspBI | CTAG | 9 cut(s) | 1967, 2991, 3669, 3809, 4001, 4200, 4209, 4565, 4976 |
| FspI | TGCGCA | 2 cut(s) | 180, 2887 |
| GlaI | GCGC | 4 cut(s) | 180, 1772, 2006, 2887 |
| GsaI | CCCAGC | 2 cut(s) | 821, 2245 |
| GsuI | CTGGAG | 3 cut(s) | 2205, 3156, 4065 |
| HaeII | RGCGCY | 1 cut(s) | 2008 |
| HapII | CCGG | 8 cut(s) | 360, 740, 1054, 2156, 2581, 2851, 3608, 4648 |
| HgaI | GACGC | 8 cut(s) | 127, 848, 1244, 2365, 2520, 2576, 3477, 4004 |
| HhaI | GCGC | 4 cut(s) | 181, 1773, 2007, 2888 |
| Hin1I | GRCGYC | 3 cut(s) | 724, 2357, 3102 |
| Hin6I | GCGC | 4 cut(s) | 179, 1771, 2005, 2886 |
| HinP1I | GCGC | 4 cut(s) | 179, 1771, 2005, 2886 |
| HincII | GTYRAC | 6 cut(s) | 1152, 1289, 2355, 2554, 2779, 2824 |
| HindII | GTYRAC | 6 cut(s) | 1152, 1289, 2355, 2554, 2779, 2824 |
| HindIII | AAGCTT | 3 cut(s) | 882, 1436, 4639 |
| HpaII | CCGG | 8 cut(s) | 360, 740, 1054, 2156, 2581, 2851, 3608, 4648 |
| Hpy99I | CGWCG | 8 cut(s) | 143, 703, 726, 1048, 2514, 2780, 2783, 4071 |
| Hsp92I | GRCGYC | 3 cut(s) | 724, 2357, 3102 |
| HspAI | GCGC | 4 cut(s) | 179, 1771, 2005, 2886 |
| KflI | GGGWCCC | 1 cut(s) | 5246 |
| Kpn2I | TCCGGA | 4 cut(s) | 359, 2580, 2850, 4647 |
| KpnI | GGTACC | 1 cut(s) | 2935 |
| Ksp22I | TGATCA | 2 cut(s) | 1702, 3786 |
| LguI | GCTCTTC | 2 cut(s) | 2628, 3913 |
| Lsp1109I | GCAGC | 6 cut(s) | 91, 1474, 3575, 3658, 4400, 4580 |
| MaeI | CTAG | 9 cut(s) | 1967, 2991, 3669, 3809, 4001, 4200, 4209, 4565, 4976 |
| MaeIII | GTNAC | 9 cut(s) | 768, 1021, 1498, 2082, 2771, 2896, 3015, 4968, 5203 |
| MbiI | CCGCTC | 3 cut(s) | 353, 1096, 3371 |
| MfeI | CAATTG | 2 cut(s) | 1133, 1656 |
| MflI | RGATCY | 7 cut(s) | 432, 979, 992, 1056, 2381, 2443, 4980 |
| MlsI | TGGCCA | 2 cut(s) | 311, 3963 |
| MluI | ACGCGT | 1 cut(s) | 136 |
| MluNI | TGGCCA | 2 cut(s) | 311, 3963 |
| MlyI | GAGTC | 5 cut(s) | 229, 776, 1533, 1821, 3833 |
| MmeI | TCCRAC | 5 cut(s) | 1286, 1466, 2100, 4039, 5113 |
| Mox20I | TGGCCA | 2 cut(s) | 311, 3963 |
| Mph1103I | ATGCAT | 1 cut(s) | 4765 |
| MroI | TCCGGA | 4 cut(s) | 359, 2580, 2850, 4647 |
| MroXI | GAANNNNTTC | 1 cut(s) | 4602 |
| MscI | TGGCCA | 2 cut(s) | 311, 3963 |
| MslI | CAYNNNNRTG | 7 cut(s) | 295, 1305, 1878, 2123, 2681, 3112, 3640 |
| Msp20I | TGGCCA | 2 cut(s) | 311, 3963 |
| MspA1I | CMGCKG | 4 cut(s) | 1079, 2318, 3853, 4735 |
| MspCI | CTTAAG | 1 cut(s) | 388 |
| MspI | CCGG | 8 cut(s) | 360, 740, 1054, 2156, 2581, 2851, 3608, 4648 |
| MspR9I | CCNGG | 9 cut(s) | 149, 201, 618, 1160, 1623, 1716, 1842, 2416, 2436 |
| MunI | CAATTG | 2 cut(s) | 1133, 1656 |
| Mva1269I | GAATGC | 3 cut(s) | 612, 2707, 4763 |
| MvaI | CCWGG | 9 cut(s) | 149, 201, 618, 1160, 1623, 1716, 1842, 2416, 2436 |
| MvnI | CGCG | 2 cut(s) | 138, 1989 |
| NcoI | CCATGG | 2 cut(s) | 1188, 3913 |
| NdeI | CATATG | 1 cut(s) | 1306 |
| NmeAIII | GCCGAG | 1 cut(s) | 4828 |
| NmuCI | GTSAC | 2 cut(s) | 768, 2082 |
| NsbI | TGCGCA | 2 cut(s) | 180, 2887 |
| NsiI | ATGCAT | 1 cut(s) | 4765 |
| NspV | TTCGAA | 2 cut(s) | 3758, 4134 |
| OliI | CACNNNNGTG | 1 cut(s) | 2123 |
| PaeI | GCATGC | 4 cut(s) | 559, 1888, 4470, 4763 |
| PaeR7I | CTCGAG | 2 cut(s) | 3227, 4452 |
| PagI | TCATGA | 2 cut(s) | 1668, 1927 |
| PasI | CCCWGGG | 2 cut(s) | 200, 1715 |
| PceI | AGGCCT | 1 cut(s) | 5194 |
| PciI | ACATGT | 2 cut(s) | 900, 1873 |
| PciSI | GCTCTTC | 2 cut(s) | 2628, 3913 |
| PctI | GAATGC | 3 cut(s) | 612, 2707, 4763 |
| PdmI | GAANNNNTTC | 1 cut(s) | 4602 |
| PflFI | GACNNNGTC | 1 cut(s) | 5174 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2050 |
| PfoI | TCCNGGA | 1 cut(s) | 616 |
| PleI | GAGTC | 5 cut(s) | 228, 775, 1532, 1820, 3832 |
| PmaCI | CACGTG | 1 cut(s) | 1946 |
| PmlI | CACGTG | 1 cut(s) | 1946 |
| PpsI | GAGTC | 5 cut(s) | 228, 775, 1532, 1820, 3832 |
| Ppu21I | YACGTR | 2 cut(s) | 1946, 3517 |
| PpuMI | RGGWCCY | 3 cut(s) | 2323, 4278, 5246 |
| PscI | ACATGT | 2 cut(s) | 900, 1873 |
| Psp124BI | GAGCTC | 3 cut(s) | 2529, 2640, 4366 |
| Psp1406I | AACGTT | 3 cut(s) | 684, 2488, 3765 |
| Psp5II | RGGWCCY | 3 cut(s) | 2323, 4278, 5246 |
| Psp6I | CCWGG | 9 cut(s) | 147, 199, 616, 1158, 1621, 1714, 1840, 2414, 2434 |
| PspCI | CACGTG | 1 cut(s) | 1946 |
| PspFI | CCCAGC | 2 cut(s) | 817, 2241 |
| PspGI | CCWGG | 9 cut(s) | 147, 199, 616, 1158, 1621, 1714, 1840, 2414, 2434 |
| PspPPI | RGGWCCY | 3 cut(s) | 2323, 4278, 5246 |
| PspXI | VCTCGAGB | 2 cut(s) | 3227, 4452 |
| PstNI | CAGNNNCTG | 3 cut(s) | 623, 1799, 4574 |
| PsuI | RGATCY | 7 cut(s) | 432, 979, 992, 1056, 2381, 2443, 4980 |
| PsyI | GACNNNGTC | 1 cut(s) | 5174 |
| PvuII | CAGCTG | 4 cut(s) | 1079, 2318, 3853, 4735 |
| RseI | CAYNNNNRTG | 7 cut(s) | 295, 1305, 1878, 2123, 2681, 3112, 3640 |
| SacI | GAGCTC | 3 cut(s) | 2529, 2640, 4366 |
| SalI | GTCGAC | 2 cut(s) | 1287, 2777 |
| SapI | GCTCTTC | 2 cut(s) | 2628, 3913 |
| ScaI | AGTACT | 1 cut(s) | 1278 |
| SchI | GAGTC | 5 cut(s) | 229, 776, 1533, 1821, 3833 |
| ScrFI | CCNGG | 9 cut(s) | 149, 201, 618, 1160, 1623, 1716, 1842, 2416, 2436 |
| SfcI | CTRYAG | 3 cut(s) | 2377, 4785, 4900 |
| Sfr274I | CTCGAG | 2 cut(s) | 3227, 4452 |
| SfuI | TTCGAA | 2 cut(s) | 3758, 4134 |
| SgrDI | CGTCGACG | 1 cut(s) | 2777 |
| SinI | GGWCC | 8 cut(s) | 74, 345, 2323, 4278, 4376, 4729, 5086, 5246 |
| SlaI | CTCGAG | 2 cut(s) | 3227, 4452 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 295, 1305, 1878, 2123, 2681, 3112, 3640 |
| SphI | GCATGC | 4 cut(s) | 559, 1888, 4470, 4763 |
| SseBI | AGGCCT | 1 cut(s) | 5194 |
| SspI | AATATT | 1 cut(s) | 1598 |
| SspMI | CTAG | 9 cut(s) | 1967, 2991, 3669, 3809, 4001, 4200, 4209, 4565, 4976 |
| SstI | GAGCTC | 3 cut(s) | 2529, 2640, 4366 |
| StuI | AGGCCT | 1 cut(s) | 5194 |
| StyD4I | CCNGG | 9 cut(s) | 147, 199, 616, 1158, 1621, 1714, 1840, 2414, 2434 |
| StyI | CCWWGG | 9 cut(s) | 77, 464, 1188, 1292, 1966, 2308, 2914, 3357, 3913 |
| TatI | WGTACW | 4 cut(s) | 903, 1276, 4269, 4474 |
| TauI | GCSGC | 5 cut(s) | 353, 3224, 3371, 3668, 4016 |
| TseFI | GTSAC | 2 cut(s) | 768, 2082 |
| TseI | GCWGC | 6 cut(s) | 104, 1462, 3563, 3646, 4388, 4568 |
| Tsp45I | GTSAC | 2 cut(s) | 768, 2082 |
| TspGWI | ACGGA | 3 cut(s) | 716, 3897, 5319 |
| Tth111I | GACNNNGTC | 1 cut(s) | 5174 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2050 |
| Vha464I | CTTAAG | 1 cut(s) | 388 |
| VneI | GTGCAC | 1 cut(s) | 4930 |
| VpaK11BI | GGWCC | 8 cut(s) | 74, 345, 2323, 4278, 4376, 4729, 5086, 5246 |
| XagI | CCTNNNNNAGG | 3 cut(s) | 2719, 3192, 4883 |
| XapI | RAATTY | 7 cut(s) | 84, 213, 488, 1427, 1742, 2225, 2995 |
| XcmI | CCANNNNNNNNNTGG | 4 cut(s) | 1214, 1372, 1619, 3931 |
| XhoI | CTCGAG | 2 cut(s) | 3227, 4452 |
| XmaJI | CCTAGG | 1 cut(s) | 1966 |
| XmiI | GTMKAC | 4 cut(s) | 1288, 2667, 2778, 4950 |
| XmnI | GAANNNNTTC | 1 cut(s) | 4602 |
| XspI | CTAG | 9 cut(s) | 1967, 2991, 3669, 3809, 4001, 4200, 4209, 4565, 4976 |
| ZraI | GACGTC | 2 cut(s) | 725, 3103 |
| ZrmI | AGTACT | 1 cut(s) | 1278 |
| Zsp2I | ATGCAT | 1 cut(s) | 4765 |