Rw1G022170

Uncharacterized protein K02A2.6-like

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Forward (+)
46995282 .. 46995833
552 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G022170.1

Sequence Viewer

Length: 552 bp
ATGGCGTTGTCTGAGTTCACGTTTCAATATGTGTCTCAAAAGTCAGTCAAGGGTCAAGCATTGGCCGACTTTCTTGCTCATCACCCTTCGACCGAGTTTGAGGGAGCTGAGGAGGTTGATATTGGGATCATATATGTGGCTTCCATGACCAATAACCACTGGACCATGTATTTTGATGGGTCTAGTACTGAATTTTCCGCCGGAGCTGGTGTTGTCATTGAAACGCCTGAGGGACAAAAGTTCCAGTTCGCCTTCCAACTAGACTTTACATGCACAAACAATCAGGCAGAATATAAGGCTCTTATTGTCGGTTTAGAGATTCTCCAAGAGATGGGAGCACGGCGAGTTCTGGTGTTCGGGTATTCTCAACTGGTCATTAACCAAATGAATAAGGAATTCAAATGCACAAGCTGGGGACTTTTATCCTATCACGCTTTAGCTGACCAGCTCGCCAACACGTTCGATCGAATCTCTTTCACCCACCTCCCAAGGGGACAGAACATGGAGGCCAATGAGATGGCCCAATTAGCCTCAGGGTTACGGATCTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

183

Amino Acids

20.46

Weight (kDa)

4.91

Isoelectric Point (pI)

28.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RNase_H PF00075 52 - 173 2.4e-06 RNase H
RVT_3 PF13456 58 - 176 1.3e-18 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000160)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11612 FvH4_2g25851 FvH4_3g22802 FvH4_3g22805 FvH4_3g31361 FvH4_3g31382 FvH4_4g05272 FvH4_4g05273 FvH4_4g14567 FvH4_4g15161 FvH4_5g22540 FvH4_6g13113 FvH4_6g31923 FvH4_6g31924 FvH4_6g33651 FvH4_6g45122 FvH4_7g03662
pyrus_communis pycom01g04240 pycom01g24010 pycom02g18210 pycom02g19420 pycom05g06510 pycom09g15750 pycom09g18940 pycom12g02580 pycom12g03100 pycom12g08310 pycom13g22710 pycom13g28060 pycom16g18340 pycom16g18350 pycom16g24880 pycom16g26240 pycom461g00260 pycom520g00980 pycom520g01320
rosa_chinensis RchiOBHm_Chr1g0320731 RchiOBHm_Chr2g0102771 RchiOBHm_Chr3g0462151 RchiOBHm_Chr5g0038141 RchiOBHm_Chr5g0069371 RchiOBHm_Chr7g0239101
rosa_multiflora Rmu_co8038252.1_g000001 Rmu_co8138412.1_g000001 Rmu_co8331087.1_g000001 Rmu_co8479311.1_g000001 Rmu_sc0000112.1_g000018 Rmu_sc0000346.1_g000012 Rmu_sc0002102.1_g000002 Rmu_sc0003505.1_g000013 Rmu_sc0004249.1_g000007 Rmu_sc0004448.1_g000010 Rmu_sc0004594.1_g000011 Rmu_sc0004915.1_g000010 Rmu_sc0008019.1_g000019 Rmu_sc0008303.1_g000001 Rmu_sc0008355.1_g000005 Rmu_sc0009253.1_g000018 Rmu_sc0010211.1_g000002 Rmu_sc0010252.1_g000009 Rmu_sc0011534.1_g000008 Rmu_sc0014811.1_g000009 Rmu_sc0019475.1_g000001 Rmu_sc0024897.1_g000001 Rmu_sc0024898.1_g000001 Rmu_sc0031791.1_g000001 Rmu_sc0038715.1_g000001
rosa_roxburghii Rroxscaffold_165G00436940 Rroxscaffold_174G00435270 Rroxscaffold_177G00434330 Rroxscaffold_177G00434340 Rroxscaffold_177G00434350 Rroxscaffold_1G00002160 Rroxscaffold_1G00025260 Rroxscaffold_1G00042950 Rroxscaffold_1G00068010 Rroxscaffold_2G00107530 Rroxscaffold_3G00221190 Rroxscaffold_3G00221520 Rroxscaffold_3G00223200 Rroxscaffold_4G00322230 Rroxscaffold_4G00331810 Rroxscaffold_5G00385150 Rroxscaffold_5G00387510 Rroxscaffold_6G00410520 Rroxscaffold_6G00423360 Rroxscaffold_6G00423370 Rroxscaffold_6G00429210 Rroxscaffold_7G00158300 Rroxscaffold_7G00163480 Rroxscaffold_7G00171410 Rroxscaffold_7G00178940 Rroxscaffold_7G00199480 Rroxscaffold_7G00205630 Rroxscaffold_7G00207440
rosa_rugosa Rorug01G0056400 Rorug04G0063900 Rorug05G0251400 Rorug07G0221900
rosa_samantha Rh1DG169400 Rh2AG292900 Rh2DG519200 Rh4DG260600 Rh5AG042600 Rh6BG117500
rosa_wichuraiana Rw0G001900 Rw0G005150 Rw0G006380 Rw0G015140 Rw0G016320 Rw0G019440 Rw0G019840 Rw0G023740 Rw1G001590 Rw1G002180 Rw1G003560 Rw1G004280 Rw1G006110 Rw1G006680 Rw1G007920 Rw1G008480 Rw1G009120 Rw1G010310 Rw1G014900 Rw1G019650 Rw1G022070 Rw1G022170 Rw1G041570 Rw2G002740 Rw2G005760 Rw2G032370 Rw2G046770 Rw2G050600 Rw2G051420 Rw3G015930 Rw3G016280 Rw3G019580 Rw3G028420 Rw4G003430 Rw4G005350 Rw4G007530 Rw4G008150 Rw4G009580 Rw4G010250 Rw4G015800 Rw4G017000 Rw4G017910 Rw4G018510 Rw4G019700 Rw4G031010 Rw5G012650 Rw5G020140 Rw5G022060 Rw5G034420 Rw5G035560 Rw5G043010 Rw5G046750 Rw5G047340 Rw5G049500 Rw6G001390 Rw6G002210 Rw6G004530 Rw6G004770 Rw6G005100 Rw6G005890 Rw6G011860 Rw6G014680 Rw6G019480 Rw6G028970 Rw6G033800 Rw7G013050 Rw7G014800 Rw7G025760 Rw7G025850 Rw7G026730 Rw7G026870 Rw7G036330 Rw7G036430 Rw7G039320 Rw7G039510 Rw7G039560 Rw7G041370 Rw7G042050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 331
AciI CCGC 1 cut(s) 198
AclWI GGATC 2 cut(s) 134, 551
AcoI YGGCCR 1 cut(s) 63
AcsI RAATTY 2 cut(s) 191, 395
AfaI GTAC 1 cut(s) 187
AfiI CCNNNNNNNGG 2 cut(s) 331, 490
AflIII ACRYGT 1 cut(s) 456
AgsI TTSAA 3 cut(s) 26, 221, 400
AluBI AGCT 5 cut(s) 107, 206, 411, 440, 448
AluI AGCT 5 cut(s) 107, 206, 411, 440, 448
Alw21I GWGCWC 1 cut(s) 340
Alw26I GTCTC 1 cut(s) 39
AlwI GGATC 2 cut(s) 134, 551
AoxI GGCC 3 cut(s) 63, 507, 519
ApoI RAATTY 2 cut(s) 191, 395
AspS9I GGNCC 2 cut(s) 162, 520
AsuHPI GGTGA 2 cut(s) 74, 469
AvaII GGWCC 1 cut(s) 162
AxyI CCTNAGG 2 cut(s) 228, 532
Bbv12I GWGCWC 1 cut(s) 340
BbvCI CCTCAGC 1 cut(s) 108
BccI CCATC 3 cut(s) 170, 325, 511
BceAI ACGGC 1 cut(s) 356
BcgI CGANNNNNNTGC 2 cut(s) 56, 90
BcoDI GTCTC 1 cut(s) 39
BfaI CTAG 2 cut(s) 183, 260
BmcAI AGTACT 1 cut(s) 187
Bme18I GGWCC 1 cut(s) 162
BmgT120I GGNCC 2 cut(s) 162, 520
Bpu10I CCTNAGC 1 cut(s) 108
BsaJI CCNNGG 1 cut(s) 488
BsaXI ACNNNNNCTCC 2 cut(s) 195, 225
Bsc4I CCNNNNNNNGG 2 cut(s) 331, 490
Bse1I ACTGG 3 cut(s) 164, 244, 375
Bse21I CCTNAGG 2 cut(s) 228, 532
BseDI CCNNGG 1 cut(s) 488
BseLI CCNNNNNNNGG 2 cut(s) 331, 490
BseMII CTCAG 3 cut(s) 99, 219, 546
BseNI ACTGG 3 cut(s) 164, 244, 375
BseRI GAGGAG 1 cut(s) 125
BseYI CCCAGC 1 cut(s) 411
Bsh1285I CGRYCG 2 cut(s) 93, 466
BshFI GGCC 3 cut(s) 65, 509, 521
BsiEI CGRYCG 2 cut(s) 93, 466
BsiHKAI GWGCWC 1 cut(s) 340
BsiSI CCGG 1 cut(s) 201
BslFI GGGAC 3 cut(s) 246, 429, 507
BslI CCNNNNNNNGG 2 cut(s) 331, 490
BsmAI GTCTC 1 cut(s) 39
BsmFI GGGAC 3 cut(s) 246, 429, 507
BsnI GGCC 3 cut(s) 65, 509, 521
Bsp1286I GDGCHC 1 cut(s) 340
Bsp143I GATC 3 cut(s) 126, 463, 543
BspACI CCGC 1 cut(s) 198
BspANI GGCC 3 cut(s) 65, 509, 521
BspCNI CTCAG 4 cut(s) 4, 100, 220, 545
BspPI GGATC 2 cut(s) 134, 551
BsrI ACTGG 3 cut(s) 164, 244, 375
BssECI CCNNGG 1 cut(s) 488
BssMI GATC 3 cut(s) 126, 463, 543
BssT1I CCWWGG 1 cut(s) 488
BstC8I GCNNGC 1 cut(s) 450
BstDEI CTNAG 4 cut(s) 12, 108, 228, 532
BstKTI GATC 3 cut(s) 129, 466, 546
BstMAI GTCTC 1 cut(s) 39
BstMBI GATC 3 cut(s) 126, 463, 543
BstMCI CGRYCG 2 cut(s) 93, 466
BstMWI GCNNNNNNNGC 1 cut(s) 527
BstNSI RCATGY 1 cut(s) 273
BstX2I RGATCY 1 cut(s) 543
BstXI CCANNNNNNTGG 1 cut(s) 517
BstYI RGATCY 1 cut(s) 543
Bsu36I CCTNAGG 2 cut(s) 228, 532
BsuRI GGCC 3 cut(s) 65, 509, 521
BtsIMutI CAGTG 1 cut(s) 157
Cac8I GCNNGC 1 cut(s) 450
Cfr13I GGNCC 2 cut(s) 162, 520
Csp6I GTAC 1 cut(s) 186
CviAII CATG 4 cut(s) 145, 166, 270, 502
CviQI GTAC 1 cut(s) 186
DdeI CTNAG 4 cut(s) 12, 108, 228, 532
DpnI GATC 3 cut(s) 128, 465, 545
DpnII GATC 3 cut(s) 126, 463, 543
EaeI YGGCCR 1 cut(s) 63
EciI GGCGGA 1 cut(s) 187
Eco130I CCWWGG 1 cut(s) 488
Eco47I GGWCC 1 cut(s) 162
Eco81I CCTNAGG 2 cut(s) 228, 532
EcoRI GAATTC 1 cut(s) 395
EcoT14I CCWWGG 1 cut(s) 488
ErhI CCWWGG 1 cut(s) 488
FaeI CATG 4 cut(s) 148, 169, 273, 505
FaiI YATR 9 cut(s) 30, 131, 133, 135, 146, 167, 271, 294, 503
FaqI GGGAC 3 cut(s) 246, 429, 507
FatI CATG 4 cut(s) 144, 165, 269, 501
FspBI CTAG 2 cut(s) 183, 260
GsaI CCCAGC 1 cut(s) 415
HaeIII GGCC 3 cut(s) 65, 509, 521
HapII CCGG 1 cut(s) 201
Hin1II CATG 4 cut(s) 148, 169, 273, 505
HinfI GANTC 2 cut(s) 319, 468
HpaII CCGG 1 cut(s) 201
HphI GGTGA 2 cut(s) 74, 469
Hpy166II GTNNAC 1 cut(s) 18
Hpy188I TCNGA 1 cut(s) 13
Hpy8I GTNNAC 1 cut(s) 18
HpyAV CCTTC 2 cut(s) 96, 262
HpyCH4IV ACGT 2 cut(s) 20, 458
HpyCH4V TGCA 2 cut(s) 273, 405
HpyF10VI GCNNNNNNNGC 1 cut(s) 527
HpyF3I CTNAG 4 cut(s) 12, 108, 228, 532
HpySE526I ACGT 2 cut(s) 20, 458
Hsp92II CATG 4 cut(s) 148, 169, 273, 505
Kzo9I GATC 3 cut(s) 126, 463, 543
LmnI GCTCC 3 cut(s) 104, 203, 335
MaeI CTAG 2 cut(s) 183, 260
MaeII ACGT 2 cut(s) 20, 458
MaeIII GTNAC 1 cut(s) 537
MalI GATC 3 cut(s) 128, 465, 545
MboI GATC 3 cut(s) 126, 463, 543
MflI RGATCY 1 cut(s) 543
MhlI GDGCHC 1 cut(s) 340
MluCI AATT 3 cut(s) 191, 395, 524
MmeI TCCRAC 1 cut(s) 280
MnlI CCTC 7 cut(s) 94, 103, 106, 223, 494, 499, 541
MseI TTAA 1 cut(s) 378
MslI CAYNNNNRTG 1 cut(s) 134
MspI CCGG 1 cut(s) 201
MwoI GCNNNNNNNGC 1 cut(s) 527
NdeII GATC 3 cut(s) 126, 463, 543
NlaIII CATG 4 cut(s) 148, 169, 273, 505
NspI RCATGY 1 cut(s) 273
PfeI GAWTC 2 cut(s) 319, 468
PflMI CCANNNNNTGG 1 cut(s) 331
Ple19I CGATCG 1 cut(s) 466
PspFI CCCAGC 1 cut(s) 411
PspPI GGNCC 2 cut(s) 162, 520
PsuI RGATCY 1 cut(s) 543
PvuI CGATCG 1 cut(s) 466
RsaI GTAC 1 cut(s) 187
RsaNI GTAC 1 cut(s) 186
RseI CAYNNNNRTG 1 cut(s) 134
SaqAI TTAA 1 cut(s) 378
Sau3AI GATC 3 cut(s) 126, 463, 543
Sau96I GGNCC 2 cut(s) 162, 520
ScaI AGTACT 1 cut(s) 187
SduI GDGCHC 1 cut(s) 340
SetI ASST 9 cut(s) 23, 109, 117, 208, 413, 442, 450, 461, 486
SinI GGWCC 1 cut(s) 162
SmiMI CAYNNNNRTG 1 cut(s) 134
Sse9I AATT 3 cut(s) 191, 395, 524
SsiI CCGC 1 cut(s) 198
SspMI CTAG 2 cut(s) 183, 260
StyI CCWWGG 1 cut(s) 488
TaiI ACGT 2 cut(s) 23, 461
TaqI TCGA 3 cut(s) 89, 462, 466
TaqII GACCGA 1 cut(s) 107
TasI AATT 3 cut(s) 191, 395, 524
TatI WGTACW 1 cut(s) 185
TfiI GAWTC 2 cut(s) 319, 468
Tru1I TTAA 1 cut(s) 378
Tru9I TTAA 1 cut(s) 378
TscAI CASTG 1 cut(s) 164
TspDTI ATGAA 1 cut(s) 401
TspRI CASTG 1 cut(s) 164
Van91I CCANNNNNTGG 1 cut(s) 331
VpaK11BI GGWCC 1 cut(s) 162
XapI RAATTY 2 cut(s) 191, 395
XceI RCATGY 1 cut(s) 273
XspI CTAG 2 cut(s) 183, 260
ZrmI AGTACT 1 cut(s) 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.