Rw7G041370

Uncharacterized protein K02A2.6-like

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
Physical Location & Seq
Forward (+)
64535626 .. 64536054
429 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G041370.1

Sequence Viewer

Length: 429 bp
ATGTTACCTGTCGAGGTGAAACTGAAATCACTTAGATTTGCTGCTCAAAATGAAATGGTAGCTGACGACTACACTCAGGCCTTGATTCAGGAACTTGAAGAACTTGACCAAGAGCGAATGGACGCTTACAACCGAATTGAAGCACAGAAAAAGGCTGTGGCCCGTGCATACAACAAACGAGTTAAGTCTAAGTCATTTGCTGAGGAAGATTTAGTTTGGAAAGCCGTTTTGCCTATCGGAACTAAAGATAAACGTTTCGGAAAATGGTCGCCAAGGTGGGAAGGCCTGTTTATCATCAATCAAGTGTTGGGGAAAGGTGCATATCAATTGAGAGATCAAGATGGAGAGCTGCATGCAATGCCTATCAACGGGCAATTCCTCAAGAAATATTACCCCACTACCTGGGAGATGATGGAGCAAGAATTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

142

Amino Acids

16.64

Weight (kDa)

6.62

Isoelectric Point (pI)

38.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000160)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11612 FvH4_2g25851 FvH4_3g22802 FvH4_3g22805 FvH4_3g31361 FvH4_3g31382 FvH4_4g05272 FvH4_4g05273 FvH4_4g14567 FvH4_4g15161 FvH4_5g22540 FvH4_6g13113 FvH4_6g31923 FvH4_6g31924 FvH4_6g33651 FvH4_6g45122 FvH4_7g03662
pyrus_communis pycom01g04240 pycom01g24010 pycom02g18210 pycom02g19420 pycom05g06510 pycom09g15750 pycom09g18940 pycom12g02580 pycom12g03100 pycom12g08310 pycom13g22710 pycom13g28060 pycom16g18340 pycom16g18350 pycom16g24880 pycom16g26240 pycom461g00260 pycom520g00980 pycom520g01320
rosa_chinensis RchiOBHm_Chr1g0320731 RchiOBHm_Chr2g0102771 RchiOBHm_Chr3g0462151 RchiOBHm_Chr5g0038141 RchiOBHm_Chr5g0069371 RchiOBHm_Chr7g0239101
rosa_multiflora Rmu_co8038252.1_g000001 Rmu_co8138412.1_g000001 Rmu_co8331087.1_g000001 Rmu_co8479311.1_g000001 Rmu_sc0000112.1_g000018 Rmu_sc0000346.1_g000012 Rmu_sc0002102.1_g000002 Rmu_sc0003505.1_g000013 Rmu_sc0004249.1_g000007 Rmu_sc0004448.1_g000010 Rmu_sc0004594.1_g000011 Rmu_sc0004915.1_g000010 Rmu_sc0008019.1_g000019 Rmu_sc0008303.1_g000001 Rmu_sc0008355.1_g000005 Rmu_sc0009253.1_g000018 Rmu_sc0010211.1_g000002 Rmu_sc0010252.1_g000009 Rmu_sc0011534.1_g000008 Rmu_sc0014811.1_g000009 Rmu_sc0019475.1_g000001 Rmu_sc0024897.1_g000001 Rmu_sc0024898.1_g000001 Rmu_sc0031791.1_g000001 Rmu_sc0038715.1_g000001
rosa_roxburghii Rroxscaffold_165G00436940 Rroxscaffold_174G00435270 Rroxscaffold_177G00434330 Rroxscaffold_177G00434340 Rroxscaffold_177G00434350 Rroxscaffold_1G00002160 Rroxscaffold_1G00025260 Rroxscaffold_1G00042950 Rroxscaffold_1G00068010 Rroxscaffold_2G00107530 Rroxscaffold_3G00221190 Rroxscaffold_3G00221520 Rroxscaffold_3G00223200 Rroxscaffold_4G00322230 Rroxscaffold_4G00331810 Rroxscaffold_5G00385150 Rroxscaffold_5G00387510 Rroxscaffold_6G00410520 Rroxscaffold_6G00423360 Rroxscaffold_6G00423370 Rroxscaffold_6G00429210 Rroxscaffold_7G00158300 Rroxscaffold_7G00163480 Rroxscaffold_7G00171410 Rroxscaffold_7G00178940 Rroxscaffold_7G00199480 Rroxscaffold_7G00205630 Rroxscaffold_7G00207440
rosa_rugosa Rorug01G0056400 Rorug04G0063900 Rorug05G0251400 Rorug07G0221900
rosa_samantha Rh1DG169400 Rh2AG292900 Rh2DG519200 Rh4DG260600 Rh5AG042600 Rh6BG117500
rosa_wichuraiana Rw0G001900 Rw0G005150 Rw0G006380 Rw0G015140 Rw0G016320 Rw0G019440 Rw0G019840 Rw0G023740 Rw1G001590 Rw1G002180 Rw1G003560 Rw1G004280 Rw1G006110 Rw1G006680 Rw1G007920 Rw1G008480 Rw1G009120 Rw1G010310 Rw1G014900 Rw1G019650 Rw1G022070 Rw1G022170 Rw1G041570 Rw2G002740 Rw2G005760 Rw2G032370 Rw2G046770 Rw2G050600 Rw2G051420 Rw3G015930 Rw3G016280 Rw3G019580 Rw3G028420 Rw4G003430 Rw4G005350 Rw4G007530 Rw4G008150 Rw4G009580 Rw4G010250 Rw4G015800 Rw4G017000 Rw4G017910 Rw4G018510 Rw4G019700 Rw4G031010 Rw5G012650 Rw5G020140 Rw5G022060 Rw5G034420 Rw5G035560 Rw5G043010 Rw5G046750 Rw5G047340 Rw5G049500 Rw6G001390 Rw6G002210 Rw6G004530 Rw6G004770 Rw6G005100 Rw6G005890 Rw6G011860 Rw6G014680 Rw6G019480 Rw6G028970 Rw6G033800 Rw7G013050 Rw7G014800 Rw7G025760 Rw7G025850 Rw7G026730 Rw7G026870 Rw7G036330 Rw7G036430 Rw7G039320 Rw7G039510 Rw7G039560 Rw7G041370 Rw7G042050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 402
AclI AACGTT 1 cut(s) 253
AfiI CCNNNNNNNGG 2 cut(s) 368, 402
AgsI TTSAA 2 cut(s) 98, 140
AjnI CCWGG 1 cut(s) 401
AluBI AGCT 2 cut(s) 62, 349
AluI AGCT 2 cut(s) 62, 349
AoxI GGCC 3 cut(s) 78, 159, 283
ApeKI GCWGC 2 cut(s) 41, 349
AspS9I GGNCC 1 cut(s) 160
AsuHPI GGTGA 1 cut(s) 28
BbvCI CCTCAGC 1 cut(s) 201
BbvI GCAGC 2 cut(s) 28, 336
BccI CCATC 2 cut(s) 335, 406
BceAI ACGGC 1 cut(s) 209
BciT130I CCWGG 1 cut(s) 403
BisI GCNGC 2 cut(s) 42, 350
BlsI GCNGC 2 cut(s) 43, 351
Bme1390I CCNGG 1 cut(s) 403
BmgT120I GGNCC 1 cut(s) 160
BmrFI CCNGG 1 cut(s) 403
Bpu10I CCTNAGC 1 cut(s) 201
BpuEI CTTGAG 1 cut(s) 365
BsaJI CCNNGG 2 cut(s) 272, 402
Bsc4I CCNNNNNNNGG 2 cut(s) 368, 402
Bse3DI GCAATG 1 cut(s) 363
BseBI CCWGG 1 cut(s) 403
BseDI CCNNGG 2 cut(s) 272, 402
BseLI CCNNNNNNNGG 2 cut(s) 368, 402
BseMI GCAATG 1 cut(s) 363
BseMII CTCAG 2 cut(s) 89, 192
BseXI GCAGC 2 cut(s) 28, 336
BshFI GGCC 3 cut(s) 80, 161, 285
BslI CCNNNNNNNGG 2 cut(s) 368, 402
BsnI GGCC 3 cut(s) 80, 161, 285
Bsp143I GATC 1 cut(s) 334
BspANI GGCC 3 cut(s) 80, 161, 285
BspCNI CTCAG 2 cut(s) 88, 193
BsrDI GCAATG 1 cut(s) 363
BssECI CCNNGG 2 cut(s) 272, 402
BssMI GATC 1 cut(s) 334
BssT1I CCWWGG 1 cut(s) 272
Bst2UI CCWGG 1 cut(s) 403
BstAPI GCANNNNNTGC 1 cut(s) 358
BstC8I GCNNGC 1 cut(s) 354
BstDEI CTNAG 4 cut(s) 32, 75, 189, 201
BstKTI GATC 1 cut(s) 337
BstMBI GATC 1 cut(s) 334
BstMWI GCNNNNNNNGC 1 cut(s) 358
BstNI CCWGG 1 cut(s) 403
BstNSI RCATGY 1 cut(s) 356
BstSCI CCNGG 1 cut(s) 401
BstV1I GCAGC 2 cut(s) 28, 336
BsuRI GGCC 3 cut(s) 80, 161, 285
Cac8I GCNNGC 1 cut(s) 354
Cfr13I GGNCC 1 cut(s) 160
CseI GACGC 1 cut(s) 131
CviAII CATG 1 cut(s) 353
CviJI RGCY 7 cut(s) 62, 80, 155, 161, 224, 285, 349
CviKI_1 RGCY 7 cut(s) 62, 80, 155, 161, 224, 285, 349
DdeI CTNAG 4 cut(s) 32, 75, 189, 201
DpnI GATC 1 cut(s) 336
DpnII GATC 1 cut(s) 334
Eco130I CCWWGG 1 cut(s) 272
Eco147I AGGCCT 2 cut(s) 80, 285
EcoRII CCWGG 1 cut(s) 401
EcoT14I CCWWGG 1 cut(s) 272
ErhI CCWWGG 1 cut(s) 272
FaeI CATG 1 cut(s) 356
FaiI YATR 4 cut(s) 169, 322, 354, 427
FatI CATG 1 cut(s) 352
Fnu4HI GCNGC 2 cut(s) 42, 350
Fsp4HI GCNGC 2 cut(s) 42, 350
GluI GCNGC 2 cut(s) 42, 350
HaeIII GGCC 3 cut(s) 80, 161, 285
HgaI GACGC 1 cut(s) 131
Hin1II CATG 1 cut(s) 356
HinfI GANTC 1 cut(s) 85
HphI GGTGA 1 cut(s) 28
Hpy188I TCNGA 2 cut(s) 239, 260
Hpy188III TCNNGA 3 cut(s) 89, 338, 382
HpyAV CCTTC 1 cut(s) 275
HpyCH4IV ACGT 1 cut(s) 253
HpyCH4V TGCA 4 cut(s) 167, 320, 352, 356
HpyF10VI GCNNNNNNNGC 1 cut(s) 358
HpyF3I CTNAG 4 cut(s) 32, 75, 189, 201
HpySE526I ACGT 1 cut(s) 253
Hsp92II CATG 1 cut(s) 356
Kzo9I GATC 1 cut(s) 334
LmnI GCTCC 1 cut(s) 415
LpnPI CCDG 6 cut(s) 21, 62, 74, 299, 388, 415
Lsp1109I GCAGC 2 cut(s) 28, 336
MaeII ACGT 1 cut(s) 253
MaeIII GTNAC 1 cut(s) 3
MalI GATC 1 cut(s) 336
MboI GATC 1 cut(s) 334
MboII GAAGA 2 cut(s) 110, 218
MfeI CAATTG 1 cut(s) 326
MluCI AATT 4 cut(s) 135, 326, 374, 422
MnlI CCTC 3 cut(s) 7, 196, 389
MseI TTAA 1 cut(s) 183
MspR9I CCNGG 1 cut(s) 403
MunI CAATTG 1 cut(s) 326
MvaI CCWGG 1 cut(s) 403
MwoI GCNNNNNNNGC 1 cut(s) 358
NdeII GATC 1 cut(s) 334
NlaIII CATG 1 cut(s) 356
NspI RCATGY 1 cut(s) 356
PaeI GCATGC 1 cut(s) 356
PceI AGGCCT 2 cut(s) 80, 285
PfeI GAWTC 1 cut(s) 85
PflMI CCANNNNNTGG 1 cut(s) 402
PkrI GCNGC 2 cut(s) 43, 351
Psp1406I AACGTT 1 cut(s) 253
Psp6I CCWGG 1 cut(s) 401
PspGI CCWGG 1 cut(s) 401
PspPI GGNCC 1 cut(s) 160
SaqAI TTAA 1 cut(s) 183
SatI GCNGC 2 cut(s) 42, 350
Sau3AI GATC 1 cut(s) 334
Sau96I GGNCC 1 cut(s) 160
ScrFI CCNGG 1 cut(s) 403
SetI ASST 8 cut(s) 10, 18, 64, 256, 278, 319, 351, 404
SmlI CTYRAG 1 cut(s) 380
SmoI CTYRAG 1 cut(s) 380
SphI GCATGC 1 cut(s) 356
Sse9I AATT 4 cut(s) 135, 326, 374, 422
SseBI AGGCCT 2 cut(s) 80, 285
SspI AATATT 1 cut(s) 389
StuI AGGCCT 2 cut(s) 80, 285
StyD4I CCNGG 1 cut(s) 401
StyI CCWWGG 1 cut(s) 272
TaiI ACGT 1 cut(s) 256
TaqI TCGA 1 cut(s) 12
TasI AATT 4 cut(s) 135, 326, 374, 422
TfiI GAWTC 1 cut(s) 85
Tru1I TTAA 1 cut(s) 183
Tru9I TTAA 1 cut(s) 183
TseI GCWGC 2 cut(s) 41, 349
TspDTI ATGAA 1 cut(s) 66
Van91I CCANNNNNTGG 1 cut(s) 402
XceI RCATGY 1 cut(s) 356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.