Rmu_sc0009253.1_g000018

Uncharacterized protein K02A2.6-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009253.1
Physical Location & Seq
Reverse (-)
56847 .. 57143
297 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009253.1_g000018.1.cds

Sequence Viewer

Length: 297 bp
atgatcaatcaatttcgtgagaagtacaagtgcacaagctacttgcttgcaccgtatttgagtcgcactcttgaacttctggcccaatttgacaacgtgggcttagagcatattcctcgccatcgcaactttgcagccaatgaactcgctcagttggctacaggcgttaccttgaaatatggggctagcgagcaaattctaaaggctgagcaacgtacgctgccttcgtggcttgtacgacctgacccaccagatgagcccacagtggaggctcttaattctattgatgtggattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

98

Amino Acids

11.14

Weight (kDa)

5.31

Isoelectric Point (pI)

30.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000160)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11612 FvH4_2g25851 FvH4_3g22802 FvH4_3g22805 FvH4_3g31361 FvH4_3g31382 FvH4_4g05272 FvH4_4g05273 FvH4_4g14567 FvH4_4g15161 FvH4_5g22540 FvH4_6g13113 FvH4_6g31923 FvH4_6g31924 FvH4_6g33651 FvH4_6g45122 FvH4_7g03662
pyrus_communis pycom01g04240 pycom01g24010 pycom02g18210 pycom02g19420 pycom05g06510 pycom09g15750 pycom09g18940 pycom12g02580 pycom12g03100 pycom12g08310 pycom13g22710 pycom13g28060 pycom16g18340 pycom16g18350 pycom16g24880 pycom16g26240 pycom461g00260 pycom520g00980 pycom520g01320
rosa_chinensis RchiOBHm_Chr1g0320731 RchiOBHm_Chr2g0102771 RchiOBHm_Chr3g0462151 RchiOBHm_Chr5g0038141 RchiOBHm_Chr5g0069371 RchiOBHm_Chr7g0239101
rosa_multiflora Rmu_co8038252.1_g000001 Rmu_co8138412.1_g000001 Rmu_co8331087.1_g000001 Rmu_co8479311.1_g000001 Rmu_sc0000112.1_g000018 Rmu_sc0000346.1_g000012 Rmu_sc0002102.1_g000002 Rmu_sc0003505.1_g000013 Rmu_sc0004249.1_g000007 Rmu_sc0004448.1_g000010 Rmu_sc0004594.1_g000011 Rmu_sc0004915.1_g000010 Rmu_sc0008019.1_g000019 Rmu_sc0008303.1_g000001 Rmu_sc0008355.1_g000005 Rmu_sc0009253.1_g000018 Rmu_sc0010211.1_g000002 Rmu_sc0010252.1_g000009 Rmu_sc0011534.1_g000008 Rmu_sc0014811.1_g000009 Rmu_sc0019475.1_g000001 Rmu_sc0024897.1_g000001 Rmu_sc0024898.1_g000001 Rmu_sc0031791.1_g000001 Rmu_sc0038715.1_g000001
rosa_roxburghii Rroxscaffold_165G00436940 Rroxscaffold_174G00435270 Rroxscaffold_177G00434330 Rroxscaffold_177G00434340 Rroxscaffold_177G00434350 Rroxscaffold_1G00002160 Rroxscaffold_1G00025260 Rroxscaffold_1G00042950 Rroxscaffold_1G00068010 Rroxscaffold_2G00107530 Rroxscaffold_3G00221190 Rroxscaffold_3G00221520 Rroxscaffold_3G00223200 Rroxscaffold_4G00322230 Rroxscaffold_4G00331810 Rroxscaffold_5G00385150 Rroxscaffold_5G00387510 Rroxscaffold_6G00410520 Rroxscaffold_6G00423360 Rroxscaffold_6G00423370 Rroxscaffold_6G00429210 Rroxscaffold_7G00158300 Rroxscaffold_7G00163480 Rroxscaffold_7G00171410 Rroxscaffold_7G00178940 Rroxscaffold_7G00199480 Rroxscaffold_7G00205630 Rroxscaffold_7G00207440
rosa_rugosa Rorug01G0056400 Rorug04G0063900 Rorug05G0251400 Rorug07G0221900
rosa_samantha Rh1DG169400 Rh2AG292900 Rh2DG519200 Rh4DG260600 Rh5AG042600 Rh6BG117500
rosa_wichuraiana Rw0G001900 Rw0G005150 Rw0G006380 Rw0G015140 Rw0G016320 Rw0G019440 Rw0G019840 Rw0G023740 Rw1G001590 Rw1G002180 Rw1G003560 Rw1G004280 Rw1G006110 Rw1G006680 Rw1G007920 Rw1G008480 Rw1G009120 Rw1G010310 Rw1G014900 Rw1G019650 Rw1G022070 Rw1G022170 Rw1G041570 Rw2G002740 Rw2G005760 Rw2G032370 Rw2G046770 Rw2G050600 Rw2G051420 Rw3G015930 Rw3G016280 Rw3G019580 Rw3G028420 Rw4G003430 Rw4G005350 Rw4G007530 Rw4G008150 Rw4G009580 Rw4G010250 Rw4G015800 Rw4G017000 Rw4G017910 Rw4G018510 Rw4G019700 Rw4G031010 Rw5G012650 Rw5G020140 Rw5G022060 Rw5G034420 Rw5G035560 Rw5G043010 Rw5G046750 Rw5G047340 Rw5G049500 Rw6G001390 Rw6G002210 Rw6G004530 Rw6G004770 Rw6G005100 Rw6G005890 Rw6G011860 Rw6G014680 Rw6G019480 Rw6G028970 Rw6G033800 Rw7G013050 Rw7G014800 Rw7G025760 Rw7G025850 Rw7G026730 Rw7G026870 Rw7G036330 Rw7G036430 Rw7G039320 Rw7G039510 Rw7G039560 Rw7G041370 Rw7G042050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 195
AfaI GTAC 3 cut(s) 26, 217, 237
AgsI TTSAA 2 cut(s) 74, 175
AluBI AGCT 1 cut(s) 39
AluI AGCT 1 cut(s) 39
Alw21I GWGCWC 1 cut(s) 35
Alw44I GTGCAC 1 cut(s) 31
AoxI GGCC 1 cut(s) 81
ApaLI GTGCAC 1 cut(s) 31
ApeKI GCWGC 2 cut(s) 134, 220
ApoI RAATTY 1 cut(s) 195
AspS9I GGNCC 1 cut(s) 82
AsuNHI GCTAGC 1 cut(s) 185
BaeGI GKGCMC 1 cut(s) 35
BanII GRGCYC 1 cut(s) 261
BarI GAAGNNNNNNTAC 2 cut(s) 208, 240
Bbv12I GWGCWC 1 cut(s) 35
BbvI GCAGC 2 cut(s) 146, 207
BccI CCATC 1 cut(s) 129
BcgI CGANNNNNNTGC 2 cut(s) 98, 132
BclI TGATCA 1 cut(s) 3
BfaI CTAG 1 cut(s) 186
BfmI CTRYAG 1 cut(s) 159
BglI GCCNNNNNGGC 1 cut(s) 229
BisI GCNGC 2 cut(s) 135, 221
BlpI GCTNAGC 1 cut(s) 207
BlsI GCNGC 2 cut(s) 136, 222
BmgT120I GGNCC 1 cut(s) 82
BmtI GCTAGC 1 cut(s) 189
BplI GAGNNNNNCTC 2 cut(s) 52, 84
Bpu1102I GCTNAGC 1 cut(s) 207
BseMII CTCAG 2 cut(s) 164, 198
BseSI GKGCMC 1 cut(s) 35
BseXI GCAGC 2 cut(s) 146, 207
BshFI GGCC 1 cut(s) 83
BsiHKAI GWGCWC 1 cut(s) 35
BsiWI CGTACG 1 cut(s) 215
BsnI GGCC 1 cut(s) 83
Bsp1286I GDGCHC 2 cut(s) 35, 261
Bsp143I GATC 1 cut(s) 3
Bsp1720I GCTNAGC 1 cut(s) 207
BspANI GGCC 1 cut(s) 83
BspCNI CTCAG 2 cut(s) 163, 199
BspOI GCTAGC 1 cut(s) 189
BssMI GATC 1 cut(s) 3
Bst4CI ACNGT 2 cut(s) 54, 265
BstC8I GCNNGC 3 cut(s) 48, 187, 191
BstDEI CTNAG 3 cut(s) 103, 150, 207
BstKTI GATC 1 cut(s) 6
BstMBI GATC 1 cut(s) 3
BstMWI GCNNNNNNNGC 3 cut(s) 155, 217, 229
BstSFI CTRYAG 1 cut(s) 159
BstSLI GKGCMC 1 cut(s) 35
BstV1I GCAGC 2 cut(s) 146, 207
BsuRI GGCC 1 cut(s) 83
BtgZI GCGATG 1 cut(s) 107
BtsIMutI CAGTG 1 cut(s) 270
Cac8I GCNNGC 3 cut(s) 48, 187, 191
Cfr13I GGNCC 1 cut(s) 82
Csp6I GTAC 3 cut(s) 25, 216, 236
CviQI GTAC 3 cut(s) 25, 216, 236
DdeI CTNAG 3 cut(s) 103, 150, 207
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
Eco24I GRGCYC 1 cut(s) 261
EcoT38I GRGCYC 1 cut(s) 261
FaiI YATR 2 cut(s) 111, 180
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 2 cut(s) 135, 221
FriOI GRGCYC 1 cut(s) 261
Fsp4HI GCNGC 2 cut(s) 135, 221
FspBI CTAG 1 cut(s) 186
GluI GCNGC 2 cut(s) 135, 221
HaeIII GGCC 1 cut(s) 83
HinfI GANTC 1 cut(s) 61
Hpy166II GTNNAC 1 cut(s) 33
Hpy188III TCNNGA 2 cut(s) 17, 71
Hpy8I GTNNAC 1 cut(s) 33
HpyAV CCTTC 1 cut(s) 234
HpyCH4III ACNGT 2 cut(s) 54, 265
HpyCH4IV ACGT 2 cut(s) 96, 214
HpyCH4V TGCA 3 cut(s) 33, 50, 134
HpyF10VI GCNNNNNNNGC 3 cut(s) 155, 217, 229
HpyF3I CTNAG 3 cut(s) 103, 150, 207
HpySE526I ACGT 2 cut(s) 96, 214
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 1 cut(s) 3
LpnPI CCDG 4 cut(s) 65, 147, 255, 264
Lsp1109I GCAGC 2 cut(s) 146, 207
MaeI CTAG 1 cut(s) 186
MaeII ACGT 2 cut(s) 96, 214
MaeIII GTNAC 1 cut(s) 166
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MhlI GDGCHC 2 cut(s) 35, 261
MluCI AATT 4 cut(s) 11, 86, 195, 277
MlyI GAGTC 1 cut(s) 70
MnlI CCTC 2 cut(s) 126, 262
MseI TTAA 1 cut(s) 276
MwoI GCNNNNNNNGC 3 cut(s) 155, 217, 229
NdeII GATC 1 cut(s) 3
NheI GCTAGC 1 cut(s) 185
PcsI WCGNNNNNNNCGW 1 cut(s) 224
Pfl23II CGTACG 1 cut(s) 215
PkrI GCNGC 2 cut(s) 136, 222
PleI GAGTC 1 cut(s) 69
PpsI GAGTC 1 cut(s) 69
PspLI CGTACG 1 cut(s) 215
PspPI GGNCC 1 cut(s) 82
RsaI GTAC 3 cut(s) 26, 217, 237
RsaNI GTAC 3 cut(s) 25, 216, 236
SaqAI TTAA 1 cut(s) 276
SatI GCNGC 2 cut(s) 135, 221
Sau3AI GATC 1 cut(s) 3
Sau96I GGNCC 1 cut(s) 82
SchI GAGTC 1 cut(s) 70
SduI GDGCHC 2 cut(s) 35, 261
SetI ASST 5 cut(s) 41, 99, 173, 217, 244
SfcI CTRYAG 1 cut(s) 159
Sse9I AATT 4 cut(s) 11, 86, 195, 277
SspMI CTAG 1 cut(s) 186
TaaI ACNGT 2 cut(s) 54, 265
TaiI ACGT 2 cut(s) 99, 217
TasI AATT 4 cut(s) 11, 86, 195, 277
TatI WGTACW 1 cut(s) 24
Tru1I TTAA 1 cut(s) 276
Tru9I TTAA 1 cut(s) 276
TscAI CASTG 1 cut(s) 270
TseI GCWGC 2 cut(s) 134, 220
TspDTI ATGAA 1 cut(s) 156
TspRI CASTG 1 cut(s) 270
VneI GTGCAC 1 cut(s) 31
XapI RAATTY 1 cut(s) 195
XspI CTAG 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.