pycom461g00260

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
tig00000461
OG0000160
Physical Location & Seq
Reverse (-)
221312 .. 221587
276 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom461g00260.1

Sequence Viewer

Length: 276 bp
ATGAGATGGTTAATCTGGAGACATGGCTACCACTGGCCTGGTATCGAGAAAGATTGTAATCAGTACGCTAAAGGATGCAAGGCTTGCCAGATCCATGGACCCATTCAAAGGGCCTCGGCTGCTGCTTTATACCCCATAGTCAAACCATGGCCATTCAGAGGATGGGCAGTTGACTTGATTGGAAAAATTTATCCGCCATCAAGTAAGCAACATAACATACATTTATACTTGTTGCGACTGATTATTTCACCAAGTGAGCTGAAGCCATACCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

92

Amino Acids

10.59

Weight (kDa)

9.72

Isoelectric Point (pI)

52.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Integrase_H2C2 PF17921 7 - 32 7.6e-06 Integrase zinc binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000160)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11612 FvH4_2g25851 FvH4_3g22802 FvH4_3g22805 FvH4_3g31361 FvH4_3g31382 FvH4_4g05272 FvH4_4g05273 FvH4_4g14567 FvH4_4g15161 FvH4_5g22540 FvH4_6g13113 FvH4_6g31923 FvH4_6g31924 FvH4_6g33651 FvH4_6g45122 FvH4_7g03662
pyrus_communis pycom01g04240 pycom01g24010 pycom02g18210 pycom02g19420 pycom05g06510 pycom09g15750 pycom09g18940 pycom12g02580 pycom12g03100 pycom12g08310 pycom13g22710 pycom13g28060 pycom16g18340 pycom16g18350 pycom16g24880 pycom16g26240 pycom461g00260 pycom520g00980 pycom520g01320
rosa_chinensis RchiOBHm_Chr1g0320731 RchiOBHm_Chr2g0102771 RchiOBHm_Chr3g0462151 RchiOBHm_Chr5g0038141 RchiOBHm_Chr5g0069371 RchiOBHm_Chr7g0239101
rosa_multiflora Rmu_co8038252.1_g000001 Rmu_co8138412.1_g000001 Rmu_co8331087.1_g000001 Rmu_co8479311.1_g000001 Rmu_sc0000112.1_g000018 Rmu_sc0000346.1_g000012 Rmu_sc0002102.1_g000002 Rmu_sc0003505.1_g000013 Rmu_sc0004249.1_g000007 Rmu_sc0004448.1_g000010 Rmu_sc0004594.1_g000011 Rmu_sc0004915.1_g000010 Rmu_sc0008019.1_g000019 Rmu_sc0008303.1_g000001 Rmu_sc0008355.1_g000005 Rmu_sc0009253.1_g000018 Rmu_sc0010211.1_g000002 Rmu_sc0010252.1_g000009 Rmu_sc0011534.1_g000008 Rmu_sc0014811.1_g000009 Rmu_sc0019475.1_g000001 Rmu_sc0024897.1_g000001 Rmu_sc0024898.1_g000001 Rmu_sc0031791.1_g000001 Rmu_sc0038715.1_g000001
rosa_roxburghii Rroxscaffold_165G00436940 Rroxscaffold_174G00435270 Rroxscaffold_177G00434330 Rroxscaffold_177G00434340 Rroxscaffold_177G00434350 Rroxscaffold_1G00002160 Rroxscaffold_1G00025260 Rroxscaffold_1G00042950 Rroxscaffold_1G00068010 Rroxscaffold_2G00107530 Rroxscaffold_3G00221190 Rroxscaffold_3G00221520 Rroxscaffold_3G00223200 Rroxscaffold_4G00322230 Rroxscaffold_4G00331810 Rroxscaffold_5G00385150 Rroxscaffold_5G00387510 Rroxscaffold_6G00410520 Rroxscaffold_6G00423360 Rroxscaffold_6G00423370 Rroxscaffold_6G00429210 Rroxscaffold_7G00158300 Rroxscaffold_7G00163480 Rroxscaffold_7G00171410 Rroxscaffold_7G00178940 Rroxscaffold_7G00199480 Rroxscaffold_7G00205630 Rroxscaffold_7G00207440
rosa_rugosa Rorug01G0056400 Rorug04G0063900 Rorug05G0251400 Rorug07G0221900
rosa_samantha Rh1DG169400 Rh2AG292900 Rh2DG519200 Rh4DG260600 Rh5AG042600 Rh6BG117500
rosa_wichuraiana Rw0G001900 Rw0G005150 Rw0G006380 Rw0G015140 Rw0G016320 Rw0G019440 Rw0G019840 Rw0G023740 Rw1G001590 Rw1G002180 Rw1G003560 Rw1G004280 Rw1G006110 Rw1G006680 Rw1G007920 Rw1G008480 Rw1G009120 Rw1G010310 Rw1G014900 Rw1G019650 Rw1G022070 Rw1G022170 Rw1G041570 Rw2G002740 Rw2G005760 Rw2G032370 Rw2G046770 Rw2G050600 Rw2G051420 Rw3G015930 Rw3G016280 Rw3G019580 Rw3G028420 Rw4G003430 Rw4G005350 Rw4G007530 Rw4G008150 Rw4G009580 Rw4G010250 Rw4G015800 Rw4G017000 Rw4G017910 Rw4G018510 Rw4G019700 Rw4G031010 Rw5G012650 Rw5G020140 Rw5G022060 Rw5G034420 Rw5G035560 Rw5G043010 Rw5G046750 Rw5G047340 Rw5G049500 Rw6G001390 Rw6G002210 Rw6G004530 Rw6G004770 Rw6G005100 Rw6G005890 Rw6G011860 Rw6G014680 Rw6G019480 Rw6G028970 Rw6G033800 Rw7G013050 Rw7G014800 Rw7G025760 Rw7G025850 Rw7G026730 Rw7G026870 Rw7G036330 Rw7G036430 Rw7G039320 Rw7G039510 Rw7G039560 Rw7G041370 Rw7G042050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 194
AclWI GGATC 1 cut(s) 85
AcoI YGGCCR 1 cut(s) 149
AcsI RAATTY 1 cut(s) 186
AdeI CACNNNGTG 1 cut(s) 254
AfaI GTAC 1 cut(s) 65
AfiI CCNNNNNNNGG 2 cut(s) 108, 158
AgsI TTSAA 1 cut(s) 107
AjnI CCWGG 1 cut(s) 37
AluBI AGCT 1 cut(s) 259
AluI AGCT 1 cut(s) 259
Alw26I GTCTC 1 cut(s) 13
AlwI GGATC 1 cut(s) 85
AoxI GGCC 3 cut(s) 35, 111, 149
ApeKI GCWGC 2 cut(s) 119, 122
ApoI RAATTY 1 cut(s) 186
AspS9I GGNCC 2 cut(s) 98, 111
AsuHPI GGTGA 1 cut(s) 240
AvaII GGWCC 1 cut(s) 98
BalI TGGCCA 1 cut(s) 151
BbvI GCAGC 2 cut(s) 106, 109
BccI CCATC 2 cut(s) 156, 205
BciT130I CCWGG 1 cut(s) 39
BcoDI GTCTC 1 cut(s) 13
BisI GCNGC 2 cut(s) 120, 123
BlsI GCNGC 2 cut(s) 121, 124
Bme1390I CCNGG 1 cut(s) 39
Bme18I GGWCC 1 cut(s) 98
BmgT120I GGNCC 2 cut(s) 98, 111
BmiI GGNNCC 1 cut(s) 100
BmrFI CCNGG 1 cut(s) 39
BmsI GCATC 1 cut(s) 65
BpmI CTGGAG 1 cut(s) 37
BsaBI GATNNNNATC 1 cut(s) 57
BsaJI CCNNGG 3 cut(s) 94, 114, 146
Bsc4I CCNNNNNNNGG 2 cut(s) 108, 158
Bse1I ACTGG 1 cut(s) 38
Bse8I GATNNNNATC 1 cut(s) 57
BseBI CCWGG 1 cut(s) 39
BseDI CCNNGG 3 cut(s) 94, 114, 146
BseGI GGATG 2 cut(s) 80, 167
BseJI GATNNNNATC 1 cut(s) 57
BseLI CCNNNNNNNGG 2 cut(s) 108, 158
BseNI ACTGG 1 cut(s) 38
BseXI GCAGC 2 cut(s) 106, 109
BshFI GGCC 3 cut(s) 37, 113, 151
BslI CCNNNNNNNGG 2 cut(s) 108, 158
BsmAI GTCTC 1 cut(s) 13
BsnI GGCC 3 cut(s) 37, 113, 151
Bsp143I GATC 1 cut(s) 90
Bsp19I CCATGG 2 cut(s) 94, 146
BspACI CCGC 1 cut(s) 194
BspANI GGCC 3 cut(s) 37, 113, 151
BspLI GGNNCC 1 cut(s) 100
BspPI GGATC 1 cut(s) 85
BsrI ACTGG 1 cut(s) 38
BssECI CCNNGG 3 cut(s) 94, 114, 146
BssMI GATC 1 cut(s) 90
BssT1I CCWWGG 2 cut(s) 94, 146
Bst2UI CCWGG 1 cut(s) 39
BstAPI GCANNNNNTGC 1 cut(s) 84
BstC8I GCNNGC 1 cut(s) 85
BstDSI CCRYGG 2 cut(s) 94, 146
BstF5I GGATG 2 cut(s) 80, 167
BstKTI GATC 1 cut(s) 93
BstMAI GTCTC 1 cut(s) 13
BstMBI GATC 1 cut(s) 90
BstMWI GCNNNNNNNGC 2 cut(s) 84, 119
BstNI CCWGG 1 cut(s) 39
BstSCI CCNGG 1 cut(s) 37
BstV1I GCAGC 2 cut(s) 106, 109
BstX2I RGATCY 1 cut(s) 90
BstXI CCANNNNNNTGG 2 cut(s) 38, 95
BstYI RGATCY 1 cut(s) 90
BsuRI GGCC 3 cut(s) 37, 113, 151
BtgI CCRYGG 2 cut(s) 94, 146
BtsCI GGATG 2 cut(s) 80, 167
BtsIMutI CAGTG 1 cut(s) 31
Cac8I GCNNGC 1 cut(s) 85
Cfr13I GGNCC 2 cut(s) 98, 111
Csp6I GTAC 1 cut(s) 64
CviAII CATG 3 cut(s) 23, 95, 147
CviJI RGCY 8 cut(s) 27, 37, 83, 113, 119, 151, 259, 265
CviKI_1 RGCY 8 cut(s) 27, 37, 83, 113, 119, 151, 259, 265
CviQI GTAC 1 cut(s) 64
DpnI GATC 1 cut(s) 92
DpnII GATC 1 cut(s) 90
DraIII CACNNNGTG 1 cut(s) 254
EaeI YGGCCR 1 cut(s) 149
EciI GGCGGA 1 cut(s) 183
Eco130I CCWWGG 2 cut(s) 94, 146
Eco47I GGWCC 1 cut(s) 98
EcoO109I RGGNCCY 1 cut(s) 111
EcoRII CCWGG 1 cut(s) 37
EcoT14I CCWWGG 2 cut(s) 94, 146
ErhI CCWWGG 2 cut(s) 94, 146
FaeI CATG 3 cut(s) 26, 98, 150
FaiI YATR 9 cut(s) 24, 96, 130, 137, 148, 213, 218, 226, 268
FatI CATG 3 cut(s) 22, 94, 146
Fnu4HI GCNGC 2 cut(s) 120, 123
FokI GGATG 2 cut(s) 87, 174
Fsp4HI GCNGC 2 cut(s) 120, 123
GluI GCNGC 2 cut(s) 120, 123
GsuI CTGGAG 1 cut(s) 37
HaeIII GGCC 3 cut(s) 37, 113, 151
Hin1II CATG 3 cut(s) 26, 98, 150
HincII GTYRAC 1 cut(s) 172
HindII GTYRAC 1 cut(s) 172
HphI GGTGA 1 cut(s) 240
Hpy166II GTNNAC 1 cut(s) 172
Hpy188I TCNGA 1 cut(s) 158
Hpy188III TCNNGA 2 cut(s) 16, 46
Hpy8I GTNNAC 1 cut(s) 172
HpyCH4V TGCA 1 cut(s) 78
HpyF10VI GCNNNNNNNGC 2 cut(s) 84, 119
Hsp92II CATG 3 cut(s) 26, 98, 150
Kzo9I GATC 1 cut(s) 90
LpnPI CCDG 4 cut(s) 19, 24, 51, 101
Lsp1109I GCAGC 2 cut(s) 106, 109
LweI GCATC 1 cut(s) 65
MalI GATC 1 cut(s) 92
MboI GATC 1 cut(s) 90
MflI RGATCY 1 cut(s) 90
MlsI TGGCCA 1 cut(s) 151
MluCI AATT 1 cut(s) 186
MluNI TGGCCA 1 cut(s) 151
MnlI CCTC 2 cut(s) 124, 152
Mox20I TGGCCA 1 cut(s) 151
MscI TGGCCA 1 cut(s) 151
MseI TTAA 1 cut(s) 11
Msp20I TGGCCA 1 cut(s) 151
MspR9I CCNGG 1 cut(s) 39
MvaI CCWGG 1 cut(s) 39
MwoI GCNNNNNNNGC 2 cut(s) 84, 119
NcoI CCATGG 2 cut(s) 94, 146
NdeII GATC 1 cut(s) 90
NlaIII CATG 3 cut(s) 26, 98, 150
NlaIV GGNNCC 1 cut(s) 100
NmeAIII GCCGAG 1 cut(s) 95
PkrI GCNGC 2 cut(s) 121, 124
Psp6I CCWGG 1 cut(s) 37
PspGI CCWGG 1 cut(s) 37
PspN4I GGNNCC 1 cut(s) 100
PspPI GGNCC 2 cut(s) 98, 111
PsuI RGATCY 1 cut(s) 90
RsaI GTAC 1 cut(s) 65
RsaNI GTAC 1 cut(s) 64
SaqAI TTAA 1 cut(s) 11
SatI GCNGC 2 cut(s) 120, 123
Sau3AI GATC 1 cut(s) 90
Sau96I GGNCC 2 cut(s) 98, 111
ScrFI CCNGG 1 cut(s) 39
SetI ASST 1 cut(s) 261
SfaNI GCATC 1 cut(s) 65
SinI GGWCC 1 cut(s) 98
Sse9I AATT 1 cut(s) 186
SsiI CCGC 1 cut(s) 194
StyD4I CCNGG 1 cut(s) 37
StyI CCWWGG 2 cut(s) 94, 146
TaqI TCGA 1 cut(s) 45
TasI AATT 1 cut(s) 186
Tru1I TTAA 1 cut(s) 11
Tru9I TTAA 1 cut(s) 11
TscAI CASTG 1 cut(s) 38
TseI GCWGC 2 cut(s) 119, 122
TspRI CASTG 1 cut(s) 38
VpaK11BI GGWCC 1 cut(s) 98
XapI RAATTY 1 cut(s) 186
XcmI CCANNNNNNNNNTGG 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.