Rw2G051420

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000160
Physical Location & Seq
Forward (+)
79123921 .. 79124451
531 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G051420.1

Sequence Viewer

Length: 489 bp
ATGGGAGGCCCTGTCGAGGAGCTTGTCAATGATTTTGGCATCCAGTTCATCCACAGCACCCCATATTACGCTCAGTCCAATGGTCAAGCGGAGGCTAGCAACAAGACAATCATTACCTTACTAAAGAAGATGCTGGTAGAGAACCCTCGACAATGGCACGACACTTTGTATGAGACACTTTGGGCTTATCGCACTTCTAAGCGGAATCCCACCGCGACGACGCCATACGCACTCATGTTTGGTCATTACGCTGTCTTACCATTAGAAATTAATGTTCATTCCCTACGCGCAATGTGGCAGGAACACGAAGATTTAGGCGAGCAGCGCTTGGTGGCTTTGGACAATTTGGTAATGGAAAAACAGCGTATCGCCCGTGCTTATGATAAGCGGACGCGTGGTCGTAGTTACAAAGAAGGCGACCTTGTTTGGAAGGCTGTTTTACCCTTTGGCGAAAAGTTAACAGGCTGCGGTAAATGGACGCCGCGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

162

Amino Acids

18.71

Weight (kDa)

8.97

Isoelectric Point (pI)

40.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000160)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11612 FvH4_2g25851 FvH4_3g22802 FvH4_3g22805 FvH4_3g31361 FvH4_3g31382 FvH4_4g05272 FvH4_4g05273 FvH4_4g14567 FvH4_4g15161 FvH4_5g22540 FvH4_6g13113 FvH4_6g31923 FvH4_6g31924 FvH4_6g33651 FvH4_6g45122 FvH4_7g03662
pyrus_communis pycom01g04240 pycom01g24010 pycom02g18210 pycom02g19420 pycom05g06510 pycom09g15750 pycom09g18940 pycom12g02580 pycom12g03100 pycom12g08310 pycom13g22710 pycom13g28060 pycom16g18340 pycom16g18350 pycom16g24880 pycom16g26240 pycom461g00260 pycom520g00980 pycom520g01320
rosa_chinensis RchiOBHm_Chr1g0320731 RchiOBHm_Chr2g0102771 RchiOBHm_Chr3g0462151 RchiOBHm_Chr5g0038141 RchiOBHm_Chr5g0069371 RchiOBHm_Chr7g0239101
rosa_multiflora Rmu_co8038252.1_g000001 Rmu_co8138412.1_g000001 Rmu_co8331087.1_g000001 Rmu_co8479311.1_g000001 Rmu_sc0000112.1_g000018 Rmu_sc0000346.1_g000012 Rmu_sc0002102.1_g000002 Rmu_sc0003505.1_g000013 Rmu_sc0004249.1_g000007 Rmu_sc0004448.1_g000010 Rmu_sc0004594.1_g000011 Rmu_sc0004915.1_g000010 Rmu_sc0008019.1_g000019 Rmu_sc0008303.1_g000001 Rmu_sc0008355.1_g000005 Rmu_sc0009253.1_g000018 Rmu_sc0010211.1_g000002 Rmu_sc0010252.1_g000009 Rmu_sc0011534.1_g000008 Rmu_sc0014811.1_g000009 Rmu_sc0019475.1_g000001 Rmu_sc0024897.1_g000001 Rmu_sc0024898.1_g000001 Rmu_sc0031791.1_g000001 Rmu_sc0038715.1_g000001
rosa_roxburghii Rroxscaffold_165G00436940 Rroxscaffold_174G00435270 Rroxscaffold_177G00434330 Rroxscaffold_177G00434340 Rroxscaffold_177G00434350 Rroxscaffold_1G00002160 Rroxscaffold_1G00025260 Rroxscaffold_1G00042950 Rroxscaffold_1G00068010 Rroxscaffold_2G00107530 Rroxscaffold_3G00221190 Rroxscaffold_3G00221520 Rroxscaffold_3G00223200 Rroxscaffold_4G00322230 Rroxscaffold_4G00331810 Rroxscaffold_5G00385150 Rroxscaffold_5G00387510 Rroxscaffold_6G00410520 Rroxscaffold_6G00423360 Rroxscaffold_6G00423370 Rroxscaffold_6G00429210 Rroxscaffold_7G00158300 Rroxscaffold_7G00163480 Rroxscaffold_7G00171410 Rroxscaffold_7G00178940 Rroxscaffold_7G00199480 Rroxscaffold_7G00205630 Rroxscaffold_7G00207440
rosa_rugosa Rorug01G0056400 Rorug04G0063900 Rorug05G0251400 Rorug07G0221900
rosa_samantha Rh1DG169400 Rh2AG292900 Rh2DG519200 Rh4DG260600 Rh5AG042600 Rh6BG117500
rosa_wichuraiana Rw0G001900 Rw0G005150 Rw0G006380 Rw0G015140 Rw0G016320 Rw0G019440 Rw0G019840 Rw0G023740 Rw1G001590 Rw1G002180 Rw1G003560 Rw1G004280 Rw1G006110 Rw1G006680 Rw1G007920 Rw1G008480 Rw1G009120 Rw1G010310 Rw1G014900 Rw1G019650 Rw1G022070 Rw1G022170 Rw1G041570 Rw2G002740 Rw2G005760 Rw2G032370 Rw2G046770 Rw2G050600 Rw2G051420 Rw3G015930 Rw3G016280 Rw3G019580 Rw3G028420 Rw4G003430 Rw4G005350 Rw4G007530 Rw4G008150 Rw4G009580 Rw4G010250 Rw4G015800 Rw4G017000 Rw4G017910 Rw4G018510 Rw4G019700 Rw4G031010 Rw5G012650 Rw5G020140 Rw5G022060 Rw5G034420 Rw5G035560 Rw5G043010 Rw5G046750 Rw5G047340 Rw5G049500 Rw6G001390 Rw6G002210 Rw6G004530 Rw6G004770 Rw6G005100 Rw6G005890 Rw6G011860 Rw6G014680 Rw6G019480 Rw6G028970 Rw6G033800 Rw7G013050 Rw7G014800 Rw7G025760 Rw7G025850 Rw7G026730 Rw7G026870 Rw7G036330 Rw7G036430 Rw7G039320 Rw7G039510 Rw7G039560 Rw7G041370 Rw7G042050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 4 cut(s) 215, 288, 394, 484
AciI CCGC 6 cut(s) 89, 202, 213, 388, 468, 482
AcyI GRCGYC 2 cut(s) 221, 479
AfeI AGCGCT 1 cut(s) 326
AfiI CCNNNNNNNGG 1 cut(s) 16
AflIII ACRYGT 1 cut(s) 392
AhdI GACNNNNNGTC 1 cut(s) 396
AluBI AGCT 1 cut(s) 22
AluI AGCT 1 cut(s) 22
Alw26I GTCTC 1 cut(s) 167
Aor51HI AGCGCT 1 cut(s) 326
AoxI GGCC 1 cut(s) 7
ApeKI GCWGC 2 cut(s) 322, 465
AseI ATTAAT 1 cut(s) 270
AspLEI GCGC 2 cut(s) 290, 327
AspS9I GGNCC 1 cut(s) 8
AsuNHI GCTAGC 1 cut(s) 95
BbvI GCAGC 2 cut(s) 334, 452
BcoDI GTCTC 1 cut(s) 167
BfaI CTAG 1 cut(s) 96
BfoI RGCGCY 1 cut(s) 328
BisI GCNGC 3 cut(s) 323, 466, 482
BlsI GCNGC 3 cut(s) 324, 467, 483
BmeRI GACNNNNNGTC 1 cut(s) 396
BmgT120I GGNCC 1 cut(s) 8
BmsI GCATC 2 cut(s) 48, 120
BmtI GCTAGC 1 cut(s) 99
BsaHI GRCGYC 2 cut(s) 221, 479
BsaXI ACNNNNNCTCC 1 cut(s) 27
Bsc4I CCNNNNNNNGG 1 cut(s) 16
Bse1I ACTGG 1 cut(s) 43
Bse3DI GCAATG 1 cut(s) 297
BseGI GGATG 2 cut(s) 39, 48
BseLI CCNNNNNNNGG 1 cut(s) 16
BseMI GCAATG 1 cut(s) 297
BseMII CTCAG 1 cut(s) 86
BseNI ACTGG 1 cut(s) 43
BseRI GAGGAG 1 cut(s) 32
BseXI GCAGC 2 cut(s) 334, 452
Bsh1236I CGCG 4 cut(s) 215, 288, 394, 484
BshFI GGCC 1 cut(s) 9
BslI CCNNNNNNNGG 1 cut(s) 16
BsmAI GTCTC 1 cut(s) 167
BsnI GGCC 1 cut(s) 9
BspACI CCGC 6 cut(s) 89, 202, 213, 388, 468, 482
BspANI GGCC 1 cut(s) 9
BspCNI CTCAG 1 cut(s) 85
BspFNI CGCG 4 cut(s) 215, 288, 394, 484
BspOI GCTAGC 1 cut(s) 99
BsrDI GCAATG 1 cut(s) 297
BsrI ACTGG 1 cut(s) 43
BssNI GRCGYC 2 cut(s) 221, 479
BstACI GRCGYC 2 cut(s) 221, 479
BstC8I GCNNGC 2 cut(s) 97, 320
BstDEI CTNAG 2 cut(s) 72, 198
BstF5I GGATG 2 cut(s) 39, 48
BstFNI CGCG 4 cut(s) 215, 288, 394, 484
BstH2I RGCGCY 1 cut(s) 328
BstHHI GCGC 2 cut(s) 290, 327
BstMAI GTCTC 1 cut(s) 167
BstMWI GCNNNNNNNGC 1 cut(s) 324
BstUI CGCG 4 cut(s) 215, 288, 394, 484
BstV1I GCAGC 2 cut(s) 334, 452
BsuRI GGCC 1 cut(s) 9
BtsCI GGATG 2 cut(s) 39, 48
Cac8I GCNNGC 2 cut(s) 97, 320
CfoI GCGC 2 cut(s) 290, 327
Cfr13I GGNCC 1 cut(s) 8
CseI GACGC 2 cut(s) 229, 400
CviAII CATG 1 cut(s) 235
CviJI RGCY 7 cut(s) 9, 22, 95, 185, 335, 434, 465
CviKI_1 RGCY 7 cut(s) 9, 22, 95, 185, 335, 434, 465
DdeI CTNAG 2 cut(s) 72, 198
DriI GACNNNNNGTC 1 cut(s) 396
Eam1105I GACNNNNNGTC 1 cut(s) 396
Eco47III AGCGCT 1 cut(s) 326
EcoO109I RGGNCCY 1 cut(s) 8
FaeI CATG 1 cut(s) 238
FaiI YATR 5 cut(s) 64, 171, 226, 236, 381
FalI AAGNNNNNCTT 2 cut(s) 405, 437
FatI CATG 1 cut(s) 234
Fnu4HI GCNGC 3 cut(s) 323, 466, 482
FokI GGATG 2 cut(s) 26, 35
Fsp4HI GCNGC 3 cut(s) 323, 466, 482
FspBI CTAG 1 cut(s) 96
GlaI GCGC 2 cut(s) 289, 326
GluI GCNGC 3 cut(s) 323, 466, 482
HaeII RGCGCY 1 cut(s) 328
HaeIII GGCC 1 cut(s) 9
HgaI GACGC 2 cut(s) 229, 400
HhaI GCGC 2 cut(s) 290, 327
Hin1I GRCGYC 2 cut(s) 221, 479
Hin1II CATG 1 cut(s) 238
Hin6I GCGC 2 cut(s) 288, 325
HinP1I GCGC 2 cut(s) 288, 325
HincII GTYRAC 1 cut(s) 459
HindII GTYRAC 1 cut(s) 459
HinfI GANTC 1 cut(s) 205
HpaI GTTAAC 1 cut(s) 459
Hpy166II GTNNAC 1 cut(s) 459
Hpy8I GTNNAC 1 cut(s) 459
Hpy99I CGWCG 2 cut(s) 220, 223
HpyAV CCTTC 2 cut(s) 407, 424
HpyF10VI GCNNNNNNNGC 1 cut(s) 324
HpyF3I CTNAG 2 cut(s) 72, 198
Hsp92I GRCGYC 2 cut(s) 221, 479
Hsp92II CATG 1 cut(s) 238
HspAI GCGC 2 cut(s) 288, 325
KspAI GTTAAC 1 cut(s) 459
LmnI GCTCC 1 cut(s) 19
LpnPI CCDG 5 cut(s) 24, 56, 119, 284, 447
Lsp1109I GCAGC 2 cut(s) 334, 452
LweI GCATC 2 cut(s) 48, 120
MaeI CTAG 1 cut(s) 96
MaeIII GTNAC 1 cut(s) 404
MboII GAAGA 2 cut(s) 139, 320
MluCI AATT 2 cut(s) 267, 343
MluI ACGCGT 1 cut(s) 392
MnlI CCTC 3 cut(s) 10, 85, 156
MseI TTAA 2 cut(s) 270, 458
MvnI CGCG 4 cut(s) 215, 288, 394, 484
MwoI GCNNNNNNNGC 1 cut(s) 324
NheI GCTAGC 1 cut(s) 95
NlaIII CATG 1 cut(s) 238
PfeI GAWTC 1 cut(s) 205
PkrI GCNGC 3 cut(s) 324, 467, 483
PshBI ATTAAT 1 cut(s) 270
PspPI GGNCC 1 cut(s) 8
SaqAI TTAA 2 cut(s) 270, 458
SatI GCNGC 3 cut(s) 323, 466, 482
Sau96I GGNCC 1 cut(s) 8
SetI ASST 3 cut(s) 24, 119, 423
SfaNI GCATC 2 cut(s) 48, 120
Sse9I AATT 2 cut(s) 267, 343
SsiI CCGC 6 cut(s) 89, 202, 213, 388, 468, 482
SspMI CTAG 1 cut(s) 96
TaqI TCGA 2 cut(s) 15, 148
TasI AATT 2 cut(s) 267, 343
TauI GCSGC 1 cut(s) 484
TfiI GAWTC 1 cut(s) 205
Tru1I TTAA 2 cut(s) 270, 458
Tru9I TTAA 2 cut(s) 270, 458
TseI GCWGC 2 cut(s) 322, 465
TspDTI ATGAA 2 cut(s) 37, 266
VspI ATTAAT 1 cut(s) 270
XspI CTAG 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.