Rmu_sc0000346.1_g000012

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000346.1
OG0000160
Physical Location & Seq
Forward (+)
47313 .. 47762
450 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000346.1_g000012.1.cds

Sequence Viewer

Length: 450 bp
atggatttggagtatatccctcgcgagcgcaatttcgcggccaatgaacttgctcaattggctataggcattacattgaaatatggggttcgagagcgtattctgaaagtcgagcgtcacacgctgccttcatggctcgcgcggcctgaccttccggatgatccagtcgtcgtggtcctagaacctattgacgtctattggcgcattctgttgattgattacctcaaacgaccagattctaccgcagacagaaagattcgctttcttgccttaaattacttccttaggggtgaggagctgcgacgacgcgggaaagatggcatagacttccggcgtgtctatggccgcgaagcaaagcgattaatgcgcgaggcacacacaggaatatgcagagcacatcaagtaggacctaagatgcgctggctcattaggagacatggttattactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

149

Amino Acids

17.8

Weight (kDa)

10.04

Isoelectric Point (pI)

38.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000160)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11612 FvH4_2g25851 FvH4_3g22802 FvH4_3g22805 FvH4_3g31361 FvH4_3g31382 FvH4_4g05272 FvH4_4g05273 FvH4_4g14567 FvH4_4g15161 FvH4_5g22540 FvH4_6g13113 FvH4_6g31923 FvH4_6g31924 FvH4_6g33651 FvH4_6g45122 FvH4_7g03662
pyrus_communis pycom01g04240 pycom01g24010 pycom02g18210 pycom02g19420 pycom05g06510 pycom09g15750 pycom09g18940 pycom12g02580 pycom12g03100 pycom12g08310 pycom13g22710 pycom13g28060 pycom16g18340 pycom16g18350 pycom16g24880 pycom16g26240 pycom461g00260 pycom520g00980 pycom520g01320
rosa_chinensis RchiOBHm_Chr1g0320731 RchiOBHm_Chr2g0102771 RchiOBHm_Chr3g0462151 RchiOBHm_Chr5g0038141 RchiOBHm_Chr5g0069371 RchiOBHm_Chr7g0239101
rosa_multiflora Rmu_co8038252.1_g000001 Rmu_co8138412.1_g000001 Rmu_co8331087.1_g000001 Rmu_co8479311.1_g000001 Rmu_sc0000112.1_g000018 Rmu_sc0000346.1_g000012 Rmu_sc0002102.1_g000002 Rmu_sc0003505.1_g000013 Rmu_sc0004249.1_g000007 Rmu_sc0004448.1_g000010 Rmu_sc0004594.1_g000011 Rmu_sc0004915.1_g000010 Rmu_sc0008019.1_g000019 Rmu_sc0008303.1_g000001 Rmu_sc0008355.1_g000005 Rmu_sc0009253.1_g000018 Rmu_sc0010211.1_g000002 Rmu_sc0010252.1_g000009 Rmu_sc0011534.1_g000008 Rmu_sc0014811.1_g000009 Rmu_sc0019475.1_g000001 Rmu_sc0024897.1_g000001 Rmu_sc0024898.1_g000001 Rmu_sc0031791.1_g000001 Rmu_sc0038715.1_g000001
rosa_roxburghii Rroxscaffold_165G00436940 Rroxscaffold_174G00435270 Rroxscaffold_177G00434330 Rroxscaffold_177G00434340 Rroxscaffold_177G00434350 Rroxscaffold_1G00002160 Rroxscaffold_1G00025260 Rroxscaffold_1G00042950 Rroxscaffold_1G00068010 Rroxscaffold_2G00107530 Rroxscaffold_3G00221190 Rroxscaffold_3G00221520 Rroxscaffold_3G00223200 Rroxscaffold_4G00322230 Rroxscaffold_4G00331810 Rroxscaffold_5G00385150 Rroxscaffold_5G00387510 Rroxscaffold_6G00410520 Rroxscaffold_6G00423360 Rroxscaffold_6G00423370 Rroxscaffold_6G00429210 Rroxscaffold_7G00158300 Rroxscaffold_7G00163480 Rroxscaffold_7G00171410 Rroxscaffold_7G00178940 Rroxscaffold_7G00199480 Rroxscaffold_7G00205630 Rroxscaffold_7G00207440
rosa_rugosa Rorug01G0056400 Rorug04G0063900 Rorug05G0251400 Rorug07G0221900
rosa_samantha Rh1DG169400 Rh2AG292900 Rh2DG519200 Rh4DG260600 Rh5AG042600 Rh6BG117500
rosa_wichuraiana Rw0G001900 Rw0G005150 Rw0G006380 Rw0G015140 Rw0G016320 Rw0G019440 Rw0G019840 Rw0G023740 Rw1G001590 Rw1G002180 Rw1G003560 Rw1G004280 Rw1G006110 Rw1G006680 Rw1G007920 Rw1G008480 Rw1G009120 Rw1G010310 Rw1G014900 Rw1G019650 Rw1G022070 Rw1G022170 Rw1G041570 Rw2G002740 Rw2G005760 Rw2G032370 Rw2G046770 Rw2G050600 Rw2G051420 Rw3G015930 Rw3G016280 Rw3G019580 Rw3G028420 Rw4G003430 Rw4G005350 Rw4G007530 Rw4G008150 Rw4G009580 Rw4G010250 Rw4G015800 Rw4G017000 Rw4G017910 Rw4G018510 Rw4G019700 Rw4G031010 Rw5G012650 Rw5G020140 Rw5G022060 Rw5G034420 Rw5G035560 Rw5G043010 Rw5G046750 Rw5G047340 Rw5G049500 Rw6G001390 Rw6G002210 Rw6G004530 Rw6G004770 Rw6G005100 Rw6G005890 Rw6G011860 Rw6G014680 Rw6G019480 Rw6G028970 Rw6G033800 Rw7G013050 Rw7G014800 Rw7G025760 Rw7G025850 Rw7G026730 Rw7G026870 Rw7G036330 Rw7G036430 Rw7G039320 Rw7G039510 Rw7G039560 Rw7G041370 Rw7G042050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 195
AccII CGCG 7 cut(s) 24, 38, 140, 142, 309, 348, 369
AccIII TCCGGA 1 cut(s) 154
AciI CCGC 5 cut(s) 38, 142, 243, 309, 346
AclWI GGATC 1 cut(s) 155
AcoI YGGCCR 2 cut(s) 39, 343
AcyI GRCGYC 1 cut(s) 192
AgsI TTSAA 1 cut(s) 79
AluBI AGCT 1 cut(s) 298
AluI AGCT 1 cut(s) 298
Alw21I GWGCWC 1 cut(s) 397
Alw26I GTCTC 1 cut(s) 427
AlwI GGATC 1 cut(s) 155
Aor13HI TCCGGA 1 cut(s) 154
AoxI GGCC 3 cut(s) 39, 143, 343
ApeKI GCWGC 2 cut(s) 124, 298
AseI ATTAAT 1 cut(s) 362
AspLEI GCGC 5 cut(s) 30, 142, 204, 369, 420
AspS9I GGNCC 2 cut(s) 175, 407
AsuHPI GGTGA 1 cut(s) 302
AvaII GGWCC 2 cut(s) 175, 407
AxyI CCTNAGG 1 cut(s) 284
Bbv12I GWGCWC 1 cut(s) 397
BbvI GCAGC 2 cut(s) 111, 285
BccI CCATC 1 cut(s) 311
BcoDI GTCTC 1 cut(s) 427
BfaI CTAG 2 cut(s) 179, 448
BfmI CTRYAG 1 cut(s) 63
BglI GCCNNNNNGGC 1 cut(s) 133
BisI GCNGC 5 cut(s) 39, 125, 143, 299, 346
BlsI GCNGC 5 cut(s) 40, 126, 144, 300, 347
Bme18I GGWCC 2 cut(s) 175, 407
BmgT120I GGNCC 2 cut(s) 175, 407
BmsI GCATC 1 cut(s) 405
BsaHI GRCGYC 1 cut(s) 192
BsaWI WCCGGW 1 cut(s) 154
BsaXI ACNNNNNCTCC 1 cut(s) 424
Bse1I ACTGG 1 cut(s) 164
Bse21I CCTNAGG 1 cut(s) 284
BseAI TCCGGA 1 cut(s) 154
BseGI GGATG 1 cut(s) 163
BseNI ACTGG 1 cut(s) 164
BseRI GAGGAG 1 cut(s) 308
BseXI GCAGC 2 cut(s) 111, 285
Bsh1236I CGCG 7 cut(s) 24, 38, 140, 142, 309, 348, 369
BshFI GGCC 3 cut(s) 41, 145, 345
BsiHKAI GWGCWC 1 cut(s) 397
BsiSI CCGG 2 cut(s) 155, 331
BsmAI GTCTC 1 cut(s) 427
BsmI GAATGC 1 cut(s) 204
BsnI GGCC 3 cut(s) 41, 145, 345
Bsp1286I GDGCHC 1 cut(s) 397
Bsp13I TCCGGA 1 cut(s) 154
Bsp143I GATC 1 cut(s) 160
Bsp68I TCGCGA 1 cut(s) 24
BspACI CCGC 5 cut(s) 38, 142, 243, 309, 346
BspANI GGCC 3 cut(s) 41, 145, 345
BspEI TCCGGA 1 cut(s) 154
BspFNI CGCG 7 cut(s) 24, 38, 140, 142, 309, 348, 369
BspPI GGATC 1 cut(s) 155
BsrI ACTGG 1 cut(s) 164
BssMI GATC 1 cut(s) 160
BssNI GRCGYC 1 cut(s) 192
BstACI GRCGYC 1 cut(s) 192
BstC8I GCNNGC 3 cut(s) 26, 138, 422
BstDEI CTNAG 2 cut(s) 284, 411
BstF5I GGATG 1 cut(s) 163
BstFNI CGCG 7 cut(s) 24, 38, 140, 142, 309, 348, 369
BstHHI GCGC 5 cut(s) 30, 142, 204, 369, 420
BstKTI GATC 1 cut(s) 163
BstMAI GTCTC 1 cut(s) 427
BstMBI GATC 1 cut(s) 160
BstMWI GCNNNNNNNGC 5 cut(s) 59, 121, 133, 142, 364
BstSFI CTRYAG 1 cut(s) 63
BstUI CGCG 7 cut(s) 24, 38, 140, 142, 309, 348, 369
BstV1I GCAGC 2 cut(s) 111, 285
Bsu36I CCTNAGG 1 cut(s) 284
BsuRI GGCC 3 cut(s) 41, 145, 345
BtsCI GGATG 1 cut(s) 163
BtuMI TCGCGA 1 cut(s) 24
Cac8I GCNNGC 3 cut(s) 26, 138, 422
CfoI GCGC 5 cut(s) 30, 142, 204, 369, 420
Cfr13I GGNCC 2 cut(s) 175, 407
CseI GACGC 2 cut(s) 104, 315
CviAII CATG 2 cut(s) 132, 437
CviJI RGCY 7 cut(s) 41, 62, 136, 145, 298, 345, 424
CviKI_1 RGCY 7 cut(s) 41, 62, 136, 145, 298, 345, 424
DdeI CTNAG 2 cut(s) 284, 411
DpnI GATC 1 cut(s) 162
DpnII GATC 1 cut(s) 160
EaeI YGGCCR 2 cut(s) 39, 343
Eco47I GGWCC 2 cut(s) 175, 407
Eco81I CCTNAGG 1 cut(s) 284
EcoO109I RGGNCCY 1 cut(s) 407
FaeI CATG 2 cut(s) 135, 440
FaiI YATR 8 cut(s) 15, 65, 84, 133, 323, 342, 388, 438
FalI AAGNNNNNCTT 2 cut(s) 245, 277
FatI CATG 2 cut(s) 131, 436
FauI CCCGC 1 cut(s) 302
Fnu4HI GCNGC 5 cut(s) 39, 125, 143, 299, 346
FokI GGATG 1 cut(s) 170
Fsp4HI GCNGC 5 cut(s) 39, 125, 143, 299, 346
FspBI CTAG 2 cut(s) 179, 448
GlaI GCGC 5 cut(s) 29, 141, 203, 368, 419
GluI GCNGC 5 cut(s) 39, 125, 143, 299, 346
HaeIII GGCC 3 cut(s) 41, 145, 345
HapII CCGG 2 cut(s) 155, 331
HgaI GACGC 2 cut(s) 104, 315
HhaI GCGC 5 cut(s) 30, 142, 204, 369, 420
Hin1I GRCGYC 1 cut(s) 192
Hin1II CATG 2 cut(s) 135, 440
Hin6I GCGC 5 cut(s) 28, 140, 202, 367, 418
HinP1I GCGC 5 cut(s) 28, 140, 202, 367, 418
HinfI GANTC 2 cut(s) 236, 256
HpaII CCGG 2 cut(s) 155, 331
HphI GGTGA 1 cut(s) 302
Hpy188I TCNGA 1 cut(s) 105
Hpy188III TCNNGA 3 cut(s) 23, 92, 155
Hpy99I CGWCG 3 cut(s) 173, 306, 309
HpyAV CCTTC 2 cut(s) 138, 161
HpyCH4IV ACGT 1 cut(s) 192
HpyCH4V TGCA 1 cut(s) 390
HpyF10VI GCNNNNNNNGC 5 cut(s) 59, 121, 133, 142, 364
HpyF3I CTNAG 2 cut(s) 284, 411
HpySE526I ACGT 1 cut(s) 192
Hsp92I GRCGYC 1 cut(s) 192
Hsp92II CATG 2 cut(s) 135, 440
HspAI GCGC 5 cut(s) 28, 140, 202, 367, 418
Kpn2I TCCGGA 1 cut(s) 154
Kzo9I GATC 1 cut(s) 160
LmnI GCTCC 1 cut(s) 295
LpnPI CCDG 7 cut(s) 159, 168, 177, 246, 344, 366, 406
Lsp1109I GCAGC 2 cut(s) 111, 285
LweI GCATC 1 cut(s) 405
MaeI CTAG 2 cut(s) 179, 448
MaeII ACGT 1 cut(s) 192
MaeIII GTNAC 1 cut(s) 116
MalI GATC 1 cut(s) 162
MboI GATC 1 cut(s) 160
MfeI CAATTG 1 cut(s) 56
MhlI GDGCHC 1 cut(s) 397
MluCI AATT 3 cut(s) 31, 56, 274
MnlI CCTC 4 cut(s) 30, 233, 286, 364
MroI TCCGGA 1 cut(s) 154
MseI TTAA 2 cut(s) 272, 362
MspI CCGG 2 cut(s) 155, 331
MunI CAATTG 1 cut(s) 56
Mva1269I GAATGC 1 cut(s) 204
MvnI CGCG 7 cut(s) 24, 38, 140, 142, 309, 348, 369
MwoI GCNNNNNNNGC 5 cut(s) 59, 121, 133, 142, 364
NdeII GATC 1 cut(s) 160
NlaIII CATG 2 cut(s) 135, 440
NmuCI GTSAC 1 cut(s) 116
NruI TCGCGA 1 cut(s) 24
PctI GAATGC 1 cut(s) 204
PfeI GAWTC 2 cut(s) 236, 256
PkrI GCNGC 5 cut(s) 40, 126, 144, 300, 347
PpuMI RGGWCCY 1 cut(s) 407
PshBI ATTAAT 1 cut(s) 362
Psp5II RGGWCCY 1 cut(s) 407
PspPI GGNCC 2 cut(s) 175, 407
PspPPI RGGWCCY 1 cut(s) 407
RruI TCGCGA 1 cut(s) 24
SaqAI TTAA 2 cut(s) 272, 362
SatI GCNGC 5 cut(s) 39, 125, 143, 299, 346
Sau3AI GATC 1 cut(s) 160
Sau96I GGNCC 2 cut(s) 175, 407
SduI GDGCHC 1 cut(s) 397
SetI ASST 6 cut(s) 153, 187, 195, 225, 300, 412
SfaNI GCATC 1 cut(s) 405
SfcI CTRYAG 1 cut(s) 63
SinI GGWCC 2 cut(s) 175, 407
Sse9I AATT 3 cut(s) 31, 56, 274
SsiI CCGC 5 cut(s) 38, 142, 243, 309, 346
SspMI CTAG 2 cut(s) 179, 448
TaiI ACGT 1 cut(s) 195
TaqI TCGA 2 cut(s) 91, 111
TasI AATT 3 cut(s) 31, 56, 274
TauI GCSGC 3 cut(s) 41, 145, 348
TfiI GAWTC 2 cut(s) 236, 256
Tru1I TTAA 2 cut(s) 272, 362
Tru9I TTAA 2 cut(s) 272, 362
TseFI GTSAC 1 cut(s) 116
TseI GCWGC 2 cut(s) 124, 298
Tsp45I GTSAC 1 cut(s) 116
TspDTI ATGAA 2 cut(s) 60, 120
VpaK11BI GGWCC 2 cut(s) 175, 407
VspI ATTAAT 1 cut(s) 362
XspI CTAG 2 cut(s) 179, 448
ZraI GACGTC 1 cut(s) 193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.