Uncharacterized protein K02A2.6-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_1 | PF00078 | 899 - 1058 | 1.8e-32 | Reverse transcriptase (RNA-dependent DNA polymerase) |
| RT_RNaseH_2 | PF17919 | 1122 - 1220 | 2.4e-24 | RNase H-like domain found in reverse transcriptase |
| RT_RNaseH | PF17917 | 1150 - 1251 | 6.1e-25 | RNase H-like domain found in reverse transcriptase |
| RVT_3 | PF13456 | 1302 - 1421 | 1.4e-22 | Reverse transcriptase-like |
| Integrase_H2C2 | PF17921 | 1521 - 1576 | 1.8e-07 | Integrase zinc binding domain |
| rve | PF00665 | 1595 - 1692 | 4e-10 | Integrase core domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2853 |
| AatII | GACGTC | 2 cut(s) | 743, 2481 |
| Acc16I | TGCGCA | 1 cut(s) | 144 |
| Acc36I | ACCTGC | 1 cut(s) | 3861 |
| Acc65I | GGTACC | 1 cut(s) | 3180 |
| AccB1I | GGYRCC | 5 cut(s) | 433, 2869, 3180, 3433, 5417 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1490, 2122 |
| AccBSI | CCGCTC | 2 cut(s) | 1114, 3620 |
| AccI | GTMKAC | 3 cut(s) | 2916, 3027, 5241 |
| AccII | CGCG | 1 cut(s) | 2061 |
| AccIII | TCCGGA | 3 cut(s) | 323, 3099, 3713 |
| AclI | AACGTT | 2 cut(s) | 699, 4014 |
| AcoI | YGGCCR | 1 cut(s) | 4667 |
| AcsI | RAATTY | 9 cut(s) | 177, 238, 452, 1445, 1784, 1941, 2297, 3244, 5438 |
| AcuI | CTGAAG | 6 cut(s) | 1520, 2640, 2895, 2974, 4908, 5271 |
| AcvI | CACGTG | 1 cut(s) | 2018 |
| AcyI | GRCGYC | 4 cut(s) | 740, 2429, 2478, 5418 |
| AdeI | CACNNNGTG | 1 cut(s) | 3823 |
| AfeI | AGCGCT | 1 cut(s) | 2078 |
| AflII | CTTAAG | 1 cut(s) | 352 |
| AflIII | ACRYGT | 5 cut(s) | 829, 918, 1915, 2017, 3765 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 5375 |
| AleI | CACNNNNGTG | 1 cut(s) | 2195 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 5451, 5483 |
| Alw21I | GWGCWC | 8 cut(s) | 382, 2422, 2601, 2889, 3063, 4383, 4615, 5225 |
| Alw44I | GTGCAC | 1 cut(s) | 5221 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 638, 1841 |
| Ama87I | CYCGRG | 1 cut(s) | 590 |
| Aor13HI | TCCGGA | 3 cut(s) | 323, 3099, 3713 |
| Aor51HI | AGCGCT | 1 cut(s) | 2078 |
| ApaI | GGGCCC | 2 cut(s) | 539, 5540 |
| ApaLI | GTGCAC | 1 cut(s) | 5221 |
| ApeKI | GCWGC | 8 cut(s) | 104, 1480, 3812, 3895, 4262, 4571, 4637, 4859 |
| ApoI | RAATTY | 9 cut(s) | 177, 238, 452, 1445, 1784, 1941, 2297, 3244, 5438 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 4893 |
| Asp718I | GGTACC | 1 cut(s) | 3180 |
| AspLEI | GCGC | 4 cut(s) | 145, 1815, 2079, 5420 |
| AsuC2I | CCSGG | 2 cut(s) | 836, 2654 |
| AsuII | TTCGAA | 2 cut(s) | 4007, 4788 |
| AvaI | CYCGRG | 1 cut(s) | 590 |
| AvaII | GGWCC | 4 cut(s) | 309, 4527, 4625, 5020 |
| AxyI | CCTNAGG | 4 cut(s) | 462, 540, 1536, 5175 |
| BaeGI | GKGCMC | 4 cut(s) | 539, 1214, 5225, 5540 |
| BamHI | GGATCC | 2 cut(s) | 1074, 2395 |
| BanI | GGYRCC | 5 cut(s) | 433, 2869, 3180, 3433, 5417 |
| BanII | GRGCYC | 6 cut(s) | 539, 914, 2601, 2889, 4615, 5540 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 5244, 5276 |
| BbrPI | CACGTG | 1 cut(s) | 2018 |
| BbsI | GAAGAC | 6 cut(s) | 272, 2283, 2473, 2883, 3855, 5551 |
| Bbv12I | GWGCWC | 8 cut(s) | 382, 2422, 2601, 2889, 3063, 4383, 4615, 5225 |
| BbvCI | CCTCAGC | 2 cut(s) | 881, 2391 |
| BbvI | GCAGC | 8 cut(s) | 91, 1492, 3824, 3907, 4274, 4583, 4649, 4846 |
| BciVI | GTATCC | 1 cut(s) | 1175 |
| BclI | TGATCA | 3 cut(s) | 3, 1744, 4035 |
| BcnI | CCSGG | 2 cut(s) | 836, 2654 |
| BfaI | CTAG | 6 cut(s) | 183, 2039, 3602, 3918, 4449, 5267 |
| BfmI | CTRYAG | 4 cut(s) | 2449, 2734, 5076, 5191 |
| BfoI | RGCGCY | 2 cut(s) | 2080, 5421 |
| BfrI | CTTAAG | 1 cut(s) | 352 |
| BfuAI | ACCTGC | 1 cut(s) | 3861 |
| BfuI | GTATCC | 1 cut(s) | 1175 |
| BglII | AGATCT | 2 cut(s) | 2453, 2740 |
| BlpI | GCTNAGC | 3 cut(s) | 1545, 3721, 4641 |
| BmcAI | AGTACT | 2 cut(s) | 4427, 4542 |
| Bme18I | GGWCC | 4 cut(s) | 309, 4527, 4625, 5020 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 5375 |
| BmeT110I | CYCGRG | 1 cut(s) | 590 |
| BmrI | ACTGGG | 2 cut(s) | 315, 2687 |
| BmuI | ACTGGG | 2 cut(s) | 315, 2687 |
| BpiI | GAAGAC | 6 cut(s) | 272, 2283, 2473, 2883, 3855, 5551 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 14, 46, 557, 589 |
| BpmI | CTGGAG | 5 cut(s) | 1208, 2277, 2447, 3405, 4734 |
| Bpu10I | CCTNAGC | 4 cut(s) | 881, 1871, 2391, 5406 |
| Bpu1102I | GCTNAGC | 3 cut(s) | 1545, 3721, 4641 |
| Bpu14I | TTCGAA | 2 cut(s) | 4007, 4788 |
| BpuEI | CTTGAG | 6 cut(s) | 530, 1100, 1883, 3097, 3398, 4067 |
| BpuMI | CCSGG | 2 cut(s) | 836, 2654 |
| BsaAI | YACGTR | 3 cut(s) | 2018, 3766, 4474 |
| BsaBI | GATNNNNATC | 2 cut(s) | 23, 1404 |
| BsaHI | GRCGYC | 4 cut(s) | 740, 2429, 2478, 5418 |
| BsaI | GGTCTC | 1 cut(s) | 5143 |
| BsaWI | WCCGGW | 5 cut(s) | 323, 757, 1071, 3099, 3713 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 1299, 1329, 4688, 4718, 5451, 5481, 5525, 5555 |
| Bse118I | RCCGGY | 1 cut(s) | 4622 |
| Bse21I | CCTNAGG | 4 cut(s) | 462, 540, 1536, 5175 |
| Bse3DI | GCAATG | 2 cut(s) | 860, 3494 |
| Bse8I | GATNNNNATC | 2 cut(s) | 23, 1404 |
| BseAI | TCCGGA | 3 cut(s) | 323, 3099, 3713 |
| BseJI | GATNNNNATC | 2 cut(s) | 23, 1404 |
| BseMI | GCAATG | 2 cut(s) | 860, 3494 |
| BseRI | GAGGAG | 5 cut(s) | 2450, 3094, 3225, 3401, 3942 |
| BseSI | GKGCMC | 4 cut(s) | 539, 1214, 5225, 5540 |
| BseXI | GCAGC | 8 cut(s) | 91, 1492, 3824, 3907, 4274, 4583, 4649, 4846 |
| BseYI | CCCAGC | 2 cut(s) | 2313, 2562 |
| Bsh1236I | CGCG | 1 cut(s) | 2061 |
| BshNI | GGYRCC | 5 cut(s) | 433, 2869, 3180, 3433, 5417 |
| BsiHKAI | GWGCWC | 8 cut(s) | 382, 2422, 2601, 2889, 3063, 4383, 4615, 5225 |
| BsiHKCI | CYCGRG | 1 cut(s) | 590 |
| BsmBI | CGTCTC | 1 cut(s) | 4471 |
| BsmI | GAATGC | 4 cut(s) | 627, 2956, 3137, 5054 |
| Bso31I | GGTCTC | 1 cut(s) | 5143 |
| BsoBI | CYCGRG | 1 cut(s) | 590 |
| Bsp119I | TTCGAA | 2 cut(s) | 4007, 4788 |
| Bsp120I | GGGCCC | 2 cut(s) | 535, 5536 |
| Bsp13I | TCCGGA | 3 cut(s) | 323, 3099, 3713 |
| Bsp1407I | TGTACA | 1 cut(s) | 4518 |
| Bsp1720I | GCTNAGC | 3 cut(s) | 1545, 3721, 4641 |
| Bsp19I | CCATGG | 3 cut(s) | 1206, 4087, 5016 |
| BspEI | TCCGGA | 3 cut(s) | 323, 3099, 3713 |
| BspFNI | CGCG | 1 cut(s) | 2061 |
| BspHI | TCATGA | 2 cut(s) | 13, 1710 |
| BspMI | ACCTGC | 1 cut(s) | 3861 |
| BspQI | GCTCTTC | 1 cut(s) | 2877 |
| BspT104I | TTCGAA | 2 cut(s) | 4007, 4788 |
| BspT107I | GGYRCC | 5 cut(s) | 433, 2869, 3180, 3433, 5417 |
| BspTI | CTTAAG | 1 cut(s) | 352 |
| BspTNI | GGTCTC | 1 cut(s) | 5143 |
| BsrBI | CCGCTC | 2 cut(s) | 1114, 3620 |
| BsrDI | GCAATG | 2 cut(s) | 860, 3494 |
| BsrFI | RCCGGY | 1 cut(s) | 4622 |
| BsrGI | TGTACA | 1 cut(s) | 4518 |
| BssAI | RCCGGY | 1 cut(s) | 4622 |
| BssNAI | GTATAC | 2 cut(s) | 2917, 5242 |
| BssNI | GRCGYC | 4 cut(s) | 740, 2429, 2478, 5418 |
| BssT1I | CCWWGG | 8 cut(s) | 428, 1206, 1310, 2380, 3163, 3606, 4087, 5016 |
| Bst1107I | GTATAC | 2 cut(s) | 2917, 5242 |
| Bst6I | CTCTTC | 8 cut(s) | 368, 405, 924, 987, 1737, 2877, 4560, 4764 |
| BstACI | GRCGYC | 4 cut(s) | 740, 2429, 2478, 5418 |
| BstAFI | CTTAAG | 1 cut(s) | 352 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 3500, 4716, 5060 |
| BstAUI | TGTACA | 1 cut(s) | 4518 |
| BstBAI | YACGTR | 3 cut(s) | 2018, 3766, 4474 |
| BstBI | TTCGAA | 2 cut(s) | 4007, 4788 |
| BstDSI | CCRYGG | 3 cut(s) | 1206, 4087, 5016 |
| BstEII | GGTNACC | 1 cut(s) | 523 |
| BstENI | CCTNNNNNAGG | 3 cut(s) | 2968, 3441, 5174 |
| BstFNI | CGCG | 1 cut(s) | 2061 |
| BstH2I | RGCGCY | 2 cut(s) | 2080, 5421 |
| BstHHI | GCGC | 4 cut(s) | 145, 1815, 2079, 5420 |
| BstPI | GGTNACC | 1 cut(s) | 523 |
| BstSFI | CTRYAG | 4 cut(s) | 2449, 2734, 5076, 5191 |
| BstSLI | GKGCMC | 4 cut(s) | 539, 1214, 5225, 5540 |
| BstUI | CGCG | 1 cut(s) | 2061 |
| BstV1I | GCAGC | 8 cut(s) | 91, 1492, 3824, 3907, 4274, 4583, 4649, 4846 |
| BstV2I | GAAGAC | 6 cut(s) | 272, 2283, 2473, 2883, 3855, 5551 |
| BstX2I | RGATCY | 9 cut(s) | 396, 1074, 2395, 2453, 2515, 2715, 2740, 4223, 5271 |
| BstXI | CCANNNNNNTGG | 4 cut(s) | 1325, 2677, 3363, 4727 |
| BstYI | RGATCY | 9 cut(s) | 396, 1074, 2395, 2453, 2515, 2715, 2740, 4223, 5271 |
| BstZ17I | GTATAC | 2 cut(s) | 2917, 5242 |
| Bsu36I | CCTNAGG | 4 cut(s) | 462, 540, 1536, 5175 |
| BsuI | GTATCC | 1 cut(s) | 1175 |
| BtgI | CCRYGG | 3 cut(s) | 1206, 4087, 5016 |
| BtsI | GCAGTG | 2 cut(s) | 87, 5262 |
| BveI | ACCTGC | 1 cut(s) | 3861 |
| CaiI | CAGNNNCTG | 2 cut(s) | 638, 1841 |
| CciI | TCATGA | 2 cut(s) | 13, 1710 |
| CfoI | GCGC | 4 cut(s) | 145, 1815, 2079, 5420 |
| Cfr10I | RCCGGY | 1 cut(s) | 4622 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1768, 1803 |
| DinI | GGCGCC | 1 cut(s) | 5419 |
| DraI | TTTAAA | 2 cut(s) | 1414, 2946 |
| DraIII | CACNNNGTG | 1 cut(s) | 3823 |
| DriI | GACNNNNNGTC | 1 cut(s) | 5375 |
| EaeI | YGGCCR | 1 cut(s) | 4667 |
| Eam1104I | CTCTTC | 8 cut(s) | 368, 405, 924, 987, 1737, 2877, 4560, 4764 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 5375 |
| EarI | CTCTTC | 8 cut(s) | 368, 405, 924, 987, 1737, 2877, 4560, 4764 |
| EciI | GGCGGA | 1 cut(s) | 575 |
| Ecl136II | GAGCTC | 3 cut(s) | 2599, 2887, 4613 |
| Eco130I | CCWWGG | 8 cut(s) | 428, 1206, 1310, 2380, 3163, 3606, 4087, 5016 |
| Eco147I | AGGCCT | 1 cut(s) | 5485 |
| Eco24I | GRGCYC | 6 cut(s) | 539, 914, 2601, 2889, 4615, 5540 |
| Eco31I | GGTCTC | 1 cut(s) | 5143 |
| Eco32I | GATATC | 1 cut(s) | 3757 |
| Eco47I | GGWCC | 4 cut(s) | 309, 4527, 4625, 5020 |
| Eco47III | AGCGCT | 1 cut(s) | 2078 |
| Eco53kI | GAGCTC | 3 cut(s) | 2599, 2887, 4613 |
| Eco57I | CTGAAG | 6 cut(s) | 1520, 2640, 2895, 2974, 4908, 5271 |
| Eco72I | CACGTG | 1 cut(s) | 2018 |
| Eco81I | CCTNAGG | 4 cut(s) | 462, 540, 1536, 5175 |
| Eco88I | CYCGRG | 1 cut(s) | 590 |
| Eco91I | GGTNACC | 1 cut(s) | 523 |
| EcoICRI | GAGCTC | 3 cut(s) | 2599, 2887, 4613 |
| EcoNI | CCTNNNNNAGG | 3 cut(s) | 2968, 3441, 5174 |
| EcoO109I | RGGNCCY | 5 cut(s) | 309, 535, 536, 4527, 5536 |
| EcoO65I | GGTNACC | 1 cut(s) | 523 |
| EcoRI | GAATTC | 1 cut(s) | 2297 |
| EcoRV | GATATC | 1 cut(s) | 3757 |
| EcoT14I | CCWWGG | 8 cut(s) | 428, 1206, 1310, 2380, 3163, 3606, 4087, 5016 |
| EcoT22I | ATGCAT | 1 cut(s) | 5056 |
| EcoT38I | GRGCYC | 6 cut(s) | 539, 914, 2601, 2889, 4615, 5540 |
| EgeI | GGCGCC | 1 cut(s) | 5419 |
| EheI | GGCGCC | 1 cut(s) | 5419 |
| ErhI | CCWWGG | 8 cut(s) | 428, 1206, 1310, 2380, 3163, 3606, 4087, 5016 |
| Esp3I | CGTCTC | 1 cut(s) | 4471 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 60, 92 |
| FauI | CCCGC | 3 cut(s) | 2066, 4339, 4978 |
| FauNDI | CATATG | 2 cut(s) | 1324, 5575 |
| FbaI | TGATCA | 3 cut(s) | 3, 1744, 4035 |
| FblI | GTMKAC | 3 cut(s) | 2916, 3027, 5241 |
| FriOI | GRGCYC | 6 cut(s) | 539, 914, 2601, 2889, 4615, 5540 |
| FspAI | RTGCGCAY | 1 cut(s) | 144 |
| FspBI | CTAG | 6 cut(s) | 183, 2039, 3602, 3918, 4449, 5267 |
| FspI | TGCGCA | 1 cut(s) | 144 |
| GlaI | GCGC | 4 cut(s) | 144, 1814, 2078, 5419 |
| GsaI | CCCAGC | 2 cut(s) | 2317, 2566 |
| GsuI | CTGGAG | 5 cut(s) | 1208, 2277, 2447, 3405, 4734 |
| HaeII | RGCGCY | 2 cut(s) | 2080, 5421 |
| HhaI | GCGC | 4 cut(s) | 145, 1815, 2079, 5420 |
| Hin1I | GRCGYC | 4 cut(s) | 740, 2429, 2478, 5418 |
| Hin6I | GCGC | 4 cut(s) | 143, 1813, 2077, 5418 |
| HinP1I | GCGC | 4 cut(s) | 143, 1813, 2077, 5418 |
| HincII | GTYRAC | 7 cut(s) | 252, 1170, 2427, 2626, 2731, 3028, 3073 |
| HindII | GTYRAC | 7 cut(s) | 252, 1170, 2427, 2626, 2731, 3028, 3073 |
| HindIII | AAGCTT | 3 cut(s) | 900, 4029, 4930 |
| Hpy99I | CGWCG | 8 cut(s) | 718, 742, 1066, 2586, 2753, 3029, 3032, 4320 |
| Hsp92I | GRCGYC | 4 cut(s) | 740, 2429, 2478, 5418 |
| HspAI | GCGC | 4 cut(s) | 143, 1813, 2077, 5418 |
| KasI | GGCGCC | 1 cut(s) | 5417 |
| Kpn2I | TCCGGA | 3 cut(s) | 323, 3099, 3713 |
| KpnI | GGTACC | 1 cut(s) | 3184 |
| Ksp22I | TGATCA | 3 cut(s) | 3, 1744, 4035 |
| LguI | GCTCTTC | 1 cut(s) | 2877 |
| Lsp1109I | GCAGC | 8 cut(s) | 91, 1492, 3824, 3907, 4274, 4583, 4649, 4846 |
| MaeI | CTAG | 6 cut(s) | 183, 2039, 3602, 3918, 4449, 5267 |
| MbiI | CCGCTC | 2 cut(s) | 1114, 3620 |
| MfeI | CAATTG | 3 cut(s) | 1151, 1698, 4100 |
| MflI | RGATCY | 9 cut(s) | 396, 1074, 2395, 2453, 2515, 2715, 2740, 4223, 5271 |
| Mly113I | GGCGCC | 1 cut(s) | 5418 |
| MlyI | GAGTC | 5 cut(s) | 23, 794, 1575, 2162, 5565 |
| MmeI | TCCRAC | 5 cut(s) | 1304, 1484, 2172, 4288, 5404 |
| Mph1103I | ATGCAT | 1 cut(s) | 5056 |
| MroI | TCCGGA | 3 cut(s) | 323, 3099, 3713 |
| MroXI | GAANNNNTTC | 1 cut(s) | 4893 |
| MslI | CAYNNNNRTG | 6 cut(s) | 1323, 1920, 2195, 2930, 3361, 3889 |
| MspA1I | CMGCKG | 4 cut(s) | 1097, 2390, 4645, 5026 |
| MspCI | CTTAAG | 1 cut(s) | 352 |
| MunI | CAATTG | 3 cut(s) | 1151, 1698, 4100 |
| Mva1269I | GAATGC | 4 cut(s) | 627, 2956, 3137, 5054 |
| MvnI | CGCG | 1 cut(s) | 2061 |
| NarI | GGCGCC | 1 cut(s) | 5418 |
| NciI | CCSGG | 2 cut(s) | 836, 2654 |
| NcoI | CCATGG | 3 cut(s) | 1206, 4087, 5016 |
| NdeI | CATATG | 2 cut(s) | 1324, 5575 |
| NmeAIII | GCCGAG | 1 cut(s) | 5119 |
| NmuCI | GTSAC | 3 cut(s) | 523, 2154, 5548 |
| NsbI | TGCGCA | 1 cut(s) | 144 |
| NsiI | ATGCAT | 1 cut(s) | 5056 |
| NspV | TTCGAA | 2 cut(s) | 4007, 4788 |
| OliI | CACNNNNGTG | 1 cut(s) | 2195 |
| PaeI | GCATGC | 4 cut(s) | 1930, 2757, 4719, 5054 |
| PagI | TCATGA | 2 cut(s) | 13, 1710 |
| PasI | CCCWGGG | 1 cut(s) | 164 |
| PceI | AGGCCT | 1 cut(s) | 5485 |
| PciI | ACATGT | 2 cut(s) | 918, 1915 |
| PciSI | GCTCTTC | 1 cut(s) | 2877 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 5355 |
| PctI | GAATGC | 4 cut(s) | 627, 2956, 3137, 5054 |
| PdmI | GAANNNNTTC | 1 cut(s) | 4893 |
| PfeI | GAWTC | 8 cut(s) | 169, 230, 1102, 2246, 4094, 4352, 4685, 5110 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1490, 2122 |
| PfoI | TCCNGGA | 2 cut(s) | 2463, 2652 |
| PleI | GAGTC | 5 cut(s) | 23, 793, 1574, 2161, 5564 |
| PluTI | GGCGCC | 1 cut(s) | 5421 |
| PmaCI | CACGTG | 1 cut(s) | 2018 |
| PmlI | CACGTG | 1 cut(s) | 2018 |
| PpsI | GAGTC | 5 cut(s) | 23, 793, 1574, 2161, 5564 |
| Ppu21I | YACGTR | 3 cut(s) | 2018, 3766, 4474 |
| PpuMI | RGGWCCY | 2 cut(s) | 309, 4527 |
| PscI | ACATGT | 2 cut(s) | 918, 1915 |
| PsiI | TTATAA | 1 cut(s) | 2853 |
| Psp124BI | GAGCTC | 3 cut(s) | 2601, 2889, 4615 |
| Psp1406I | AACGTT | 2 cut(s) | 699, 4014 |
| Psp5II | RGGWCCY | 2 cut(s) | 309, 4527 |
| PspCI | CACGTG | 1 cut(s) | 2018 |
| PspEI | GGTNACC | 1 cut(s) | 523 |
| PspFI | CCCAGC | 2 cut(s) | 2313, 2562 |
| PspOMI | GGGCCC | 2 cut(s) | 535, 5536 |
| PspPPI | RGGWCCY | 2 cut(s) | 309, 4527 |
| PstNI | CAGNNNCTG | 2 cut(s) | 638, 1841 |
| PsuI | RGATCY | 9 cut(s) | 396, 1074, 2395, 2453, 2515, 2715, 2740, 4223, 5271 |
| PvuII | CAGCTG | 4 cut(s) | 1097, 2390, 4645, 5026 |
| RseI | CAYNNNNRTG | 6 cut(s) | 1323, 1920, 2195, 2930, 3361, 3889 |
| SacI | GAGCTC | 3 cut(s) | 2601, 2889, 4615 |
| SalI | GTCGAC | 1 cut(s) | 3026 |
| SapI | GCTCTTC | 1 cut(s) | 2877 |
| ScaI | AGTACT | 2 cut(s) | 4427, 4542 |
| SchI | GAGTC | 5 cut(s) | 23, 794, 1575, 2162, 5565 |
| SfcI | CTRYAG | 4 cut(s) | 2449, 2734, 5076, 5191 |
| SfoI | GGCGCC | 1 cut(s) | 5419 |
| SfuI | TTCGAA | 2 cut(s) | 4007, 4788 |
| SgrDI | CGTCGACG | 1 cut(s) | 3026 |
| SinI | GGWCC | 4 cut(s) | 309, 4527, 4625, 5020 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 1323, 1920, 2195, 2930, 3361, 3889 |
| SmlI | CTYRAG | 7 cut(s) | 352, 509, 1115, 1898, 3076, 3413, 4046 |
| SmoI | CTYRAG | 7 cut(s) | 352, 509, 1115, 1898, 3076, 3413, 4046 |
| SphI | GCATGC | 4 cut(s) | 1930, 2757, 4719, 5054 |
| SseBI | AGGCCT | 1 cut(s) | 5485 |
| SspDI | GGCGCC | 1 cut(s) | 5417 |
| SspI | AATATT | 1 cut(s) | 1640 |
| SspMI | CTAG | 6 cut(s) | 183, 2039, 3602, 3918, 4449, 5267 |
| SstI | GAGCTC | 3 cut(s) | 2601, 2889, 4615 |
| StuI | AGGCCT | 1 cut(s) | 5485 |
| StyI | CCWWGG | 8 cut(s) | 428, 1206, 1310, 2380, 3163, 3606, 4087, 5016 |
| TatI | WGTACW | 4 cut(s) | 4201, 4425, 4518, 4540 |
| TauI | GCSGC | 3 cut(s) | 3473, 3620, 3917 |
| TfiI | GAWTC | 8 cut(s) | 169, 230, 1102, 2246, 4094, 4352, 4685, 5110 |
| TseFI | GTSAC | 3 cut(s) | 523, 2154, 5548 |
| TseI | GCWGC | 8 cut(s) | 104, 1480, 3812, 3895, 4262, 4571, 4637, 4859 |
| Tsp45I | GTSAC | 3 cut(s) | 523, 2154, 5548 |
| TspGWI | ACGGA | 4 cut(s) | 731, 2724, 4357, 5610 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1490, 2122 |
| Vha464I | CTTAAG | 1 cut(s) | 352 |
| VneI | GTGCAC | 1 cut(s) | 5221 |
| VpaK11BI | GGWCC | 4 cut(s) | 309, 4527, 4625, 5020 |
| XagI | CCTNNNNNAGG | 3 cut(s) | 2968, 3441, 5174 |
| XapI | RAATTY | 9 cut(s) | 177, 238, 452, 1445, 1784, 1941, 2297, 3244, 5438 |
| XcmI | CCANNNNNNNNNTGG | 4 cut(s) | 1232, 1390, 1661, 4304 |
| XmiI | GTMKAC | 3 cut(s) | 2916, 3027, 5241 |
| XmnI | GAANNNNTTC | 1 cut(s) | 4893 |
| XspI | CTAG | 6 cut(s) | 183, 2039, 3602, 3918, 4449, 5267 |
| ZraI | GACGTC | 2 cut(s) | 741, 2479 |
| ZrmI | AGTACT | 2 cut(s) | 4427, 4542 |
| Zsp2I | ATGCAT | 1 cut(s) | 5056 |