pycom16g26240

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0000160
Physical Location & Seq
Forward (+)
28536518 .. 28537036
519 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g26240.1

Sequence Viewer

Length: 519 bp
ATGGGTTACTACTGGCCGAGCATGGTGAAGGACTGCCTGGAACACGCCAAAAAGTGCCAAGCCTGCCAATTCCACGCCAACTTCATACATCAACCGCCTGAACCATTACACCCTACAGTTGCTTCATGGCCGTTCGACGCATGGGGATTGGACGTTGTAGGACCAATTACGCCAAAGTCATCTGCAGGGGAAGCTTACATCCTAGCTGCAACAGATTACTTCTCCAAGTGGGCTGAAGCTATCCCTTTAAGGGAAGTAAAAAAGGAAACTGTTGTTTGTTTCATCAAGGAGCATATCATCCACCGATATGGGGTACCTCGCTACATTATCACTGACAACGGAAAGCAGTTCTCCAACCGACTCGTGGACGAACTTTGCGACAAATACAAGTTCAAGCAGCACAAGTCTTCCATGTATCATGCTCCGGCCAACGGCCTCGCGGAAGCATTCAACAAGACGCTGTGCAACCTCCTGAAAAAGAAGCTGTTTTACCGCTCGAAAGTCAAATTCCCTCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

173

Amino Acids

19.85

Weight (kDa)

9.15

Isoelectric Point (pI)

30.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
rve PF00665 44 - 139 1.6e-12 Integrase core domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000160)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11612 FvH4_2g25851 FvH4_3g22802 FvH4_3g22805 FvH4_3g31361 FvH4_3g31382 FvH4_4g05272 FvH4_4g05273 FvH4_4g14567 FvH4_4g15161 FvH4_5g22540 FvH4_6g13113 FvH4_6g31923 FvH4_6g31924 FvH4_6g33651 FvH4_6g45122 FvH4_7g03662
pyrus_communis pycom01g04240 pycom01g24010 pycom02g18210 pycom02g19420 pycom05g06510 pycom09g15750 pycom09g18940 pycom12g02580 pycom12g03100 pycom12g08310 pycom13g22710 pycom13g28060 pycom16g18340 pycom16g18350 pycom16g24880 pycom16g26240 pycom461g00260 pycom520g00980 pycom520g01320
rosa_chinensis RchiOBHm_Chr1g0320731 RchiOBHm_Chr2g0102771 RchiOBHm_Chr3g0462151 RchiOBHm_Chr5g0038141 RchiOBHm_Chr5g0069371 RchiOBHm_Chr7g0239101
rosa_multiflora Rmu_co8038252.1_g000001 Rmu_co8138412.1_g000001 Rmu_co8331087.1_g000001 Rmu_co8479311.1_g000001 Rmu_sc0000112.1_g000018 Rmu_sc0000346.1_g000012 Rmu_sc0002102.1_g000002 Rmu_sc0003505.1_g000013 Rmu_sc0004249.1_g000007 Rmu_sc0004448.1_g000010 Rmu_sc0004594.1_g000011 Rmu_sc0004915.1_g000010 Rmu_sc0008019.1_g000019 Rmu_sc0008303.1_g000001 Rmu_sc0008355.1_g000005 Rmu_sc0009253.1_g000018 Rmu_sc0010211.1_g000002 Rmu_sc0010252.1_g000009 Rmu_sc0011534.1_g000008 Rmu_sc0014811.1_g000009 Rmu_sc0019475.1_g000001 Rmu_sc0024897.1_g000001 Rmu_sc0024898.1_g000001 Rmu_sc0031791.1_g000001 Rmu_sc0038715.1_g000001
rosa_roxburghii Rroxscaffold_165G00436940 Rroxscaffold_174G00435270 Rroxscaffold_177G00434330 Rroxscaffold_177G00434340 Rroxscaffold_177G00434350 Rroxscaffold_1G00002160 Rroxscaffold_1G00025260 Rroxscaffold_1G00042950 Rroxscaffold_1G00068010 Rroxscaffold_2G00107530 Rroxscaffold_3G00221190 Rroxscaffold_3G00221520 Rroxscaffold_3G00223200 Rroxscaffold_4G00322230 Rroxscaffold_4G00331810 Rroxscaffold_5G00385150 Rroxscaffold_5G00387510 Rroxscaffold_6G00410520 Rroxscaffold_6G00423360 Rroxscaffold_6G00423370 Rroxscaffold_6G00429210 Rroxscaffold_7G00158300 Rroxscaffold_7G00163480 Rroxscaffold_7G00171410 Rroxscaffold_7G00178940 Rroxscaffold_7G00199480 Rroxscaffold_7G00205630 Rroxscaffold_7G00207440
rosa_rugosa Rorug01G0056400 Rorug04G0063900 Rorug05G0251400 Rorug07G0221900
rosa_samantha Rh1DG169400 Rh2AG292900 Rh2DG519200 Rh4DG260600 Rh5AG042600 Rh6BG117500
rosa_wichuraiana Rw0G001900 Rw0G005150 Rw0G006380 Rw0G015140 Rw0G016320 Rw0G019440 Rw0G019840 Rw0G023740 Rw1G001590 Rw1G002180 Rw1G003560 Rw1G004280 Rw1G006110 Rw1G006680 Rw1G007920 Rw1G008480 Rw1G009120 Rw1G010310 Rw1G014900 Rw1G019650 Rw1G022070 Rw1G022170 Rw1G041570 Rw2G002740 Rw2G005760 Rw2G032370 Rw2G046770 Rw2G050600 Rw2G051420 Rw3G015930 Rw3G016280 Rw3G019580 Rw3G028420 Rw4G003430 Rw4G005350 Rw4G007530 Rw4G008150 Rw4G009580 Rw4G010250 Rw4G015800 Rw4G017000 Rw4G017910 Rw4G018510 Rw4G019700 Rw4G031010 Rw5G012650 Rw5G020140 Rw5G022060 Rw5G034420 Rw5G035560 Rw5G043010 Rw5G046750 Rw5G047340 Rw5G049500 Rw6G001390 Rw6G002210 Rw6G004530 Rw6G004770 Rw6G005100 Rw6G005890 Rw6G011860 Rw6G014680 Rw6G019480 Rw6G028970 Rw6G033800 Rw7G013050 Rw7G014800 Rw7G025760 Rw7G025850 Rw7G026730 Rw7G026870 Rw7G036330 Rw7G036430 Rw7G039320 Rw7G039510 Rw7G039560 Rw7G041370 Rw7G042050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 313
AccB1I GGYRCC 1 cut(s) 313
AccBSI CCGCTC 1 cut(s) 495
AccII CGCG 1 cut(s) 440
AciI CCGC 3 cut(s) 95, 440, 493
AcoI YGGCCR 3 cut(s) 14, 128, 426
AcsI RAATTY 1 cut(s) 506
AcuI CTGAAG 1 cut(s) 255
AfaI GTAC 1 cut(s) 315
AfiI CCNNNNNNNGG 4 cut(s) 250, 310, 364, 431
AgsI TTSAA 2 cut(s) 394, 451
AjnI CCWGG 1 cut(s) 36
AluBI AGCT 4 cut(s) 194, 206, 239, 484
AluI AGCT 4 cut(s) 194, 206, 239, 484
AoxI GGCC 4 cut(s) 14, 128, 426, 433
ApeKI GCWGC 2 cut(s) 206, 397
ApoI RAATTY 1 cut(s) 506
Asp718I GGTACC 1 cut(s) 313
AspS9I GGNCC 1 cut(s) 161
AsuHPI GGTGA 1 cut(s) 37
AvaII GGWCC 1 cut(s) 161
BanI GGYRCC 1 cut(s) 313
BarI GAAGNNNNNNTAC 2 cut(s) 473, 505
BauI CACGAG 1 cut(s) 362
BbsI GAAGAC 1 cut(s) 399
BbvI GCAGC 2 cut(s) 193, 409
BceAI ACGGC 2 cut(s) 115, 448
BciT130I CCWGG 1 cut(s) 38
BfaI CTAG 1 cut(s) 203
BfmI CTRYAG 2 cut(s) 114, 183
BisI GCNGC 2 cut(s) 207, 398
BlsI GCNGC 2 cut(s) 208, 399
Bme1390I CCNGG 1 cut(s) 38
Bme18I GGWCC 1 cut(s) 161
BmgT120I GGNCC 1 cut(s) 161
BmiI GGNNCC 1 cut(s) 315
BmrFI CCNGG 1 cut(s) 38
BpiI GAAGAC 1 cut(s) 399
Bsc4I CCNNNNNNNGG 4 cut(s) 250, 310, 364, 431
Bse1I ACTGG 1 cut(s) 17
BseBI CCWGG 1 cut(s) 38
BseGI GGATG 2 cut(s) 198, 297
BseLI CCNNNNNNNGG 4 cut(s) 250, 310, 364, 431
BseNI ACTGG 1 cut(s) 17
BseXI GCAGC 2 cut(s) 193, 409
Bsh1236I CGCG 1 cut(s) 440
BshFI GGCC 4 cut(s) 16, 130, 428, 435
BshNI GGYRCC 1 cut(s) 313
BsiSI CCGG 1 cut(s) 425
BslI CCNNNNNNNGG 4 cut(s) 250, 310, 364, 431
BsmI GAATGC 1 cut(s) 446
BsnI GGCC 4 cut(s) 16, 130, 428, 435
BspACI CCGC 3 cut(s) 95, 440, 493
BspANI GGCC 4 cut(s) 16, 130, 428, 435
BspFNI CGCG 1 cut(s) 440
BspLI GGNNCC 1 cut(s) 315
BspMAI CTGCAG 1 cut(s) 187
BspT107I GGYRCC 1 cut(s) 313
BsrBI CCGCTC 1 cut(s) 495
BsrI ACTGG 1 cut(s) 17
BssSI CACGAG 1 cut(s) 362
Bst2BI CACGAG 1 cut(s) 362
Bst2UI CCWGG 1 cut(s) 38
Bst4CI ACNGT 2 cut(s) 118, 271
BstC8I GCNNGC 1 cut(s) 64
BstF5I GGATG 2 cut(s) 198, 297
BstFNI CGCG 1 cut(s) 440
BstMWI GCNNNNNNNGC 2 cut(s) 63, 191
BstNI CCWGG 1 cut(s) 38
BstSCI CCNGG 1 cut(s) 36
BstSFI CTRYAG 2 cut(s) 114, 183
BstUI CGCG 1 cut(s) 440
BstV1I GCAGC 2 cut(s) 193, 409
BstV2I GAAGAC 1 cut(s) 399
BstXI CCANNNNNNTGG 1 cut(s) 308
BsuRI GGCC 4 cut(s) 16, 130, 428, 435
BtsCI GGATG 2 cut(s) 198, 297
BtsIMutI CAGTG 1 cut(s) 330
Cac8I GCNNGC 1 cut(s) 64
Cfr13I GGNCC 1 cut(s) 161
CseI GACGC 2 cut(s) 146, 466
Csp6I GTAC 1 cut(s) 314
CviAII CATG 5 cut(s) 22, 126, 141, 412, 419
CviQI GTAC 1 cut(s) 314
EaeI YGGCCR 3 cut(s) 14, 128, 426
Eco47I GGWCC 1 cut(s) 161
Eco57I CTGAAG 1 cut(s) 255
EcoRII CCWGG 1 cut(s) 36
FaeI CATG 5 cut(s) 25, 129, 144, 415, 422
FaiI YATR 8 cut(s) 23, 86, 127, 142, 294, 309, 413, 420
FatI CATG 5 cut(s) 21, 125, 140, 411, 418
Fnu4HI GCNGC 2 cut(s) 207, 398
FokI GGATG 2 cut(s) 185, 284
Fsp4HI GCNGC 2 cut(s) 207, 398
FspBI CTAG 1 cut(s) 203
GluI GCNGC 2 cut(s) 207, 398
HaeIII GGCC 4 cut(s) 16, 130, 428, 435
HapII CCGG 1 cut(s) 425
HgaI GACGC 2 cut(s) 146, 466
Hin1II CATG 5 cut(s) 25, 129, 144, 415, 422
HindIII AAGCTT 1 cut(s) 192
HinfI GANTC 1 cut(s) 360
HpaII CCGG 1 cut(s) 425
HphI GGTGA 1 cut(s) 37
Hpy166II GTNNAC 1 cut(s) 367
Hpy188III TCNNGA 1 cut(s) 472
Hpy8I GTNNAC 1 cut(s) 367
Hpy99I CGWCG 1 cut(s) 140
HpyAV CCTTC 1 cut(s) 22
HpyCH4III ACNGT 2 cut(s) 118, 271
HpyCH4IV ACGT 1 cut(s) 153
HpyCH4V TGCA 3 cut(s) 185, 209, 465
HpyF10VI GCNNNNNNNGC 2 cut(s) 63, 191
HpySE526I ACGT 1 cut(s) 153
Hsp92II CATG 5 cut(s) 25, 129, 144, 415, 422
KpnI GGTACC 1 cut(s) 317
LmnI GCTCC 2 cut(s) 289, 427
LpnPI CCDG 7 cut(s) 23, 50, 76, 111, 171, 438, 485
Lsp1109I GCAGC 2 cut(s) 193, 409
MaeI CTAG 1 cut(s) 203
MaeII ACGT 1 cut(s) 153
MaeIII GTNAC 1 cut(s) 5
MbiI CCGCTC 1 cut(s) 495
MboII GAAGA 1 cut(s) 399
MluCI AATT 3 cut(s) 68, 165, 506
MlyI GAGTC 1 cut(s) 354
MmeI TCCRAC 1 cut(s) 378
MnlI CCTC 3 cut(s) 327, 446, 479
MseI TTAA 1 cut(s) 248
MslI CAYNNNNRTG 1 cut(s) 306
MspI CCGG 1 cut(s) 425
MspR9I CCNGG 1 cut(s) 38
Mva1269I GAATGC 1 cut(s) 446
MvaI CCWGG 1 cut(s) 38
MvnI CGCG 1 cut(s) 440
MwoI GCNNNNNNNGC 2 cut(s) 63, 191
NlaIII CATG 5 cut(s) 25, 129, 144, 415, 422
NlaIV GGNNCC 1 cut(s) 315
NmeAIII GCCGAG 1 cut(s) 42
PcsI WCGNNNNNNNCGW 1 cut(s) 375
PctI GAATGC 1 cut(s) 446
PkrI GCNGC 2 cut(s) 208, 399
PleI GAGTC 1 cut(s) 354
PpsI GAGTC 1 cut(s) 354
Psp6I CCWGG 1 cut(s) 36
PspGI CCWGG 1 cut(s) 36
PspN4I GGNNCC 1 cut(s) 315
PspPI GGNCC 1 cut(s) 161
PstI CTGCAG 1 cut(s) 187
RsaI GTAC 1 cut(s) 315
RsaNI GTAC 1 cut(s) 314
RseI CAYNNNNRTG 1 cut(s) 306
SaqAI TTAA 1 cut(s) 248
SatI GCNGC 2 cut(s) 207, 398
Sau96I GGNCC 1 cut(s) 161
SchI GAGTC 1 cut(s) 354
ScrFI CCNGG 1 cut(s) 38
SetI ASST 7 cut(s) 156, 196, 208, 241, 319, 471, 486
SfcI CTRYAG 2 cut(s) 114, 183
SinI GGWCC 1 cut(s) 161
SmiMI CAYNNNNRTG 1 cut(s) 306
Sse9I AATT 3 cut(s) 68, 165, 506
SsiI CCGC 3 cut(s) 95, 440, 493
SspMI CTAG 1 cut(s) 203
StyD4I CCNGG 1 cut(s) 36
TaaI ACNGT 2 cut(s) 118, 271
TaiI ACGT 1 cut(s) 156
TaqI TCGA 2 cut(s) 135, 497
TasI AATT 3 cut(s) 68, 165, 506
Tru1I TTAA 1 cut(s) 248
Tru9I TTAA 1 cut(s) 248
TscAI CASTG 1 cut(s) 337
TseI GCWGC 2 cut(s) 206, 397
TspDTI ATGAA 3 cut(s) 73, 114, 271
TspGWI ACGGA 1 cut(s) 354
TspRI CASTG 1 cut(s) 337
VpaK11BI GGWCC 1 cut(s) 161
XapI RAATTY 1 cut(s) 506
XcmI CCANNNNNNNNNTGG 1 cut(s) 361
XspI CTAG 1 cut(s) 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.