Rmu_sc0000112.1_g000018

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000112.1
OG0000160
Physical Location & Seq
Reverse (-)
87590 .. 87901
312 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000112.1_g000018.1.cds

Sequence Viewer

Length: 312 bp
ctgaatcgcgccatcgagcttctggaccaatttgacgacgtcgatctggaacatataccacgcgagcgtaactttgcagctaatgagctcgctcagctggccacaggcatcacattgaagtatggagtacgcgagcgcattttgaaagttgagcgtcgcacattaccttcatggcttgcacgaccagatctaccagataagcccgtggtcgcggttctagaagctattgatgtagattggcggatcccgctaattgagtacctcaaacaaccagacccagagctgacaggaagactcgtttcctcgcactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

103

Amino Acids

11.86

Weight (kDa)

5.13

Isoelectric Point (pI)

33.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000160)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11612 FvH4_2g25851 FvH4_3g22802 FvH4_3g22805 FvH4_3g31361 FvH4_3g31382 FvH4_4g05272 FvH4_4g05273 FvH4_4g14567 FvH4_4g15161 FvH4_5g22540 FvH4_6g13113 FvH4_6g31923 FvH4_6g31924 FvH4_6g33651 FvH4_6g45122 FvH4_7g03662
pyrus_communis pycom01g04240 pycom01g24010 pycom02g18210 pycom02g19420 pycom05g06510 pycom09g15750 pycom09g18940 pycom12g02580 pycom12g03100 pycom12g08310 pycom13g22710 pycom13g28060 pycom16g18340 pycom16g18350 pycom16g24880 pycom16g26240 pycom461g00260 pycom520g00980 pycom520g01320
rosa_chinensis RchiOBHm_Chr1g0320731 RchiOBHm_Chr2g0102771 RchiOBHm_Chr3g0462151 RchiOBHm_Chr5g0038141 RchiOBHm_Chr5g0069371 RchiOBHm_Chr7g0239101
rosa_multiflora Rmu_co8038252.1_g000001 Rmu_co8138412.1_g000001 Rmu_co8331087.1_g000001 Rmu_co8479311.1_g000001 Rmu_sc0000112.1_g000018 Rmu_sc0000346.1_g000012 Rmu_sc0002102.1_g000002 Rmu_sc0003505.1_g000013 Rmu_sc0004249.1_g000007 Rmu_sc0004448.1_g000010 Rmu_sc0004594.1_g000011 Rmu_sc0004915.1_g000010 Rmu_sc0008019.1_g000019 Rmu_sc0008303.1_g000001 Rmu_sc0008355.1_g000005 Rmu_sc0009253.1_g000018 Rmu_sc0010211.1_g000002 Rmu_sc0010252.1_g000009 Rmu_sc0011534.1_g000008 Rmu_sc0014811.1_g000009 Rmu_sc0019475.1_g000001 Rmu_sc0024897.1_g000001 Rmu_sc0024898.1_g000001 Rmu_sc0031791.1_g000001 Rmu_sc0038715.1_g000001
rosa_roxburghii Rroxscaffold_165G00436940 Rroxscaffold_174G00435270 Rroxscaffold_177G00434330 Rroxscaffold_177G00434340 Rroxscaffold_177G00434350 Rroxscaffold_1G00002160 Rroxscaffold_1G00025260 Rroxscaffold_1G00042950 Rroxscaffold_1G00068010 Rroxscaffold_2G00107530 Rroxscaffold_3G00221190 Rroxscaffold_3G00221520 Rroxscaffold_3G00223200 Rroxscaffold_4G00322230 Rroxscaffold_4G00331810 Rroxscaffold_5G00385150 Rroxscaffold_5G00387510 Rroxscaffold_6G00410520 Rroxscaffold_6G00423360 Rroxscaffold_6G00423370 Rroxscaffold_6G00429210 Rroxscaffold_7G00158300 Rroxscaffold_7G00163480 Rroxscaffold_7G00171410 Rroxscaffold_7G00178940 Rroxscaffold_7G00199480 Rroxscaffold_7G00205630 Rroxscaffold_7G00207440
rosa_rugosa Rorug01G0056400 Rorug04G0063900 Rorug05G0251400 Rorug07G0221900
rosa_samantha Rh1DG169400 Rh2AG292900 Rh2DG519200 Rh4DG260600 Rh5AG042600 Rh6BG117500
rosa_wichuraiana Rw0G001900 Rw0G005150 Rw0G006380 Rw0G015140 Rw0G016320 Rw0G019440 Rw0G019840 Rw0G023740 Rw1G001590 Rw1G002180 Rw1G003560 Rw1G004280 Rw1G006110 Rw1G006680 Rw1G007920 Rw1G008480 Rw1G009120 Rw1G010310 Rw1G014900 Rw1G019650 Rw1G022070 Rw1G022170 Rw1G041570 Rw2G002740 Rw2G005760 Rw2G032370 Rw2G046770 Rw2G050600 Rw2G051420 Rw3G015930 Rw3G016280 Rw3G019580 Rw3G028420 Rw4G003430 Rw4G005350 Rw4G007530 Rw4G008150 Rw4G009580 Rw4G010250 Rw4G015800 Rw4G017000 Rw4G017910 Rw4G018510 Rw4G019700 Rw4G031010 Rw5G012650 Rw5G020140 Rw5G022060 Rw5G034420 Rw5G035560 Rw5G043010 Rw5G046750 Rw5G047340 Rw5G049500 Rw6G001390 Rw6G002210 Rw6G004530 Rw6G004770 Rw6G005100 Rw6G005890 Rw6G011860 Rw6G014680 Rw6G019480 Rw6G028970 Rw6G033800 Rw7G013050 Rw7G014800 Rw7G025760 Rw7G025850 Rw7G026730 Rw7G026870 Rw7G036330 Rw7G036430 Rw7G039320 Rw7G039510 Rw7G039560 Rw7G041370 Rw7G042050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 42
AccII CGCG 4 cut(s) 9, 63, 132, 212
AciI CCGC 3 cut(s) 212, 241, 248
AclWI GGATC 2 cut(s) 238, 251
AcoI YGGCCR 1 cut(s) 99
AcyI GRCGYC 1 cut(s) 39
AfaI GTAC 2 cut(s) 129, 260
AgsI TTSAA 2 cut(s) 118, 145
AluBI AGCT 6 cut(s) 19, 80, 88, 97, 224, 283
AluI AGCT 6 cut(s) 19, 80, 88, 97, 224, 283
Alw21I GWGCWC 1 cut(s) 90
AlwI GGATC 2 cut(s) 238, 251
AoxI GGCC 1 cut(s) 99
ApeKI GCWGC 1 cut(s) 77
AspLEI GCGC 2 cut(s) 11, 138
AspS9I GGNCC 1 cut(s) 25
AvaII GGWCC 1 cut(s) 25
BalI TGGCCA 1 cut(s) 101
BamHI GGATCC 1 cut(s) 243
BanII GRGCYC 1 cut(s) 90
BbsI GAAGAC 1 cut(s) 298
Bbv12I GWGCWC 1 cut(s) 90
BbvI GCAGC 1 cut(s) 89
BccI CCATC 1 cut(s) 20
BfaI CTAG 1 cut(s) 218
BglII AGATCT 1 cut(s) 187
BisI GCNGC 1 cut(s) 78
BlpI GCTNAGC 1 cut(s) 93
BlsI GCNGC 1 cut(s) 79
Bme18I GGWCC 1 cut(s) 25
BmgT120I GGNCC 1 cut(s) 25
BmiI GGNNCC 1 cut(s) 245
BmsI GCATC 1 cut(s) 117
BpiI GAAGAC 1 cut(s) 298
Bpu1102I GCTNAGC 1 cut(s) 93
BsaHI GRCGYC 1 cut(s) 39
BsaJI CCNNGG 1 cut(s) 204
BseDI CCNNGG 1 cut(s) 204
BseMII CTCAG 1 cut(s) 107
BseXI GCAGC 1 cut(s) 89
Bsh1236I CGCG 4 cut(s) 9, 63, 132, 212
BshFI GGCC 1 cut(s) 101
BsiHKAI GWGCWC 1 cut(s) 90
BsnI GGCC 1 cut(s) 101
Bsp1286I GDGCHC 1 cut(s) 90
Bsp143I GATC 3 cut(s) 43, 187, 243
Bsp1720I GCTNAGC 1 cut(s) 93
BspACI CCGC 3 cut(s) 212, 241, 248
BspANI GGCC 1 cut(s) 101
BspCNI CTCAG 1 cut(s) 106
BspFNI CGCG 4 cut(s) 9, 63, 132, 212
BspLI GGNNCC 1 cut(s) 245
BspPI GGATC 2 cut(s) 238, 251
BssECI CCNNGG 1 cut(s) 204
BssMI GATC 3 cut(s) 43, 187, 243
BssNI GRCGYC 1 cut(s) 39
BstACI GRCGYC 1 cut(s) 39
BstC8I GCNNGC 5 cut(s) 65, 90, 99, 134, 177
BstDEI CTNAG 1 cut(s) 93
BstDSI CCRYGG 1 cut(s) 204
BstFNI CGCG 4 cut(s) 9, 63, 132, 212
BstHHI GCGC 2 cut(s) 11, 138
BstKTI GATC 3 cut(s) 46, 190, 246
BstMBI GATC 3 cut(s) 43, 187, 243
BstMWI GCNNNNNNNGC 3 cut(s) 94, 98, 247
BstUI CGCG 4 cut(s) 9, 63, 132, 212
BstV1I GCAGC 1 cut(s) 89
BstV2I GAAGAC 1 cut(s) 298
BstX2I RGATCY 2 cut(s) 187, 243
BstYI RGATCY 2 cut(s) 187, 243
BsuRI GGCC 1 cut(s) 101
BtgI CCRYGG 1 cut(s) 204
Cac8I GCNNGC 5 cut(s) 65, 90, 99, 134, 177
CfoI GCGC 2 cut(s) 11, 138
Cfr13I GGNCC 1 cut(s) 25
CseI GACGC 1 cut(s) 143
Csp6I GTAC 2 cut(s) 128, 259
CviAII CATG 1 cut(s) 171
CviJI RGCY 9 cut(s) 19, 80, 88, 97, 101, 175, 202, 224, 283
CviKI_1 RGCY 9 cut(s) 19, 80, 88, 97, 101, 175, 202, 224, 283
CviQI GTAC 2 cut(s) 128, 259
DdeI CTNAG 1 cut(s) 93
DpnI GATC 3 cut(s) 45, 189, 245
DpnII GATC 3 cut(s) 43, 187, 243
EaeI YGGCCR 1 cut(s) 99
EciI GGCGGA 1 cut(s) 256
Ecl136II GAGCTC 1 cut(s) 88
Eco24I GRGCYC 1 cut(s) 90
Eco47I GGWCC 1 cut(s) 25
Eco53kI GAGCTC 1 cut(s) 88
EcoICRI GAGCTC 1 cut(s) 88
EcoT38I GRGCYC 1 cut(s) 90
FaeI CATG 1 cut(s) 174
FaiI YATR 4 cut(s) 54, 56, 123, 172
FatI CATG 1 cut(s) 170
FauI CCCGC 1 cut(s) 255
Fnu4HI GCNGC 1 cut(s) 78
FriOI GRGCYC 1 cut(s) 90
Fsp4HI GCNGC 1 cut(s) 78
FspBI CTAG 1 cut(s) 218
GlaI GCGC 2 cut(s) 10, 137
GluI GCNGC 1 cut(s) 78
HaeIII GGCC 1 cut(s) 101
HgaI GACGC 1 cut(s) 143
HhaI GCGC 2 cut(s) 11, 138
Hin1I GRCGYC 1 cut(s) 39
Hin1II CATG 1 cut(s) 174
Hin6I GCGC 2 cut(s) 9, 136
HinP1I GCGC 2 cut(s) 9, 136
HinfI GANTC 2 cut(s) 4, 294
Hpy188III TCNNGA 3 cut(s) 23, 47, 218
Hpy99I CGWCG 3 cut(s) 41, 44, 159
HpyAV CCTTC 1 cut(s) 177
HpyCH4IV ACGT 1 cut(s) 39
HpyCH4V TGCA 2 cut(s) 77, 179
HpyF10VI GCNNNNNNNGC 3 cut(s) 94, 98, 247
HpyF3I CTNAG 1 cut(s) 93
HpySE526I ACGT 1 cut(s) 39
Hsp92I GRCGYC 1 cut(s) 39
Hsp92II CATG 1 cut(s) 174
HspAI GCGC 2 cut(s) 9, 136
Kzo9I GATC 3 cut(s) 43, 187, 243
LpnPI CCDG 9 cut(s) 8, 32, 83, 90, 198, 207, 273, 285, 291
Lsp1109I GCAGC 1 cut(s) 89
LweI GCATC 1 cut(s) 117
MaeI CTAG 1 cut(s) 218
MaeII ACGT 1 cut(s) 39
MaeIII GTNAC 1 cut(s) 68
MalI GATC 3 cut(s) 45, 189, 245
MboI GATC 3 cut(s) 43, 187, 243
MboII GAAGA 1 cut(s) 303
MflI RGATCY 2 cut(s) 187, 243
MhlI GDGCHC 1 cut(s) 90
MlsI TGGCCA 1 cut(s) 101
MluCI AATT 2 cut(s) 29, 252
MluNI TGGCCA 1 cut(s) 101
MlyI GAGTC 1 cut(s) 288
MnlI CCTC 1 cut(s) 272
Mox20I TGGCCA 1 cut(s) 101
MscI TGGCCA 1 cut(s) 101
Msp20I TGGCCA 1 cut(s) 101
MspA1I CMGCKG 1 cut(s) 97
MvnI CGCG 4 cut(s) 9, 63, 132, 212
MwoI GCNNNNNNNGC 3 cut(s) 94, 98, 247
NdeII GATC 3 cut(s) 43, 187, 243
NlaIII CATG 1 cut(s) 174
NlaIV GGNNCC 1 cut(s) 245
PfeI GAWTC 1 cut(s) 4
PflFI GACNNNGTC 1 cut(s) 38
PkrI GCNGC 1 cut(s) 79
PleI GAGTC 1 cut(s) 288
PpsI GAGTC 1 cut(s) 288
Psp124BI GAGCTC 1 cut(s) 90
PspN4I GGNNCC 1 cut(s) 245
PspPI GGNCC 1 cut(s) 25
PsuI RGATCY 2 cut(s) 187, 243
PsyI GACNNNGTC 1 cut(s) 38
PvuII CAGCTG 1 cut(s) 97
RsaI GTAC 2 cut(s) 129, 260
RsaNI GTAC 2 cut(s) 128, 259
SacI GAGCTC 1 cut(s) 90
SatI GCNGC 1 cut(s) 78
Sau3AI GATC 3 cut(s) 43, 187, 243
Sau96I GGNCC 1 cut(s) 25
SchI GAGTC 1 cut(s) 288
SduI GDGCHC 1 cut(s) 90
SetI ASST 9 cut(s) 21, 42, 82, 90, 99, 169, 226, 264, 285
SfaNI GCATC 1 cut(s) 117
SinI GGWCC 1 cut(s) 25
Sse9I AATT 2 cut(s) 29, 252
SsiI CCGC 3 cut(s) 212, 241, 248
SspMI CTAG 1 cut(s) 218
SstI GAGCTC 1 cut(s) 90
TaiI ACGT 1 cut(s) 42
TaqI TCGA 2 cut(s) 15, 42
TasI AATT 2 cut(s) 29, 252
TfiI GAWTC 1 cut(s) 4
TseI GCWGC 1 cut(s) 77
TspDTI ATGAA 1 cut(s) 159
Tth111I GACNNNGTC 1 cut(s) 38
VpaK11BI GGWCC 1 cut(s) 25
XbaI TCTAGA 1 cut(s) 217
XcmI CCANNNNNNNNNTGG 1 cut(s) 19
XspI CTAG 1 cut(s) 218
ZraI GACGTC 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.