FvH4_6g31923

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000160
Physical Location & Seq
Forward (+)
25025472 .. 25025945
474 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g31923.t1

Sequence Viewer

Length: 474 bp
ATGCGCCGACATAACCTGAAGATGAACCCCGCCAAGTGTGTTTTTTTCGCGGAGGCCGGCGATTTCCTTGGTTTTCTAGTGCATCAAAGAGGCATCGAAATCCCAAAGGACAAGGCACAGGCGGTAATCACTGCTTCGCCCCCTACCACCAAAAAAGAGCTCCAACAGCTGCTCAGGCGAATCAACTTTCTCCGCCGTTTCATATCAAACGCGGCAGGGAAGGTCCAGCCTTTTTCACCCCTCCTCAAGCGCCAGGGGGCAACCGAGTTCGTCTGGGAACCACAACATCAACAGGCCTTCGATCGAATCAAGGACTACCTTACGAACCCACCAGTCCTGATCCCACCTCGCGACGGTGCCCCGCTTAAACTTTATATCGCCGCTGCCGACTTGTCCATCGGCGGACTCCTGGCCCAAGACGATGTGAACGGGGTAAAACACGCTGTCTATTACCTTAGCAGGGTTTTTAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

158

Amino Acids

17.71

Weight (kDa)

9.94

Isoelectric Point (pI)

50.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RT_RNaseH_2 PF17919 92 - 157 1.9e-13 RNase H-like domain found in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000160)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11612 FvH4_2g25851 FvH4_3g22802 FvH4_3g22805 FvH4_3g31361 FvH4_3g31382 FvH4_4g05272 FvH4_4g05273 FvH4_4g14567 FvH4_4g15161 FvH4_5g22540 FvH4_6g13113 FvH4_6g31923 FvH4_6g31924 FvH4_6g33651 FvH4_6g45122 FvH4_7g03662
pyrus_communis pycom01g04240 pycom01g24010 pycom02g18210 pycom02g19420 pycom05g06510 pycom09g15750 pycom09g18940 pycom12g02580 pycom12g03100 pycom12g08310 pycom13g22710 pycom13g28060 pycom16g18340 pycom16g18350 pycom16g24880 pycom16g26240 pycom461g00260 pycom520g00980 pycom520g01320
rosa_chinensis RchiOBHm_Chr1g0320731 RchiOBHm_Chr2g0102771 RchiOBHm_Chr3g0462151 RchiOBHm_Chr5g0038141 RchiOBHm_Chr5g0069371 RchiOBHm_Chr7g0239101
rosa_multiflora Rmu_co8038252.1_g000001 Rmu_co8138412.1_g000001 Rmu_co8331087.1_g000001 Rmu_co8479311.1_g000001 Rmu_sc0000112.1_g000018 Rmu_sc0000346.1_g000012 Rmu_sc0002102.1_g000002 Rmu_sc0003505.1_g000013 Rmu_sc0004249.1_g000007 Rmu_sc0004448.1_g000010 Rmu_sc0004594.1_g000011 Rmu_sc0004915.1_g000010 Rmu_sc0008019.1_g000019 Rmu_sc0008303.1_g000001 Rmu_sc0008355.1_g000005 Rmu_sc0009253.1_g000018 Rmu_sc0010211.1_g000002 Rmu_sc0010252.1_g000009 Rmu_sc0011534.1_g000008 Rmu_sc0014811.1_g000009 Rmu_sc0019475.1_g000001 Rmu_sc0024897.1_g000001 Rmu_sc0024898.1_g000001 Rmu_sc0031791.1_g000001 Rmu_sc0038715.1_g000001
rosa_roxburghii Rroxscaffold_165G00436940 Rroxscaffold_174G00435270 Rroxscaffold_177G00434330 Rroxscaffold_177G00434340 Rroxscaffold_177G00434350 Rroxscaffold_1G00002160 Rroxscaffold_1G00025260 Rroxscaffold_1G00042950 Rroxscaffold_1G00068010 Rroxscaffold_2G00107530 Rroxscaffold_3G00221190 Rroxscaffold_3G00221520 Rroxscaffold_3G00223200 Rroxscaffold_4G00322230 Rroxscaffold_4G00331810 Rroxscaffold_5G00385150 Rroxscaffold_5G00387510 Rroxscaffold_6G00410520 Rroxscaffold_6G00423360 Rroxscaffold_6G00423370 Rroxscaffold_6G00429210 Rroxscaffold_7G00158300 Rroxscaffold_7G00163480 Rroxscaffold_7G00171410 Rroxscaffold_7G00178940 Rroxscaffold_7G00199480 Rroxscaffold_7G00205630 Rroxscaffold_7G00207440
rosa_rugosa Rorug01G0056400 Rorug04G0063900 Rorug05G0251400 Rorug07G0221900
rosa_samantha Rh1DG169400 Rh2AG292900 Rh2DG519200 Rh4DG260600 Rh5AG042600 Rh6BG117500
rosa_wichuraiana Rw0G001900 Rw0G005150 Rw0G006380 Rw0G015140 Rw0G016320 Rw0G019440 Rw0G019840 Rw0G023740 Rw1G001590 Rw1G002180 Rw1G003560 Rw1G004280 Rw1G006110 Rw1G006680 Rw1G007920 Rw1G008480 Rw1G009120 Rw1G010310 Rw1G014900 Rw1G019650 Rw1G022070 Rw1G022170 Rw1G041570 Rw2G002740 Rw2G005760 Rw2G032370 Rw2G046770 Rw2G050600 Rw2G051420 Rw3G015930 Rw3G016280 Rw3G019580 Rw3G028420 Rw4G003430 Rw4G005350 Rw4G007530 Rw4G008150 Rw4G009580 Rw4G010250 Rw4G015800 Rw4G017000 Rw4G017910 Rw4G018510 Rw4G019700 Rw4G031010 Rw5G012650 Rw5G020140 Rw5G022060 Rw5G034420 Rw5G035560 Rw5G043010 Rw5G046750 Rw5G047340 Rw5G049500 Rw6G001390 Rw6G002210 Rw6G004530 Rw6G004770 Rw6G005100 Rw6G005890 Rw6G011860 Rw6G014680 Rw6G019480 Rw6G028970 Rw6G033800 Rw7G013050 Rw7G014800 Rw7G025760 Rw7G025850 Rw7G026730 Rw7G026870 Rw7G036330 Rw7G036430 Rw7G039320 Rw7G039510 Rw7G039560 Rw7G041370 Rw7G042050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 356
AccII CGCG 3 cut(s) 50, 212, 351
AciI CCGC 8 cut(s) 30, 50, 122, 193, 212, 362, 381, 402
AclWI GGATC 1 cut(s) 334
AcuI CTGAAG 1 cut(s) 38
AfiI CCNNNNNNNGG 2 cut(s) 353, 460
AjnI CCWGG 2 cut(s) 252, 408
AluBI AGCT 2 cut(s) 160, 169
AluI AGCT 2 cut(s) 160, 169
Alw21I GWGCWC 1 cut(s) 162
AlwI GGATC 1 cut(s) 334
AoxI GGCC 3 cut(s) 54, 294, 411
ApeKI GCWGC 2 cut(s) 169, 383
AspLEI GCGC 2 cut(s) 6, 252
AspS9I GGNCC 2 cut(s) 223, 412
AsuHPI GGTGA 1 cut(s) 228
AvaII GGWCC 1 cut(s) 223
BaeGI GKGCMC 1 cut(s) 361
BanI GGYRCC 1 cut(s) 356
BanII GRGCYC 1 cut(s) 162
Bbv12I GWGCWC 1 cut(s) 162
BbvI GCAGC 2 cut(s) 156, 370
BccI CCATC 1 cut(s) 404
BceAI ACGGC 1 cut(s) 180
BciT130I CCWGG 2 cut(s) 254, 410
BfaI CTAG 1 cut(s) 77
BfoI RGCGCY 1 cut(s) 253
BisI GCNGC 4 cut(s) 170, 213, 381, 384
BlsI GCNGC 4 cut(s) 171, 214, 382, 385
Bme1390I CCNGG 2 cut(s) 254, 410
Bme18I GGWCC 1 cut(s) 223
BmgT120I GGNCC 2 cut(s) 223, 412
BmiI GGNNCC 2 cut(s) 279, 358
BmrFI CCNGG 2 cut(s) 254, 410
BmsI GCATC 2 cut(s) 91, 102
Bpu10I CCTNAGC 2 cut(s) 173, 455
BpuEI CTTGAG 1 cut(s) 230
BsaJI CCNNGG 2 cut(s) 67, 253
Bsc4I CCNNNNNNNGG 2 cut(s) 353, 460
Bse118I RCCGGY 1 cut(s) 56
Bse1I ACTGG 1 cut(s) 332
BseBI CCWGG 2 cut(s) 254, 410
BseDI CCNNGG 2 cut(s) 67, 253
BseLI CCNNNNNNNGG 2 cut(s) 353, 460
BseMII CTCAG 1 cut(s) 187
BseNI ACTGG 1 cut(s) 332
BseRI GAGGAG 1 cut(s) 233
BseSI GKGCMC 1 cut(s) 361
BseXI GCAGC 2 cut(s) 156, 370
Bsh1236I CGCG 3 cut(s) 50, 212, 351
Bsh1285I CGRYCG 1 cut(s) 304
BshFI GGCC 3 cut(s) 56, 296, 413
BshNI GGYRCC 1 cut(s) 356
BsiEI CGRYCG 1 cut(s) 304
BsiHKAI GWGCWC 1 cut(s) 162
BsiSI CCGG 1 cut(s) 57
BslI CCNNNNNNNGG 2 cut(s) 353, 460
BsnI GGCC 3 cut(s) 56, 296, 413
Bsp1286I GDGCHC 2 cut(s) 162, 361
Bsp143I GATC 2 cut(s) 301, 339
Bsp68I TCGCGA 1 cut(s) 351
BspACI CCGC 8 cut(s) 30, 50, 122, 193, 212, 362, 381, 402
BspANI GGCC 3 cut(s) 56, 296, 413
BspCNI CTCAG 1 cut(s) 186
BspFNI CGCG 3 cut(s) 50, 212, 351
BspLI GGNNCC 2 cut(s) 279, 358
BspPI GGATC 1 cut(s) 334
BspT107I GGYRCC 1 cut(s) 356
BsrFI RCCGGY 1 cut(s) 56
BsrI ACTGG 1 cut(s) 332
BssAI RCCGGY 1 cut(s) 56
BssECI CCNNGG 2 cut(s) 67, 253
BssMI GATC 2 cut(s) 301, 339
BssT1I CCWWGG 1 cut(s) 67
Bst2UI CCWGG 2 cut(s) 254, 410
Bst4CI ACNGT 1 cut(s) 356
BstC8I GCNNGC 1 cut(s) 58
BstDEI CTNAG 2 cut(s) 173, 455
BstFNI CGCG 3 cut(s) 50, 212, 351
BstH2I RGCGCY 1 cut(s) 253
BstHHI GCGC 2 cut(s) 6, 252
BstKTI GATC 2 cut(s) 304, 342
BstMBI GATC 2 cut(s) 301, 339
BstMCI CGRYCG 1 cut(s) 304
BstMWI GCNNNNNNNGC 2 cut(s) 166, 175
BstNI CCWGG 2 cut(s) 254, 410
BstSCI CCNGG 2 cut(s) 252, 408
BstSLI GKGCMC 1 cut(s) 361
BstUI CGCG 3 cut(s) 50, 212, 351
BstV1I GCAGC 2 cut(s) 156, 370
BsuRI GGCC 3 cut(s) 56, 296, 413
BtsI GCAGTG 1 cut(s) 129
BtsIMutI CAGTG 1 cut(s) 129
BtuMI TCGCGA 1 cut(s) 351
Cac8I GCNNGC 1 cut(s) 58
CfoI GCGC 2 cut(s) 6, 252
Cfr10I RCCGGY 1 cut(s) 56
Cfr13I GGNCC 2 cut(s) 223, 412
CviJI RGCY 6 cut(s) 56, 160, 169, 229, 296, 413
CviKI_1 RGCY 6 cut(s) 56, 160, 169, 229, 296, 413
DdeI CTNAG 2 cut(s) 173, 455
DpnI GATC 2 cut(s) 303, 341
DpnII GATC 2 cut(s) 301, 339
EciI GGCGGA 2 cut(s) 182, 417
Ecl136II GAGCTC 1 cut(s) 160
Eco130I CCWWGG 1 cut(s) 67
Eco147I AGGCCT 1 cut(s) 296
Eco24I GRGCYC 1 cut(s) 162
Eco47I GGWCC 1 cut(s) 223
Eco53kI GAGCTC 1 cut(s) 160
Eco57I CTGAAG 1 cut(s) 38
EcoICRI GAGCTC 1 cut(s) 160
EcoRII CCWGG 2 cut(s) 252, 408
EcoT14I CCWWGG 1 cut(s) 67
EcoT38I GRGCYC 1 cut(s) 162
ErhI CCWWGG 1 cut(s) 67
FaiI YATR 3 cut(s) 12, 203, 375
FauI CCCGC 2 cut(s) 37, 369
Fnu4HI GCNGC 4 cut(s) 170, 213, 381, 384
FriOI GRGCYC 1 cut(s) 162
Fsp4HI GCNGC 4 cut(s) 170, 213, 381, 384
FspBI CTAG 1 cut(s) 77
GlaI GCGC 2 cut(s) 5, 251
GluI GCNGC 4 cut(s) 170, 213, 381, 384
HaeII RGCGCY 1 cut(s) 253
HaeIII GGCC 3 cut(s) 56, 296, 413
HapII CCGG 1 cut(s) 57
HhaI GCGC 2 cut(s) 6, 252
Hin6I GCGC 2 cut(s) 4, 250
HinP1I GCGC 2 cut(s) 4, 250
HinfI GANTC 3 cut(s) 180, 306, 405
HpaII CCGG 1 cut(s) 57
HphI GGTGA 1 cut(s) 228
Hpy166II GTNNAC 1 cut(s) 427
Hpy188III TCNNGA 2 cut(s) 337, 350
Hpy8I GTNNAC 1 cut(s) 427
Hpy99I CGWCG 1 cut(s) 356
HpyAV CCTTC 2 cut(s) 214, 307
HpyCH4III ACNGT 1 cut(s) 356
HpyCH4V TGCA 1 cut(s) 82
HpyF10VI GCNNNNNNNGC 2 cut(s) 166, 175
HpyF3I CTNAG 2 cut(s) 173, 455
HspAI GCGC 2 cut(s) 4, 250
KroI GCCGGC 1 cut(s) 56
KroNI GCCGGC 1 cut(s) 58
Kzo9I GATC 2 cut(s) 301, 339
LmnI GCTCC 1 cut(s) 165
Lsp1109I GCAGC 2 cut(s) 156, 370
LweI GCATC 2 cut(s) 91, 102
MaeI CTAG 1 cut(s) 77
MalI GATC 2 cut(s) 303, 341
MboI GATC 2 cut(s) 301, 339
MboII GAAGA 1 cut(s) 31
MhlI GDGCHC 2 cut(s) 162, 361
MlyI GAGTC 1 cut(s) 399
MmeI TCCRAC 1 cut(s) 187
MnlI CCTC 5 cut(s) 46, 83, 251, 254, 357
MroNI GCCGGC 1 cut(s) 56
MseI TTAA 2 cut(s) 366, 468
MspA1I CMGCKG 2 cut(s) 169, 383
MspI CCGG 1 cut(s) 57
MspR9I CCNGG 2 cut(s) 254, 410
MvaI CCWGG 2 cut(s) 254, 410
MvnI CGCG 3 cut(s) 50, 212, 351
MwoI GCNNNNNNNGC 2 cut(s) 166, 175
NaeI GCCGGC 1 cut(s) 58
NdeII GATC 2 cut(s) 301, 339
NgoMIV GCCGGC 1 cut(s) 56
NlaIV GGNNCC 2 cut(s) 279, 358
NruI TCGCGA 1 cut(s) 351
PceI AGGCCT 1 cut(s) 296
PcsI WCGNNNNNNNCGW 1 cut(s) 384
PdiI GCCGGC 1 cut(s) 58
PfeI GAWTC 2 cut(s) 180, 306
PkrI GCNGC 4 cut(s) 171, 214, 382, 385
Ple19I CGATCG 1 cut(s) 304
PleI GAGTC 1 cut(s) 399
PpsI GAGTC 1 cut(s) 399
Psp124BI GAGCTC 1 cut(s) 162
Psp6I CCWGG 2 cut(s) 252, 408
PspGI CCWGG 2 cut(s) 252, 408
PspN4I GGNNCC 2 cut(s) 279, 358
PspPI GGNCC 2 cut(s) 223, 412
PvuI CGATCG 1 cut(s) 304
PvuII CAGCTG 1 cut(s) 169
RruI TCGCGA 1 cut(s) 351
SacI GAGCTC 1 cut(s) 162
SaqAI TTAA 2 cut(s) 366, 468
SatI GCNGC 4 cut(s) 170, 213, 381, 384
Sau3AI GATC 2 cut(s) 301, 339
Sau96I GGNCC 2 cut(s) 223, 412
SchI GAGTC 1 cut(s) 399
ScrFI CCNGG 2 cut(s) 254, 410
SduI GDGCHC 2 cut(s) 162, 361
SetI ASST 7 cut(s) 18, 162, 171, 225, 321, 349, 456
SfaNI GCATC 2 cut(s) 91, 102
SinI GGWCC 1 cut(s) 223
SmlI CTYRAG 1 cut(s) 245
SmoI CTYRAG 1 cut(s) 245
SseBI AGGCCT 1 cut(s) 296
SsiI CCGC 8 cut(s) 30, 50, 122, 193, 212, 362, 381, 402
SspMI CTAG 1 cut(s) 77
SstI GAGCTC 1 cut(s) 162
StuI AGGCCT 1 cut(s) 296
StyD4I CCNGG 2 cut(s) 252, 408
StyI CCWWGG 1 cut(s) 67
TaaI ACNGT 1 cut(s) 356
TaqI TCGA 3 cut(s) 96, 300, 304
TauI GCSGC 2 cut(s) 215, 383
TfiI GAWTC 2 cut(s) 180, 306
Tru1I TTAA 2 cut(s) 366, 468
Tru9I TTAA 2 cut(s) 366, 468
TscAI CASTG 1 cut(s) 136
TseI GCWGC 2 cut(s) 169, 383
TspDTI ATGAA 2 cut(s) 38, 190
TspRI CASTG 1 cut(s) 136
VpaK11BI GGWCC 1 cut(s) 223
XspI CTAG 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.