Rroxscaffold_1G00025260

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000160
Physical Location & Seq
Forward (+)
31761581 .. 31764595
3015 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00025260.1

Sequence Viewer

Length: 402 bp
ATGTTTGGTCACGACGCGGTTTTACCTTTGGAGATCAATGTTCACTCCCTATGCGTCCAAGATCAACATCATTTGATTGGTGATGACTACGTCCGGGCCATATGGCAGGAGCACGAAGACCTTAGCGGACAGCGCTTAGAGGCTTTGGACAACTTAGTGATGGAGAAGCAACGTATTGCTCATGCCTACGATAAGAGAACTCGCAGCCGCAGTTACAAAGATGGCGAGCTCGTTTGGAAGGCAGTCCTTCCATTTGGTGAGAAGTTGACCGGTCGTGGTAAATGGACCACGCGGCGGGAAGGGTCCTTTGTGATTCATGGAATTATGGAACGTGGGACTTTTCACCTCAAAGATTTGGATGGCGACCTCCACCTCAACCCTATCAATGGCGAGGGTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

133

Amino Acids

15.27

Weight (kDa)

6.11

Isoelectric Point (pI)

27.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000160)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11612 FvH4_2g25851 FvH4_3g22802 FvH4_3g22805 FvH4_3g31361 FvH4_3g31382 FvH4_4g05272 FvH4_4g05273 FvH4_4g14567 FvH4_4g15161 FvH4_5g22540 FvH4_6g13113 FvH4_6g31923 FvH4_6g31924 FvH4_6g33651 FvH4_6g45122 FvH4_7g03662
pyrus_communis pycom01g04240 pycom01g24010 pycom02g18210 pycom02g19420 pycom05g06510 pycom09g15750 pycom09g18940 pycom12g02580 pycom12g03100 pycom12g08310 pycom13g22710 pycom13g28060 pycom16g18340 pycom16g18350 pycom16g24880 pycom16g26240 pycom461g00260 pycom520g00980 pycom520g01320
rosa_chinensis RchiOBHm_Chr1g0320731 RchiOBHm_Chr2g0102771 RchiOBHm_Chr3g0462151 RchiOBHm_Chr5g0038141 RchiOBHm_Chr5g0069371 RchiOBHm_Chr7g0239101
rosa_multiflora Rmu_co8038252.1_g000001 Rmu_co8138412.1_g000001 Rmu_co8331087.1_g000001 Rmu_co8479311.1_g000001 Rmu_sc0000112.1_g000018 Rmu_sc0000346.1_g000012 Rmu_sc0002102.1_g000002 Rmu_sc0003505.1_g000013 Rmu_sc0004249.1_g000007 Rmu_sc0004448.1_g000010 Rmu_sc0004594.1_g000011 Rmu_sc0004915.1_g000010 Rmu_sc0008019.1_g000019 Rmu_sc0008303.1_g000001 Rmu_sc0008355.1_g000005 Rmu_sc0009253.1_g000018 Rmu_sc0010211.1_g000002 Rmu_sc0010252.1_g000009 Rmu_sc0011534.1_g000008 Rmu_sc0014811.1_g000009 Rmu_sc0019475.1_g000001 Rmu_sc0024897.1_g000001 Rmu_sc0024898.1_g000001 Rmu_sc0031791.1_g000001 Rmu_sc0038715.1_g000001
rosa_roxburghii Rroxscaffold_165G00436940 Rroxscaffold_174G00435270 Rroxscaffold_177G00434330 Rroxscaffold_177G00434340 Rroxscaffold_177G00434350 Rroxscaffold_1G00002160 Rroxscaffold_1G00025260 Rroxscaffold_1G00042950 Rroxscaffold_1G00068010 Rroxscaffold_2G00107530 Rroxscaffold_3G00221190 Rroxscaffold_3G00221520 Rroxscaffold_3G00223200 Rroxscaffold_4G00322230 Rroxscaffold_4G00331810 Rroxscaffold_5G00385150 Rroxscaffold_5G00387510 Rroxscaffold_6G00410520 Rroxscaffold_6G00423360 Rroxscaffold_6G00423370 Rroxscaffold_6G00429210 Rroxscaffold_7G00158300 Rroxscaffold_7G00163480 Rroxscaffold_7G00171410 Rroxscaffold_7G00178940 Rroxscaffold_7G00199480 Rroxscaffold_7G00205630 Rroxscaffold_7G00207440
rosa_rugosa Rorug01G0056400 Rorug04G0063900 Rorug05G0251400 Rorug07G0221900
rosa_samantha Rh1DG169400 Rh2AG292900 Rh2DG519200 Rh4DG260600 Rh5AG042600 Rh6BG117500
rosa_wichuraiana Rw0G001900 Rw0G005150 Rw0G006380 Rw0G015140 Rw0G016320 Rw0G019440 Rw0G019840 Rw0G023740 Rw1G001590 Rw1G002180 Rw1G003560 Rw1G004280 Rw1G006110 Rw1G006680 Rw1G007920 Rw1G008480 Rw1G009120 Rw1G010310 Rw1G014900 Rw1G019650 Rw1G022070 Rw1G022170 Rw1G041570 Rw2G002740 Rw2G005760 Rw2G032370 Rw2G046770 Rw2G050600 Rw2G051420 Rw3G015930 Rw3G016280 Rw3G019580 Rw3G028420 Rw4G003430 Rw4G005350 Rw4G007530 Rw4G008150 Rw4G009580 Rw4G010250 Rw4G015800 Rw4G017000 Rw4G017910 Rw4G018510 Rw4G019700 Rw4G031010 Rw5G012650 Rw5G020140 Rw5G022060 Rw5G034420 Rw5G035560 Rw5G043010 Rw5G046750 Rw5G047340 Rw5G049500 Rw6G001390 Rw6G002210 Rw6G004530 Rw6G004770 Rw6G005100 Rw6G005890 Rw6G011860 Rw6G014680 Rw6G019480 Rw6G028970 Rw6G033800 Rw7G013050 Rw7G014800 Rw7G025760 Rw7G025850 Rw7G026730 Rw7G026870 Rw7G036330 Rw7G036430 Rw7G039320 Rw7G039510 Rw7G039560 Rw7G041370 Rw7G042050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 17, 292
AciI CCGC 5 cut(s) 17, 126, 208, 292, 295
AfeI AGCGCT 1 cut(s) 134
AfiI CCNNNNNNNGG 2 cut(s) 294, 386
AgeI ACCGGT 1 cut(s) 269
AluBI AGCT 1 cut(s) 229
AluI AGCT 1 cut(s) 229
Alw21I GWGCWC 2 cut(s) 114, 231
Aor51HI AGCGCT 1 cut(s) 134
AoxI GGCC 1 cut(s) 96
ApeKI GCWGC 1 cut(s) 204
AsiGI ACCGGT 1 cut(s) 269
AspLEI GCGC 1 cut(s) 135
AspS9I GGNCC 3 cut(s) 96, 285, 303
AsuC2I CCSGG 1 cut(s) 95
AsuHPI GGTGA 3 cut(s) 92, 269, 335
AvaII GGWCC 2 cut(s) 285, 303
BanII GRGCYC 1 cut(s) 231
BbsI GAAGAC 1 cut(s) 123
Bbv12I GWGCWC 2 cut(s) 114, 231
BbvI GCAGC 1 cut(s) 216
BccI CCATC 3 cut(s) 154, 215, 353
BcnI CCSGG 1 cut(s) 95
BfoI RGCGCY 1 cut(s) 136
BisI GCNGC 3 cut(s) 205, 208, 293
BlsI GCNGC 3 cut(s) 206, 209, 294
Bme1390I CCNGG 1 cut(s) 95
Bme18I GGWCC 2 cut(s) 285, 303
BmgT120I GGNCC 3 cut(s) 96, 285, 303
BmiI GGNNCC 1 cut(s) 304
BmrFI CCNGG 1 cut(s) 95
BpiI GAAGAC 1 cut(s) 123
Bpu10I CCTNAGC 1 cut(s) 122
BpuMI CCSGG 1 cut(s) 95
BsaBI GATNNNNATC 1 cut(s) 66
BsaWI WCCGGW 1 cut(s) 269
Bsc4I CCNNNNNNNGG 2 cut(s) 294, 386
Bse118I RCCGGY 1 cut(s) 269
Bse8I GATNNNNATC 1 cut(s) 66
BseGI GGATG 1 cut(s) 364
BseJI GATNNNNATC 1 cut(s) 66
BseLI CCNNNNNNNGG 2 cut(s) 294, 386
BseXI GCAGC 1 cut(s) 216
Bsh1236I CGCG 2 cut(s) 17, 292
Bsh1285I CGRYCG 1 cut(s) 274
BshFI GGCC 1 cut(s) 98
BshTI ACCGGT 1 cut(s) 269
BsiEI CGRYCG 1 cut(s) 274
BsiHKAI GWGCWC 2 cut(s) 114, 231
BsiSI CCGG 2 cut(s) 94, 270
BslFI GGGAC 1 cut(s) 349
BslI CCNNNNNNNGG 2 cut(s) 294, 386
BsmFI GGGAC 1 cut(s) 349
BsnI GGCC 1 cut(s) 98
Bsp1286I GDGCHC 2 cut(s) 114, 231
Bsp143I GATC 2 cut(s) 33, 61
BspACI CCGC 5 cut(s) 17, 126, 208, 292, 295
BspANI GGCC 1 cut(s) 98
BspFNI CGCG 2 cut(s) 17, 292
BspLI GGNNCC 1 cut(s) 304
BsrFI RCCGGY 1 cut(s) 269
BssAI RCCGGY 1 cut(s) 269
BssMI GATC 2 cut(s) 33, 61
BstC8I GCNNGC 1 cut(s) 227
BstDEI CTNAG 3 cut(s) 122, 136, 154
BstF5I GGATG 1 cut(s) 364
BstFNI CGCG 2 cut(s) 17, 292
BstH2I RGCGCY 1 cut(s) 136
BstHHI GCGC 1 cut(s) 135
BstKTI GATC 2 cut(s) 36, 64
BstMBI GATC 2 cut(s) 33, 61
BstMCI CGRYCG 1 cut(s) 274
BstMWI GCNNNNNNNGC 1 cut(s) 132
BstSCI CCNGG 1 cut(s) 93
BstUI CGCG 2 cut(s) 17, 292
BstV1I GCAGC 1 cut(s) 216
BstV2I GAAGAC 1 cut(s) 123
BsuRI GGCC 1 cut(s) 98
BtsCI GGATG 1 cut(s) 364
Cac8I GCNNGC 1 cut(s) 227
CfoI GCGC 1 cut(s) 135
Cfr10I RCCGGY 1 cut(s) 269
Cfr13I GGNCC 3 cut(s) 96, 285, 303
CseI GACGC 2 cut(s) 23, 43
CspAI ACCGGT 1 cut(s) 269
CviAII CATG 2 cut(s) 182, 317
CviJI RGCY 4 cut(s) 98, 143, 207, 229
CviKI_1 RGCY 4 cut(s) 98, 143, 207, 229
DdeI CTNAG 3 cut(s) 122, 136, 154
DpnI GATC 2 cut(s) 35, 63
DpnII GATC 2 cut(s) 33, 61
Ecl136II GAGCTC 1 cut(s) 229
Eco24I GRGCYC 1 cut(s) 231
Eco47I GGWCC 2 cut(s) 285, 303
Eco47III AGCGCT 1 cut(s) 134
Eco53kI GAGCTC 1 cut(s) 229
EcoICRI GAGCTC 1 cut(s) 229
EcoO109I RGGNCCY 1 cut(s) 303
EcoT38I GRGCYC 1 cut(s) 231
FaeI CATG 2 cut(s) 185, 320
FaiI YATR 6 cut(s) 52, 101, 103, 183, 318, 326
FaqI GGGAC 1 cut(s) 349
FatI CATG 2 cut(s) 181, 316
FauI CCCGC 1 cut(s) 288
FauNDI CATATG 1 cut(s) 101
Fnu4HI GCNGC 3 cut(s) 205, 208, 293
FokI GGATG 1 cut(s) 371
FriOI GRGCYC 1 cut(s) 231
Fsp4HI GCNGC 3 cut(s) 205, 208, 293
GlaI GCGC 1 cut(s) 134
GluI GCNGC 3 cut(s) 205, 208, 293
HaeII RGCGCY 1 cut(s) 136
HaeIII GGCC 1 cut(s) 98
HapII CCGG 2 cut(s) 94, 270
HgaI GACGC 2 cut(s) 23, 43
HhaI GCGC 1 cut(s) 135
Hin1II CATG 2 cut(s) 185, 320
Hin6I GCGC 1 cut(s) 133
HinP1I GCGC 1 cut(s) 133
HincII GTYRAC 1 cut(s) 267
HindII GTYRAC 1 cut(s) 267
HinfI GANTC 1 cut(s) 313
HpaII CCGG 2 cut(s) 94, 270
HphI GGTGA 3 cut(s) 92, 269, 335
Hpy166II GTNNAC 2 cut(s) 43, 267
Hpy188III TCNNGA 1 cut(s) 11
Hpy8I GTNNAC 2 cut(s) 43, 267
Hpy99I CGWCG 1 cut(s) 17
HpyAV CCTTC 3 cut(s) 232, 257, 293
HpyCH4IV ACGT 3 cut(s) 90, 172, 331
HpyF10VI GCNNNNNNNGC 1 cut(s) 132
HpyF3I CTNAG 3 cut(s) 122, 136, 154
HpySE526I ACGT 3 cut(s) 90, 172, 331
Hsp92II CATG 2 cut(s) 185, 320
HspAI GCGC 1 cut(s) 133
Kzo9I GATC 2 cut(s) 33, 61
LmnI GCTCC 1 cut(s) 109
LpnPI CCDG 3 cut(s) 92, 107, 283
Lsp1109I GCAGC 1 cut(s) 216
MaeII ACGT 3 cut(s) 90, 172, 331
MaeIII GTNAC 2 cut(s) 8, 212
MalI GATC 2 cut(s) 35, 63
MboI GATC 2 cut(s) 33, 61
MboII GAAGA 1 cut(s) 128
MhlI GDGCHC 2 cut(s) 114, 231
MluCI AATT 1 cut(s) 321
MnlI CCTC 5 cut(s) 133, 356, 377, 383, 385
MseI TTAA 1 cut(s) 400
MspI CCGG 2 cut(s) 94, 270
MspR9I CCNGG 1 cut(s) 95
MvnI CGCG 2 cut(s) 17, 292
MwoI GCNNNNNNNGC 1 cut(s) 132
NciI CCSGG 1 cut(s) 95
NdeI CATATG 1 cut(s) 101
NdeII GATC 2 cut(s) 33, 61
NlaIII CATG 2 cut(s) 185, 320
NlaIV GGNNCC 1 cut(s) 304
NmuCI GTSAC 1 cut(s) 8
PfeI GAWTC 1 cut(s) 313
PflFI GACNNNGTC 1 cut(s) 89
PinAI ACCGGT 1 cut(s) 269
PkrI GCNGC 3 cut(s) 206, 209, 294
PpuMI RGGWCCY 1 cut(s) 303
Psp124BI GAGCTC 1 cut(s) 231
Psp5II RGGWCCY 1 cut(s) 303
PspN4I GGNNCC 1 cut(s) 304
PspPI GGNCC 3 cut(s) 96, 285, 303
PspPPI RGGWCCY 1 cut(s) 303
PsyI GACNNNGTC 1 cut(s) 89
SacI GAGCTC 1 cut(s) 231
SaqAI TTAA 1 cut(s) 400
SatI GCNGC 3 cut(s) 205, 208, 293
Sau3AI GATC 2 cut(s) 33, 61
Sau96I GGNCC 3 cut(s) 96, 285, 303
ScrFI CCNGG 1 cut(s) 95
SduI GDGCHC 2 cut(s) 114, 231
SetI ASST 9 cut(s) 28, 93, 123, 175, 231, 334, 348, 369, 375
SinI GGWCC 2 cut(s) 285, 303
Sse9I AATT 1 cut(s) 321
SsiI CCGC 5 cut(s) 17, 126, 208, 292, 295
SstI GAGCTC 1 cut(s) 231
StyD4I CCNGG 1 cut(s) 93
TaiI ACGT 3 cut(s) 93, 175, 334
TasI AATT 1 cut(s) 321
TauI GCSGC 2 cut(s) 210, 295
TfiI GAWTC 1 cut(s) 313
Tru1I TTAA 1 cut(s) 400
Tru9I TTAA 1 cut(s) 400
TseFI GTSAC 1 cut(s) 8
TseI GCWGC 1 cut(s) 204
Tsp45I GTSAC 1 cut(s) 8
TspDTI ATGAA 1 cut(s) 305
Tth111I GACNNNGTC 1 cut(s) 89
VpaK11BI GGWCC 2 cut(s) 285, 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.