Rw6G028970

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000160
Physical Location & Seq
Reverse (-)
53015892 .. 53017017
1126 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G028970.1

Sequence Viewer

Length: 630 bp
ATGGGTGGTGAAGTTGATAAACTGGCAAAAGAATGGGGAATACAGTTCATCCATTCTAGTCCTTATTATGCTCAGTCTAATGGTCAAGCGGAGGCCAGCAACAAAATCATCATCACTTTGCTGAAGAAAATGTTGGAAGCTAATCCGCGACAATGGCATGAGACCCTTTATGAGACTCTTTGGGCCTACCGCACATCGAAGCGAAATCCCACCTCGACTACACCTTATGCTTTGATGTTTGGCCATGACGCAGTCCTACCTTTGGAAGTCAACGCCCAATCATTACGAGTCCAAGAGCAACATCATCTCATTGGAGAAGACTACGTTCAAGCTATGTGGCAGGAACATGAAGACCTTAGCGAAAAGTGCTTGGAAGCTTTAGATAGTTTGGTCATGGAAAAGCAACGAGTTGCTCGAGCCTATGACAAGCGAACAAGGGGAAGGAATTACAGCGAAGGAGAGTTGGTTTGGAAAGCAGTTCTCCCGCTTGGAGAAAAATTAGATGGTCGCGGCAAATGGACTCCAAGATGGGAAGATATCCTCACCGTGCATGGGAAACAGTGGAAGGGTTTTAATCTCCTGGTGATCTTCTCCTCGTTGTTCCATGATGGATCCACCAACAAGCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

209

Amino Acids

24.14

Weight (kDa)

6.72

Isoelectric Point (pI)

37.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000160)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11612 FvH4_2g25851 FvH4_3g22802 FvH4_3g22805 FvH4_3g31361 FvH4_3g31382 FvH4_4g05272 FvH4_4g05273 FvH4_4g14567 FvH4_4g15161 FvH4_5g22540 FvH4_6g13113 FvH4_6g31923 FvH4_6g31924 FvH4_6g33651 FvH4_6g45122 FvH4_7g03662
pyrus_communis pycom01g04240 pycom01g24010 pycom02g18210 pycom02g19420 pycom05g06510 pycom09g15750 pycom09g18940 pycom12g02580 pycom12g03100 pycom12g08310 pycom13g22710 pycom13g28060 pycom16g18340 pycom16g18350 pycom16g24880 pycom16g26240 pycom461g00260 pycom520g00980 pycom520g01320
rosa_chinensis RchiOBHm_Chr1g0320731 RchiOBHm_Chr2g0102771 RchiOBHm_Chr3g0462151 RchiOBHm_Chr5g0038141 RchiOBHm_Chr5g0069371 RchiOBHm_Chr7g0239101
rosa_multiflora Rmu_co8038252.1_g000001 Rmu_co8138412.1_g000001 Rmu_co8331087.1_g000001 Rmu_co8479311.1_g000001 Rmu_sc0000112.1_g000018 Rmu_sc0000346.1_g000012 Rmu_sc0002102.1_g000002 Rmu_sc0003505.1_g000013 Rmu_sc0004249.1_g000007 Rmu_sc0004448.1_g000010 Rmu_sc0004594.1_g000011 Rmu_sc0004915.1_g000010 Rmu_sc0008019.1_g000019 Rmu_sc0008303.1_g000001 Rmu_sc0008355.1_g000005 Rmu_sc0009253.1_g000018 Rmu_sc0010211.1_g000002 Rmu_sc0010252.1_g000009 Rmu_sc0011534.1_g000008 Rmu_sc0014811.1_g000009 Rmu_sc0019475.1_g000001 Rmu_sc0024897.1_g000001 Rmu_sc0024898.1_g000001 Rmu_sc0031791.1_g000001 Rmu_sc0038715.1_g000001
rosa_roxburghii Rroxscaffold_165G00436940 Rroxscaffold_174G00435270 Rroxscaffold_177G00434330 Rroxscaffold_177G00434340 Rroxscaffold_177G00434350 Rroxscaffold_1G00002160 Rroxscaffold_1G00025260 Rroxscaffold_1G00042950 Rroxscaffold_1G00068010 Rroxscaffold_2G00107530 Rroxscaffold_3G00221190 Rroxscaffold_3G00221520 Rroxscaffold_3G00223200 Rroxscaffold_4G00322230 Rroxscaffold_4G00331810 Rroxscaffold_5G00385150 Rroxscaffold_5G00387510 Rroxscaffold_6G00410520 Rroxscaffold_6G00423360 Rroxscaffold_6G00423370 Rroxscaffold_6G00429210 Rroxscaffold_7G00158300 Rroxscaffold_7G00163480 Rroxscaffold_7G00171410 Rroxscaffold_7G00178940 Rroxscaffold_7G00199480 Rroxscaffold_7G00205630 Rroxscaffold_7G00207440
rosa_rugosa Rorug01G0056400 Rorug04G0063900 Rorug05G0251400 Rorug07G0221900
rosa_samantha Rh1DG169400 Rh2AG292900 Rh2DG519200 Rh4DG260600 Rh5AG042600 Rh6BG117500
rosa_wichuraiana Rw0G001900 Rw0G005150 Rw0G006380 Rw0G015140 Rw0G016320 Rw0G019440 Rw0G019840 Rw0G023740 Rw1G001590 Rw1G002180 Rw1G003560 Rw1G004280 Rw1G006110 Rw1G006680 Rw1G007920 Rw1G008480 Rw1G009120 Rw1G010310 Rw1G014900 Rw1G019650 Rw1G022070 Rw1G022170 Rw1G041570 Rw2G002740 Rw2G005760 Rw2G032370 Rw2G046770 Rw2G050600 Rw2G051420 Rw3G015930 Rw3G016280 Rw3G019580 Rw3G028420 Rw4G003430 Rw4G005350 Rw4G007530 Rw4G008150 Rw4G009580 Rw4G010250 Rw4G015800 Rw4G017000 Rw4G017910 Rw4G018510 Rw4G019700 Rw4G031010 Rw5G012650 Rw5G020140 Rw5G022060 Rw5G034420 Rw5G035560 Rw5G043010 Rw5G046750 Rw5G047340 Rw5G049500 Rw6G001390 Rw6G002210 Rw6G004530 Rw6G004770 Rw6G005100 Rw6G005890 Rw6G011860 Rw6G014680 Rw6G019480 Rw6G028970 Rw6G033800 Rw7G013050 Rw7G014800 Rw7G025760 Rw7G025850 Rw7G026730 Rw7G026870 Rw7G036330 Rw7G036430 Rw7G039320 Rw7G039510 Rw7G039560 Rw7G041370 Rw7G042050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 148, 510
AciI CCGC 5 cut(s) 89, 146, 190, 485, 510
AclWI GGATC 2 cut(s) 606, 619
AcoI YGGCCR 1 cut(s) 241
AcuI CTGAAG 1 cut(s) 143
AfiI CCNNNNNNNGG 2 cut(s) 262, 552
AgsI TTSAA 1 cut(s) 329
AjnI CCWGG 1 cut(s) 579
AjuI GAANNNNNNNTTGG 2 cut(s) 116, 148
AluBI AGCT 3 cut(s) 140, 332, 377
AluI AGCT 3 cut(s) 140, 332, 377
Alw26I GTCTC 2 cut(s) 155, 167
AlwI GGATC 2 cut(s) 606, 619
Ama87I CYCGRG 1 cut(s) 414
AoxI GGCC 3 cut(s) 93, 183, 241
AspS9I GGNCC 1 cut(s) 183
AsuHPI GGTGA 3 cut(s) 20, 535, 595
AvaI CYCGRG 1 cut(s) 414
BalI TGGCCA 1 cut(s) 243
BamHI GGATCC 1 cut(s) 611
BbsI GAAGAC 2 cut(s) 324, 357
BccI CCATC 3 cut(s) 497, 522, 602
BciT130I CCWGG 1 cut(s) 581
BcoDI GTCTC 2 cut(s) 155, 167
BfaI CTAG 1 cut(s) 57
BisI GCNGC 1 cut(s) 511
BlsI GCNGC 1 cut(s) 512
Bme1390I CCNGG 1 cut(s) 581
BmeT110I CYCGRG 1 cut(s) 414
BmgT120I GGNCC 1 cut(s) 183
BmiI GGNNCC 1 cut(s) 613
BmrFI CCNGG 1 cut(s) 581
BpiI GAAGAC 2 cut(s) 324, 357
Bpu10I CCTNAGC 1 cut(s) 356
BsaI GGTCTC 1 cut(s) 155
BsaXI ACNNNNNCTCC 2 cut(s) 450, 480
Bsc4I CCNNNNNNNGG 2 cut(s) 262, 552
Bse1I ACTGG 1 cut(s) 27
BseBI CCWGG 1 cut(s) 581
BseGI GGATG 1 cut(s) 48
BseLI CCNNNNNNNGG 2 cut(s) 262, 552
BseMII CTCAG 1 cut(s) 86
BseNI ACTGG 1 cut(s) 27
BseRI GAGGAG 1 cut(s) 583
Bsh1236I CGCG 2 cut(s) 148, 510
BshFI GGCC 3 cut(s) 95, 185, 243
BsiHKCI CYCGRG 1 cut(s) 414
BslI CCNNNNNNNGG 2 cut(s) 262, 552
BsmAI GTCTC 2 cut(s) 155, 167
BsnI GGCC 3 cut(s) 95, 185, 243
Bso31I GGTCTC 1 cut(s) 155
BsoBI CYCGRG 1 cut(s) 414
Bsp143I GATC 2 cut(s) 585, 611
BspACI CCGC 5 cut(s) 89, 146, 190, 485, 510
BspANI GGCC 3 cut(s) 95, 185, 243
BspCNI CTCAG 1 cut(s) 85
BspFNI CGCG 2 cut(s) 148, 510
BspLI GGNNCC 1 cut(s) 613
BspPI GGATC 2 cut(s) 606, 619
BspTNI GGTCTC 1 cut(s) 155
BsrI ACTGG 1 cut(s) 27
BssMI GATC 2 cut(s) 585, 611
Bst2UI CCWGG 1 cut(s) 581
Bst4CI ACNGT 3 cut(s) 45, 547, 561
BstC8I GCNNGC 1 cut(s) 97
BstDEI CTNAG 2 cut(s) 72, 356
BstF5I GGATG 1 cut(s) 48
BstFNI CGCG 2 cut(s) 148, 510
BstKTI GATC 2 cut(s) 588, 614
BstMAI GTCTC 2 cut(s) 155, 167
BstMBI GATC 2 cut(s) 585, 611
BstMWI GCNNNNNNNGC 2 cut(s) 154, 366
BstNI CCWGG 1 cut(s) 581
BstSCI CCNGG 1 cut(s) 579
BstUI CGCG 2 cut(s) 148, 510
BstV2I GAAGAC 2 cut(s) 324, 357
BstX2I RGATCY 1 cut(s) 611
BstYI RGATCY 1 cut(s) 611
BsuRI GGCC 3 cut(s) 95, 185, 243
BtsCI GGATG 1 cut(s) 48
BtsIMutI CAGTG 1 cut(s) 566
Cac8I GCNNGC 1 cut(s) 97
Cfr13I GGNCC 1 cut(s) 183
CseI GACGC 1 cut(s) 257
CspCI CAANNNNNGTGG 2 cut(s) 317, 352
CviAII CATG 6 cut(s) 158, 245, 347, 394, 551, 605
CviJI RGCY 8 cut(s) 95, 140, 185, 243, 332, 377, 419, 625
CviKI_1 RGCY 8 cut(s) 95, 140, 185, 243, 332, 377, 419, 625
DdeI CTNAG 2 cut(s) 72, 356
DpnI GATC 2 cut(s) 587, 613
DpnII GATC 2 cut(s) 585, 611
EaeI YGGCCR 1 cut(s) 241
Eco31I GGTCTC 1 cut(s) 155
Eco32I GATATC 1 cut(s) 538
Eco57I CTGAAG 1 cut(s) 143
Eco88I CYCGRG 1 cut(s) 414
EcoRII CCWGG 1 cut(s) 579
EcoRV GATATC 1 cut(s) 538
FaeI CATG 6 cut(s) 161, 248, 350, 397, 554, 608
FatI CATG 6 cut(s) 157, 244, 346, 393, 550, 604
FauI CCCGC 1 cut(s) 492
Fnu4HI GCNGC 1 cut(s) 511
FokI GGATG 1 cut(s) 35
Fsp4HI GCNGC 1 cut(s) 511
FspBI CTAG 1 cut(s) 57
GluI GCNGC 1 cut(s) 511
HaeIII GGCC 3 cut(s) 95, 185, 243
HgaI GACGC 1 cut(s) 257
Hin1II CATG 6 cut(s) 161, 248, 350, 397, 554, 608
HincII GTYRAC 1 cut(s) 271
HindII GTYRAC 1 cut(s) 271
HindIII AAGCTT 1 cut(s) 375
HinfI GANTC 3 cut(s) 175, 288, 520
HphI GGTGA 3 cut(s) 20, 535, 595
Hpy166II GTNNAC 1 cut(s) 271
Hpy8I GTNNAC 1 cut(s) 271
HpyAV CCTTC 3 cut(s) 435, 449, 559
HpyCH4III ACNGT 3 cut(s) 45, 547, 561
HpyCH4IV ACGT 1 cut(s) 324
HpyCH4V TGCA 1 cut(s) 550
HpyF10VI GCNNNNNNNGC 2 cut(s) 154, 366
HpyF3I CTNAG 2 cut(s) 72, 356
HpySE526I ACGT 1 cut(s) 324
Hsp92II CATG 6 cut(s) 161, 248, 350, 397, 554, 608
Kzo9I GATC 2 cut(s) 585, 611
LpnPI CCDG 5 cut(s) 8, 109, 326, 566, 593
MaeI CTAG 1 cut(s) 57
MaeII ACGT 1 cut(s) 324
MalI GATC 2 cut(s) 587, 613
MboI GATC 2 cut(s) 585, 611
MboII GAAGA 5 cut(s) 136, 329, 362, 545, 580
MflI RGATCY 1 cut(s) 611
MlsI TGGCCA 1 cut(s) 243
MluCI AATT 2 cut(s) 445, 497
MluNI TGGCCA 1 cut(s) 243
MlyI GAGTC 3 cut(s) 169, 297, 514
MmeI TCCRAC 1 cut(s) 114
MnlI CCTC 4 cut(s) 85, 223, 551, 604
Mox20I TGGCCA 1 cut(s) 243
MscI TGGCCA 1 cut(s) 243
MseI TTAA 1 cut(s) 573
Msp20I TGGCCA 1 cut(s) 243
MspR9I CCNGG 1 cut(s) 581
MvaI CCWGG 1 cut(s) 581
MvnI CGCG 2 cut(s) 148, 510
MwoI GCNNNNNNNGC 2 cut(s) 154, 366
NdeII GATC 2 cut(s) 585, 611
NlaIII CATG 6 cut(s) 161, 248, 350, 397, 554, 608
NlaIV GGNNCC 1 cut(s) 613
PaeR7I CTCGAG 1 cut(s) 414
PcsI WCGNNNNNNNCGW 1 cut(s) 412
PflFI GACNNNGTC 1 cut(s) 251
PkrI GCNGC 1 cut(s) 512
PleI GAGTC 3 cut(s) 169, 296, 514
PpsI GAGTC 3 cut(s) 169, 296, 514
Psp6I CCWGG 1 cut(s) 579
PspGI CCWGG 1 cut(s) 579
PspN4I GGNNCC 1 cut(s) 613
PspPI GGNCC 1 cut(s) 183
PspXI VCTCGAGB 1 cut(s) 414
PsuI RGATCY 1 cut(s) 611
PsyI GACNNNGTC 1 cut(s) 251
SaqAI TTAA 1 cut(s) 573
SatI GCNGC 1 cut(s) 511
Sau3AI GATC 2 cut(s) 585, 611
Sau96I GGNCC 1 cut(s) 183
SchI GAGTC 3 cut(s) 169, 297, 514
ScrFI CCNGG 1 cut(s) 581
SetI ASST 8 cut(s) 142, 215, 226, 262, 327, 334, 357, 379
Sfr274I CTCGAG 1 cut(s) 414
SlaI CTCGAG 1 cut(s) 414
SmlI CTYRAG 1 cut(s) 414
SmoI CTYRAG 1 cut(s) 414
Sse9I AATT 2 cut(s) 445, 497
SsiI CCGC 5 cut(s) 89, 146, 190, 485, 510
SspMI CTAG 1 cut(s) 57
StyD4I CCNGG 1 cut(s) 579
TaaI ACNGT 3 cut(s) 45, 547, 561
TaiI ACGT 1 cut(s) 327
TaqI TCGA 3 cut(s) 197, 215, 415
TasI AATT 2 cut(s) 445, 497
TauI GCSGC 1 cut(s) 513
Tru1I TTAA 1 cut(s) 573
Tru9I TTAA 1 cut(s) 573
TscAI CASTG 1 cut(s) 566
TspDTI ATGAA 2 cut(s) 37, 363
TspRI CASTG 1 cut(s) 566
Tth111I GACNNNGTC 1 cut(s) 251
XhoI CTCGAG 1 cut(s) 414
XspI CTAG 1 cut(s) 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.