RchiOBHm_Chr7g0239101

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000160
Physical Location & Seq
Reverse (-)
64574902 .. 64575742
841 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21425

Sequence Viewer

Length: 426 bp
ATGTTGCCAATGGAAATTACAGTCAGATCATTGAGAGTCGCAATGCAAAATAATCTAACGGCCGACGAATATAGTCAGGCAATGTTGCAAGAACTAGAGGATCTTGACCAGGCGCGGTTAGATGCATATGATCGGCTTCAAGCTCAAAAGAAGGTTGTCGCTCGTGCTTACAATAAAAAGACCAAATACAAGAGTTTTGGCGAAGGCGAGTTGGTTTGGAAAGCAGTGTTACCCATCGGCACAAAGGATCCCAGATTTGGAAAATGGTCACCAAATTGGGAGGGTCCGTTTATTATTGACAAAGTTCTTGGAAAAGGAGCATATCATTTGAGAGATAAAGATGGTGAACGACACGCAATGCCCATTAATGGCCAATACCTAAAGAAACATTATCCCACAATGTGGGAAGCGCGAGCTGCTGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

141

Amino Acids

16.31

Weight (kDa)

9.22

Isoelectric Point (pI)

33.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000160)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11612 FvH4_2g25851 FvH4_3g22802 FvH4_3g22805 FvH4_3g31361 FvH4_3g31382 FvH4_4g05272 FvH4_4g05273 FvH4_4g14567 FvH4_4g15161 FvH4_5g22540 FvH4_6g13113 FvH4_6g31923 FvH4_6g31924 FvH4_6g33651 FvH4_6g45122 FvH4_7g03662
pyrus_communis pycom01g04240 pycom01g24010 pycom02g18210 pycom02g19420 pycom05g06510 pycom09g15750 pycom09g18940 pycom12g02580 pycom12g03100 pycom12g08310 pycom13g22710 pycom13g28060 pycom16g18340 pycom16g18350 pycom16g24880 pycom16g26240 pycom461g00260 pycom520g00980 pycom520g01320
rosa_chinensis RchiOBHm_Chr1g0320731 RchiOBHm_Chr2g0102771 RchiOBHm_Chr3g0462151 RchiOBHm_Chr5g0038141 RchiOBHm_Chr5g0069371 RchiOBHm_Chr7g0239101
rosa_multiflora Rmu_co8038252.1_g000001 Rmu_co8138412.1_g000001 Rmu_co8331087.1_g000001 Rmu_co8479311.1_g000001 Rmu_sc0000112.1_g000018 Rmu_sc0000346.1_g000012 Rmu_sc0002102.1_g000002 Rmu_sc0003505.1_g000013 Rmu_sc0004249.1_g000007 Rmu_sc0004448.1_g000010 Rmu_sc0004594.1_g000011 Rmu_sc0004915.1_g000010 Rmu_sc0008019.1_g000019 Rmu_sc0008303.1_g000001 Rmu_sc0008355.1_g000005 Rmu_sc0009253.1_g000018 Rmu_sc0010211.1_g000002 Rmu_sc0010252.1_g000009 Rmu_sc0011534.1_g000008 Rmu_sc0014811.1_g000009 Rmu_sc0019475.1_g000001 Rmu_sc0024897.1_g000001 Rmu_sc0024898.1_g000001 Rmu_sc0031791.1_g000001 Rmu_sc0038715.1_g000001
rosa_roxburghii Rroxscaffold_165G00436940 Rroxscaffold_174G00435270 Rroxscaffold_177G00434330 Rroxscaffold_177G00434340 Rroxscaffold_177G00434350 Rroxscaffold_1G00002160 Rroxscaffold_1G00025260 Rroxscaffold_1G00042950 Rroxscaffold_1G00068010 Rroxscaffold_2G00107530 Rroxscaffold_3G00221190 Rroxscaffold_3G00221520 Rroxscaffold_3G00223200 Rroxscaffold_4G00322230 Rroxscaffold_4G00331810 Rroxscaffold_5G00385150 Rroxscaffold_5G00387510 Rroxscaffold_6G00410520 Rroxscaffold_6G00423360 Rroxscaffold_6G00423370 Rroxscaffold_6G00429210 Rroxscaffold_7G00158300 Rroxscaffold_7G00163480 Rroxscaffold_7G00171410 Rroxscaffold_7G00178940 Rroxscaffold_7G00199480 Rroxscaffold_7G00205630 Rroxscaffold_7G00207440
rosa_rugosa Rorug01G0056400 Rorug04G0063900 Rorug05G0251400 Rorug07G0221900
rosa_samantha Rh1DG169400 Rh2AG292900 Rh2DG519200 Rh4DG260600 Rh5AG042600 Rh6BG117500
rosa_wichuraiana Rw0G001900 Rw0G005150 Rw0G006380 Rw0G015140 Rw0G016320 Rw0G019440 Rw0G019840 Rw0G023740 Rw1G001590 Rw1G002180 Rw1G003560 Rw1G004280 Rw1G006110 Rw1G006680 Rw1G007920 Rw1G008480 Rw1G009120 Rw1G010310 Rw1G014900 Rw1G019650 Rw1G022070 Rw1G022170 Rw1G041570 Rw2G002740 Rw2G005760 Rw2G032370 Rw2G046770 Rw2G050600 Rw2G051420 Rw3G015930 Rw3G016280 Rw3G019580 Rw3G028420 Rw4G003430 Rw4G005350 Rw4G007530 Rw4G008150 Rw4G009580 Rw4G010250 Rw4G015800 Rw4G017000 Rw4G017910 Rw4G018510 Rw4G019700 Rw4G031010 Rw5G012650 Rw5G020140 Rw5G022060 Rw5G034420 Rw5G035560 Rw5G043010 Rw5G046750 Rw5G047340 Rw5G049500 Rw6G001390 Rw6G002210 Rw6G004530 Rw6G004770 Rw6G005100 Rw6G005890 Rw6G011860 Rw6G014680 Rw6G019480 Rw6G028970 Rw6G033800 Rw7G013050 Rw7G014800 Rw7G025760 Rw7G025850 Rw7G026730 Rw7G026870 Rw7G036330 Rw7G036430 Rw7G039320 Rw7G039510 Rw7G039560 Rw7G041370 Rw7G042050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 402
AccII CGCG 2 cut(s) 115, 412
AciI CCGC 1 cut(s) 115
AclWI GGATC 3 cut(s) 108, 242, 255
AcoI YGGCCR 2 cut(s) 60, 370
AdeI CACNNNGTG 1 cut(s) 402
AfiI CCNNNNNNNGG 3 cut(s) 257, 368, 402
AgsI TTSAA 1 cut(s) 140
AjnI CCWGG 1 cut(s) 108
AluBI AGCT 2 cut(s) 143, 416
AluI AGCT 2 cut(s) 143, 416
AlwI GGATC 3 cut(s) 108, 242, 255
AoxI GGCC 2 cut(s) 60, 370
ApeKI GCWGC 1 cut(s) 416
AseI ATTAAT 1 cut(s) 366
AspLEI GCGC 2 cut(s) 115, 412
AspS9I GGNCC 1 cut(s) 284
AsuHPI GGTGA 2 cut(s) 261, 356
AvaII GGWCC 1 cut(s) 284
BalI TGGCCA 1 cut(s) 372
BamHI GGATCC 1 cut(s) 247
BauI CACGAG 1 cut(s) 162
BbvI GCAGC 1 cut(s) 403
BccI CCATC 2 cut(s) 242, 335
BceAI ACGGC 1 cut(s) 75
BciT130I CCWGG 1 cut(s) 110
BfaI CTAG 1 cut(s) 95
BisI GCNGC 1 cut(s) 417
BlsI GCNGC 1 cut(s) 418
Bme1390I CCNGG 1 cut(s) 110
Bme18I GGWCC 1 cut(s) 284
BmgT120I GGNCC 1 cut(s) 284
BmiI GGNNCC 2 cut(s) 249, 285
BmrFI CCNGG 1 cut(s) 110
BmsI GCATC 1 cut(s) 112
BsaXI ACNNNNNCTCC 2 cut(s) 272, 302
Bsc4I CCNNNNNNNGG 3 cut(s) 257, 368, 402
Bse3DI GCAATG 3 cut(s) 48, 87, 363
BseBI CCWGG 1 cut(s) 110
BseLI CCNNNNNNNGG 3 cut(s) 257, 368, 402
BseMI GCAATG 3 cut(s) 48, 87, 363
BseX3I CGGCCG 1 cut(s) 60
BseXI GCAGC 1 cut(s) 403
Bsh1236I CGCG 2 cut(s) 115, 412
Bsh1285I CGRYCG 1 cut(s) 63
BshFI GGCC 2 cut(s) 62, 372
BsiEI CGRYCG 1 cut(s) 63
BslI CCNNNNNNNGG 3 cut(s) 257, 368, 402
BsnI GGCC 2 cut(s) 62, 372
Bsp143I GATC 4 cut(s) 26, 100, 130, 247
BspACI CCGC 1 cut(s) 115
BspANI GGCC 2 cut(s) 62, 372
BspFNI CGCG 2 cut(s) 115, 412
BspLI GGNNCC 2 cut(s) 249, 285
BspPI GGATC 3 cut(s) 108, 242, 255
BsrDI GCAATG 3 cut(s) 48, 87, 363
BssMI GATC 4 cut(s) 26, 100, 130, 247
BssSI CACGAG 1 cut(s) 162
Bst2BI CACGAG 1 cut(s) 162
Bst2UI CCWGG 1 cut(s) 110
Bst4CI ACNGT 1 cut(s) 22
BstC8I GCNNGC 1 cut(s) 414
BstEII GGTNACC 1 cut(s) 267
BstFNI CGCG 2 cut(s) 115, 412
BstHHI GCGC 2 cut(s) 115, 412
BstKTI GATC 4 cut(s) 29, 103, 133, 250
BstMBI GATC 4 cut(s) 26, 100, 130, 247
BstMCI CGRYCG 1 cut(s) 63
BstMWI GCNNNNNNNGC 1 cut(s) 416
BstNI CCWGG 1 cut(s) 110
BstPI GGTNACC 1 cut(s) 267
BstSCI CCNGG 1 cut(s) 108
BstUI CGCG 2 cut(s) 115, 412
BstV1I GCAGC 1 cut(s) 403
BstX2I RGATCY 2 cut(s) 100, 247
BstYI RGATCY 2 cut(s) 100, 247
BstZI CGGCCG 1 cut(s) 60
BsuRI GGCC 2 cut(s) 62, 372
BtsI GCAGTG 1 cut(s) 231
BtsIMutI CAGTG 1 cut(s) 231
Cac8I GCNNGC 1 cut(s) 414
CfoI GCGC 2 cut(s) 115, 412
Cfr13I GGNCC 1 cut(s) 284
CviJI RGCY 5 cut(s) 62, 136, 143, 372, 416
CviKI_1 RGCY 5 cut(s) 62, 136, 143, 372, 416
DpnI GATC 4 cut(s) 28, 102, 132, 249
DpnII GATC 4 cut(s) 26, 100, 130, 247
DraIII CACNNNGTG 1 cut(s) 402
EaeI YGGCCR 2 cut(s) 60, 370
EagI CGGCCG 1 cut(s) 60
EclXI CGGCCG 1 cut(s) 60
Eco47I GGWCC 1 cut(s) 284
Eco52I CGGCCG 1 cut(s) 60
Eco91I GGTNACC 1 cut(s) 267
EcoO65I GGTNACC 1 cut(s) 267
EcoRII CCWGG 1 cut(s) 108
EcoT22I ATGCAT 1 cut(s) 127
FaiI YATR 4 cut(s) 72, 127, 129, 322
FauNDI CATATG 1 cut(s) 127
Fnu4HI GCNGC 1 cut(s) 417
Fsp4HI GCNGC 1 cut(s) 417
FspBI CTAG 1 cut(s) 95
GlaI GCGC 2 cut(s) 114, 411
GluI GCNGC 1 cut(s) 417
HaeIII GGCC 2 cut(s) 62, 372
HhaI GCGC 2 cut(s) 115, 412
Hin6I GCGC 2 cut(s) 113, 410
HinP1I GCGC 2 cut(s) 113, 410
HinfI GANTC 1 cut(s) 36
HphI GGTGA 2 cut(s) 261, 356
Hpy166II GTNNAC 1 cut(s) 347
Hpy188I TCNGA 1 cut(s) 26
Hpy188III TCNNGA 1 cut(s) 104
Hpy8I GTNNAC 1 cut(s) 347
Hpy99I CGWCG 1 cut(s) 68
HpyAV CCTTC 2 cut(s) 145, 197
HpyCH4III ACNGT 1 cut(s) 22
HpyCH4V TGCA 3 cut(s) 46, 88, 125
HpyF10VI GCNNNNNNNGC 1 cut(s) 416
HspAI GCGC 2 cut(s) 113, 410
Kzo9I GATC 4 cut(s) 26, 100, 130, 247
LmnI GCTCC 1 cut(s) 317
LpnPI CCDG 4 cut(s) 62, 95, 122, 265
Lsp1109I GCAGC 1 cut(s) 403
LweI GCATC 1 cut(s) 112
MaeI CTAG 1 cut(s) 95
MaeIII GTNAC 2 cut(s) 228, 267
MalI GATC 4 cut(s) 28, 102, 132, 249
MboI GATC 4 cut(s) 26, 100, 130, 247
MflI RGATCY 2 cut(s) 100, 247
MlsI TGGCCA 1 cut(s) 372
MluCI AATT 2 cut(s) 15, 274
MluNI TGGCCA 1 cut(s) 372
MlyI GAGTC 1 cut(s) 45
MnlI CCTC 2 cut(s) 91, 274
Mox20I TGGCCA 1 cut(s) 372
Mph1103I ATGCAT 1 cut(s) 127
MscI TGGCCA 1 cut(s) 372
MseI TTAA 1 cut(s) 366
Msp20I TGGCCA 1 cut(s) 372
MspR9I CCNGG 1 cut(s) 110
MvaI CCWGG 1 cut(s) 110
MvnI CGCG 2 cut(s) 115, 412
MwoI GCNNNNNNNGC 1 cut(s) 416
NdeI CATATG 1 cut(s) 127
NdeII GATC 4 cut(s) 26, 100, 130, 247
NlaIV GGNNCC 2 cut(s) 249, 285
NmuCI GTSAC 1 cut(s) 267
NsiI ATGCAT 1 cut(s) 127
PflMI CCANNNNNTGG 1 cut(s) 402
PkrI GCNGC 1 cut(s) 418
PleI GAGTC 1 cut(s) 44
PpsI GAGTC 1 cut(s) 44
PshBI ATTAAT 1 cut(s) 366
Psp6I CCWGG 1 cut(s) 108
PspEI GGTNACC 1 cut(s) 267
PspGI CCWGG 1 cut(s) 108
PspN4I GGNNCC 2 cut(s) 249, 285
PspPI GGNCC 1 cut(s) 284
PsuI RGATCY 2 cut(s) 100, 247
SaqAI TTAA 1 cut(s) 366
SatI GCNGC 1 cut(s) 417
Sau3AI GATC 4 cut(s) 26, 100, 130, 247
Sau96I GGNCC 1 cut(s) 284
SchI GAGTC 1 cut(s) 45
ScrFI CCNGG 1 cut(s) 110
SetI ASST 4 cut(s) 145, 156, 381, 418
SfaNI GCATC 1 cut(s) 112
SinI GGWCC 1 cut(s) 284
Sse9I AATT 2 cut(s) 15, 274
SsiI CCGC 1 cut(s) 115
SspMI CTAG 1 cut(s) 95
StyD4I CCNGG 1 cut(s) 108
TaaI ACNGT 1 cut(s) 22
TasI AATT 2 cut(s) 15, 274
Tru1I TTAA 1 cut(s) 366
Tru9I TTAA 1 cut(s) 366
TscAI CASTG 1 cut(s) 231
TseFI GTSAC 1 cut(s) 267
TseI GCWGC 1 cut(s) 416
Tsp45I GTSAC 1 cut(s) 267
TspGWI ACGGA 1 cut(s) 276
TspRI CASTG 1 cut(s) 231
Van91I CCANNNNNTGG 1 cut(s) 402
VpaK11BI GGWCC 1 cut(s) 284
VspI ATTAAT 1 cut(s) 366
XspI CTAG 1 cut(s) 95
Zsp2I ATGCAT 1 cut(s) 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.