Rw6G011860

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000160
Physical Location & Seq
Forward (+)
21275103 .. 21277310
2208 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G011860.1

Sequence Viewer

Length: 2151 bp
ATGCCTGAGCCAAGAAATCTGCGCGAGTTAAAAAGTCTCCAAGGTCGGCTTGCCTTTATTAGACGGTTTATATCAAACCTCGCAGGCTGGTGTCAGCCATTTAGTCGACTTCTGAAGAAGGATGTGCCTTTTGTATGGGATGAAGCTTGCCATAACACCTTTGAAAGCATAAAGAAGTACTTGGCAAAACCTCTAGTGTTAGTTGCACCCATCCTTGGGAAGCCACTTATCCTCTACATTGCTGCTCAAGAGCGATCACTCGGGGCACTTCTAGCTCAAGAAAATGAAGCAAAGAAGGAGAGGGCGTTGTATTACTTGAGTCGAACTCTCATAGGACCGGAACTAAACTATCCGCCAATAGAGAAAATCTGTCTCGCGCTTGTCTTCGCCATCCAAAAGTTAAGACATTACATGCAAGCTTACACAGTGCATCTAGTGGCGCGAGCTGACCCAGTCAAGTTCGTTATGTCACAACCCGTCTTGATAGGGCGAATGGCAAAATGGGCACTACTCCTCAATCAGTATGAGATCATCTACATACCGGCCAAAGCAGTTAAAGGACAAGCATTGGCTGACTTCCTAGCGGATCATCCTATTCCTGCGGATTGGGAGATTTCAGATGAGTTGCCAGATGAAGAAGTATTTAATACAGAGGTCCTCCCTGCTTGGCAAATGTTCTTCGATGGGTCTTCACGAGCAAATGGGGCAGGAGCTGGTGTGGTCTTCATTTCTCCGCAAAGGCAGATATTGCCTTATGCCTTTACTCTTGGTGAGTTATGTTCCAATAATGTTGCTGAGTACCAAGCGCTAATTATGGGACTACAAACCGCAACTGAAATGAAAATCTCAAATCTAGAGAAAGAGGATTTAGTTCCTTATTTTCAGCTCGCCACACAACTCTTAAAGGGTTTTGATGTTGTCACACTAACGCATGTGCCAAGAAAAGAAAATCAAACAGCAGACGCTTTGGCCAACTTAGCAACAACTTTGGCATTATCAGAGGATGAAATCATACACCTTCCAATCTGCCAACGGTGGGTCGTACCAACAATCTCTGAGCTTTGGCATGAATACTCCAATGTTGTCTCTGTTTACGTGATTGATGTGGTTGACTGGAGGTACCCGTTGATTGATTACCTTGAGCGAAATAAGTTGTCTGATGACCCAAAGCAACGCTTGGACATAAGACGAAGAGTATCACGCTTCTTCTATTATAAGGAGACTCTTTATCGACGATCATTCGATGGATTGCTTCTTAGATGTCTGGGGAAAGAGGAAGCTGCCAAGGCTATGGAGGAAGCTCATTCAGGAGTATGCGGAGCTCACCAGTCAGGTCCTAAGCTCCATTTTCAAGTGAAGAGGATGGGTTACTATTGGCCCACTATGGTTAAAGATTGCATGGAGTATGCACAAAGGTGTCAGGCTTGCCAGTTTCATGCAAACTTCATCCATCAACCACCAGAGCCACTGCATCCAACGATTGCTTCCTACCCCTTCGATGTGTGGGGACTTGATGCTATTGGGCCCATAACTCCGAAATCCTCCGCCAGTCACTCATACATTCTAGCGGATACGGATTCCTTTTCAAAGTGGGCAGAGGCGATACCGCTTAAAGAAATAAAGAAAGAAAATGTTGTAGACTTCATCAAAGGGAATATCATTCAACGATATGGCATCCCTCACTGCATCATCACAGACAATGCCAAGTACTTTTCCAATAGTGCCATGGAGAAACTCTGTGAAAAATATCACTTCAAGTTACGCTTTTCTTCTATGTACAACGCCCCGGCAAATGGGTTGGCTGAAGCATTCAACAAGACATTGTGTAACATTTTGAAGAAAGTTGTCAGCAAAACAAAAAGGGATTGGCATGAAAGAATGGGCGAGGTGCTTTGGGCCTATAGAACGACATATCGAACTCCCACGAAAGCTACACCTTACTCCCTTGTATATGGTGTTGAAGCCGTCTTACCCTTGGAGAAACAGATTCCATCTTTGAGGATTGCTTTGCAAGAAGGACTGACTGATGAAGAGAACGTCAAGTTACGCCTTCAGGAGTTGGAATCCTTAGATGAAAAGAGACTTGACGCGCAACAGCACTTGGAATGCTATCAAGCTCGAATGGCACGAGCTTTCAACAAAGGGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

716

Amino Acids

81.98

Weight (kDa)

8.2

Isoelectric Point (pI)

44.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RT_RNaseH_2 PF17919 46 - 143 3.6e-21 RNase H-like domain found in reverse transcriptase
RT_RNaseH PF17917 74 - 175 3.9e-23 RNase H-like domain found in reverse transcriptase
Integrase_H2C2 PF17921 425 - 478 2.9e-08 Integrase zinc binding domain
rve PF00665 498 - 594 1.2e-08 Integrase core domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000160)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11612 FvH4_2g25851 FvH4_3g22802 FvH4_3g22805 FvH4_3g31361 FvH4_3g31382 FvH4_4g05272 FvH4_4g05273 FvH4_4g14567 FvH4_4g15161 FvH4_5g22540 FvH4_6g13113 FvH4_6g31923 FvH4_6g31924 FvH4_6g33651 FvH4_6g45122 FvH4_7g03662
pyrus_communis pycom01g04240 pycom01g24010 pycom02g18210 pycom02g19420 pycom05g06510 pycom09g15750 pycom09g18940 pycom12g02580 pycom12g03100 pycom12g08310 pycom13g22710 pycom13g28060 pycom16g18340 pycom16g18350 pycom16g24880 pycom16g26240 pycom461g00260 pycom520g00980 pycom520g01320
rosa_chinensis RchiOBHm_Chr1g0320731 RchiOBHm_Chr2g0102771 RchiOBHm_Chr3g0462151 RchiOBHm_Chr5g0038141 RchiOBHm_Chr5g0069371 RchiOBHm_Chr7g0239101
rosa_multiflora Rmu_co8038252.1_g000001 Rmu_co8138412.1_g000001 Rmu_co8331087.1_g000001 Rmu_co8479311.1_g000001 Rmu_sc0000112.1_g000018 Rmu_sc0000346.1_g000012 Rmu_sc0002102.1_g000002 Rmu_sc0003505.1_g000013 Rmu_sc0004249.1_g000007 Rmu_sc0004448.1_g000010 Rmu_sc0004594.1_g000011 Rmu_sc0004915.1_g000010 Rmu_sc0008019.1_g000019 Rmu_sc0008303.1_g000001 Rmu_sc0008355.1_g000005 Rmu_sc0009253.1_g000018 Rmu_sc0010211.1_g000002 Rmu_sc0010252.1_g000009 Rmu_sc0011534.1_g000008 Rmu_sc0014811.1_g000009 Rmu_sc0019475.1_g000001 Rmu_sc0024897.1_g000001 Rmu_sc0024898.1_g000001 Rmu_sc0031791.1_g000001 Rmu_sc0038715.1_g000001
rosa_roxburghii Rroxscaffold_165G00436940 Rroxscaffold_174G00435270 Rroxscaffold_177G00434330 Rroxscaffold_177G00434340 Rroxscaffold_177G00434350 Rroxscaffold_1G00002160 Rroxscaffold_1G00025260 Rroxscaffold_1G00042950 Rroxscaffold_1G00068010 Rroxscaffold_2G00107530 Rroxscaffold_3G00221190 Rroxscaffold_3G00221520 Rroxscaffold_3G00223200 Rroxscaffold_4G00322230 Rroxscaffold_4G00331810 Rroxscaffold_5G00385150 Rroxscaffold_5G00387510 Rroxscaffold_6G00410520 Rroxscaffold_6G00423360 Rroxscaffold_6G00423370 Rroxscaffold_6G00429210 Rroxscaffold_7G00158300 Rroxscaffold_7G00163480 Rroxscaffold_7G00171410 Rroxscaffold_7G00178940 Rroxscaffold_7G00199480 Rroxscaffold_7G00205630 Rroxscaffold_7G00207440
rosa_rugosa Rorug01G0056400 Rorug04G0063900 Rorug05G0251400 Rorug07G0221900
rosa_samantha Rh1DG169400 Rh2AG292900 Rh2DG519200 Rh4DG260600 Rh5AG042600 Rh6BG117500
rosa_wichuraiana Rw0G001900 Rw0G005150 Rw0G006380 Rw0G015140 Rw0G016320 Rw0G019440 Rw0G019840 Rw0G023740 Rw1G001590 Rw1G002180 Rw1G003560 Rw1G004280 Rw1G006110 Rw1G006680 Rw1G007920 Rw1G008480 Rw1G009120 Rw1G010310 Rw1G014900 Rw1G019650 Rw1G022070 Rw1G022170 Rw1G041570 Rw2G002740 Rw2G005760 Rw2G032370 Rw2G046770 Rw2G050600 Rw2G051420 Rw3G015930 Rw3G016280 Rw3G019580 Rw3G028420 Rw4G003430 Rw4G005350 Rw4G007530 Rw4G008150 Rw4G009580 Rw4G010250 Rw4G015800 Rw4G017000 Rw4G017910 Rw4G018510 Rw4G019700 Rw4G031010 Rw5G012650 Rw5G020140 Rw5G022060 Rw5G034420 Rw5G035560 Rw5G043010 Rw5G046750 Rw5G047340 Rw5G049500 Rw6G001390 Rw6G002210 Rw6G004530 Rw6G004770 Rw6G005100 Rw6G005890 Rw6G011860 Rw6G014680 Rw6G019480 Rw6G028970 Rw6G033800 Rw7G013050 Rw7G014800 Rw7G025760 Rw7G025850 Rw7G026730 Rw7G026870 Rw7G036330 Rw7G036430 Rw7G039320 Rw7G039510 Rw7G039560 Rw7G041370 Rw7G042050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1215
Acc65I GGTACC 1 cut(s) 1119
AccB1I GGYRCC 1 cut(s) 1119
AccI GTMKAC 2 cut(s) 106, 1638
AccII CGCG 4 cut(s) 24, 377, 442, 2090
AciI CCGC 9 cut(s) 353, 584, 602, 734, 828, 1317, 1545, 1568, 1607
AclWI GGATC 1 cut(s) 594
AcoI YGGCCR 2 cut(s) 543, 969
AcuI CTGAAG 3 cut(s) 134, 1824, 2036
AfaI GTAC 6 cut(s) 179, 800, 1044, 1121, 1709, 1778
AfeI AGCGCT 1 cut(s) 807
AfiI CCNNNNNNNGG 4 cut(s) 215, 216, 1036, 1793
AgsI TTSAA 9 cut(s) 164, 1352, 1587, 1664, 1756, 1813, 1837, 1961, 2137
AjuI GAANNNNNNNTTGG 2 cut(s) 1468, 1500
AleI CACNNNNGTG 1 cut(s) 1414
Alw21I GWGCWC 1 cut(s) 1324
Alw26I GTCTC 5 cut(s) 41, 377, 1090, 1214, 2074
AlwI GGATC 1 cut(s) 594
AlwNI CAGNNNCTG 1 cut(s) 713
Ama87I CYCGRG 1 cut(s) 260
Aor51HI AGCGCT 1 cut(s) 807
AoxI GGCC 5 cut(s) 543, 969, 1376, 1523, 1896
ApaI GGGCCC 1 cut(s) 1527
ApeKI GCWGC 2 cut(s) 242, 1280
Asp718I GGTACC 1 cut(s) 1119
AspLEI GCGC 5 cut(s) 24, 379, 442, 808, 2092
AspS9I GGNCC 7 cut(s) 335, 655, 1334, 1377, 1523, 1524, 1896
AsuC2I CCSGG 1 cut(s) 1787
AsuHPI GGTGA 2 cut(s) 782, 1316
AvaI CYCGRG 1 cut(s) 260
AvaII GGWCC 3 cut(s) 335, 655, 1334
BaeGI GKGCMC 3 cut(s) 268, 508, 1527
BalI TGGCCA 1 cut(s) 971
BanI GGYRCC 1 cut(s) 1119
BanII GRGCYC 2 cut(s) 1324, 1527
BarI GAAGNNNNNNTAC 2 cut(s) 1953, 1985
BauI CACGAG 2 cut(s) 693, 2127
BbsI GAAGAC 3 cut(s) 376, 681, 715
Bbv12I GWGCWC 1 cut(s) 1324
BbvI GCAGC 2 cut(s) 229, 1267
BccI CCATC 7 cut(s) 218, 398, 677, 1238, 1357, 1458, 1999
BceAI ACGGC 1 cut(s) 1949
BciVI GTATCC 1 cut(s) 1564
BcnI CCSGG 1 cut(s) 1787
BcoDI GTCTC 5 cut(s) 41, 377, 1090, 1214, 2074
BfaI CTAG 6 cut(s) 194, 272, 434, 581, 854, 1565
BfmI CTRYAG 1 cut(s) 1900
BfoI RGCGCY 1 cut(s) 809
BfuI GTATCC 1 cut(s) 1564
BisI GCNGC 2 cut(s) 243, 1281
BlsI GCNGC 2 cut(s) 244, 1282
BmcAI AGTACT 2 cut(s) 179, 1709
Bme1390I CCNGG 1 cut(s) 1787
Bme18I GGWCC 3 cut(s) 335, 655, 1334
BmeT110I CYCGRG 1 cut(s) 260
BmgT120I GGNCC 7 cut(s) 335, 655, 1334, 1377, 1523, 1524, 1896
BmiI GGNNCC 2 cut(s) 1121, 1525
BmrFI CCNGG 1 cut(s) 1787
BmrI ACTGGG 1 cut(s) 446
BmsI GCATC 5 cut(s) 439, 1480, 1504, 1683, 1695
BmuI ACTGGG 1 cut(s) 446
BpiI GAAGAC 3 cut(s) 376, 681, 715
BplI GAGNNNNNCTC 2 cut(s) 310, 342
BpmI CTGGAG 1 cut(s) 1135
Bpu10I CCTNAGC 2 cut(s) 6, 1338
BpuEI CTTGAG 4 cut(s) 231, 261, 337, 1160
BpuMI CCSGG 1 cut(s) 1787
BsaAI YACGTR 1 cut(s) 1096
BsaJI CCNNGG 6 cut(s) 40, 214, 1284, 1725, 1785, 1974
BsaWI WCCGGW 1 cut(s) 337
BsaXI ACNNNNNCTCC 4 cut(s) 290, 320, 702, 732
Bsc4I CCNNNNNNNGG 4 cut(s) 215, 216, 1036, 1793
Bse118I RCCGGY 1 cut(s) 541
Bse1I ACTGG 5 cut(s) 452, 1118, 1327, 1429, 1548
Bse3DI GCAATG 1 cut(s) 237
BseDI CCNNGG 6 cut(s) 40, 214, 1284, 1725, 1785, 1974
BseLI CCNNNNNNNGG 4 cut(s) 215, 216, 1036, 1793
BseMI GCAATG 1 cut(s) 237
BseMII CTCAG 2 cut(s) 786, 1047
BseNI ACTGG 5 cut(s) 452, 1118, 1327, 1429, 1548
BseRI GAGGAG 1 cut(s) 503
BseSI GKGCMC 3 cut(s) 268, 508, 1527
BseXI GCAGC 2 cut(s) 229, 1267
Bsh1236I CGCG 4 cut(s) 24, 377, 442, 2090
BshFI GGCC 5 cut(s) 545, 971, 1378, 1525, 1898
BshNI GGYRCC 1 cut(s) 1119
BsiHKAI GWGCWC 1 cut(s) 1324
BsiHKCI CYCGRG 1 cut(s) 260
BsiSI CCGG 3 cut(s) 338, 542, 1787
BslFI GGGAC 2 cut(s) 831, 1521
BslI CCNNNNNNNGG 4 cut(s) 215, 216, 1036, 1793
BsmAI GTCTC 5 cut(s) 41, 377, 1090, 1214, 2074
BsmFI GGGAC 2 cut(s) 831, 1521
BsmI GAATGC 2 cut(s) 1808, 2111
BsnI GGCC 5 cut(s) 545, 971, 1378, 1525, 1898
BsoBI CYCGRG 1 cut(s) 260
Bsp120I GGGCCC 1 cut(s) 1523
Bsp1286I GDGCHC 4 cut(s) 268, 508, 1324, 1527
Bsp1407I TGTACA 1 cut(s) 1776
Bsp143I GATC 4 cut(s) 254, 528, 586, 1235
Bsp19I CCATGG 1 cut(s) 1725
BspACI CCGC 9 cut(s) 353, 584, 602, 734, 828, 1317, 1545, 1568, 1607
BspANI GGCC 5 cut(s) 545, 971, 1378, 1525, 1898
BspCNI CTCAG 2 cut(s) 787, 1048
BspFNI CGCG 4 cut(s) 24, 377, 442, 2090
BspLI GGNNCC 2 cut(s) 1121, 1525
BspPI GGATC 1 cut(s) 594
BspT107I GGYRCC 1 cut(s) 1119
BsrDI GCAATG 1 cut(s) 237
BsrFI RCCGGY 1 cut(s) 541
BsrGI TGTACA 1 cut(s) 1776
BsrI ACTGG 5 cut(s) 452, 1118, 1327, 1429, 1548
BssAI RCCGGY 1 cut(s) 541
BssECI CCNNGG 6 cut(s) 40, 214, 1284, 1725, 1785, 1974
BssMI GATC 4 cut(s) 254, 528, 586, 1235
BssSI CACGAG 2 cut(s) 693, 2127
BssT1I CCWWGG 5 cut(s) 40, 214, 1284, 1725, 1974
Bst2BI CACGAG 2 cut(s) 693, 2127
Bst4CI ACNGT 3 cut(s) 66, 427, 1035
Bst6I CTCTTC 3 cut(s) 1186, 1352, 2025
BstAPI GCANNNNNTGC 1 cut(s) 748
BstAUI TGTACA 1 cut(s) 1776
BstBAI YACGTR 1 cut(s) 1096
BstC8I GCNNGC 7 cut(s) 51, 85, 148, 417, 444, 888, 1426
BstDEI CTNAG 7 cut(s) 6, 795, 976, 1056, 1256, 1338, 2068
BstDSI CCRYGG 1 cut(s) 1725
BstFNI CGCG 4 cut(s) 24, 377, 442, 2090
BstH2I RGCGCY 1 cut(s) 809
BstHHI GCGC 5 cut(s) 24, 379, 442, 808, 2092
BstKTI GATC 4 cut(s) 257, 531, 589, 1238
BstMAI GTCTC 5 cut(s) 41, 377, 1090, 1214, 2074
BstMBI GATC 4 cut(s) 254, 528, 586, 1235
BstMWI GCNNNNNNNGC 7 cut(s) 272, 503, 704, 748, 977, 1286, 2123
BstNSI RCATGY 2 cut(s) 415, 935
BstSCI CCNGG 1 cut(s) 1785
BstSFI CTRYAG 1 cut(s) 1900
BstSLI GKGCMC 3 cut(s) 268, 508, 1527
BstUI CGCG 4 cut(s) 24, 377, 442, 2090
BstV1I GCAGC 2 cut(s) 229, 1267
BstV2I GAAGAC 3 cut(s) 376, 681, 715
BstXI CCANNNNNNTGG 1 cut(s) 1291
BsuI GTATCC 1 cut(s) 1564
BsuRI GGCC 5 cut(s) 545, 971, 1378, 1525, 1898
BtgI CCRYGG 1 cut(s) 1725
BtsI GCAGTG 2 cut(s) 1466, 1681
BtsIMutI CAGTG 3 cut(s) 432, 1466, 1681
Cac8I GCNNGC 7 cut(s) 51, 85, 148, 417, 444, 888, 1426
CaiI CAGNNNCTG 1 cut(s) 713
CfoI GCGC 5 cut(s) 24, 379, 442, 808, 2092
Cfr10I RCCGGY 1 cut(s) 541
Cfr13I GGNCC 7 cut(s) 335, 655, 1334, 1377, 1523, 1524, 1896
CseI GACGC 2 cut(s) 971, 2096
Csp6I GTAC 6 cut(s) 178, 799, 1043, 1120, 1708, 1777
CviAII CATG 7 cut(s) 412, 932, 1067, 1399, 1436, 1726, 1871
CviQI GTAC 6 cut(s) 178, 799, 1043, 1120, 1708, 1777
DdeI CTNAG 7 cut(s) 6, 795, 976, 1056, 1256, 1338, 2068
DpnI GATC 4 cut(s) 256, 530, 588, 1237
DpnII GATC 4 cut(s) 254, 528, 586, 1235
EaeI YGGCCR 2 cut(s) 543, 969
Eam1104I CTCTTC 3 cut(s) 1186, 1352, 2025
EarI CTCTTC 3 cut(s) 1186, 1352, 2025
EciI GGCGGA 2 cut(s) 342, 1534
Ecl136II GAGCTC 1 cut(s) 1322
Eco130I CCWWGG 5 cut(s) 40, 214, 1284, 1725, 1974
Eco24I GRGCYC 2 cut(s) 1324, 1527
Eco47I GGWCC 3 cut(s) 335, 655, 1334
Eco47III AGCGCT 1 cut(s) 807
Eco53kI GAGCTC 1 cut(s) 1322
Eco57I CTGAAG 3 cut(s) 134, 1824, 2036
Eco88I CYCGRG 1 cut(s) 260
EcoICRI GAGCTC 1 cut(s) 1322
EcoO109I RGGNCCY 2 cut(s) 655, 1334
EcoT14I CCWWGG 5 cut(s) 40, 214, 1284, 1725, 1974
EcoT38I GRGCYC 2 cut(s) 1324, 1527
ErhI CCWWGG 5 cut(s) 40, 214, 1284, 1725, 1974
FaeI CATG 7 cut(s) 415, 935, 1070, 1402, 1439, 1729, 1874
FalI AAGNNNNNCTT 8 cut(s) 33, 65, 164, 196, 1160, 1192, 1748, 1780
FaqI GGGAC 2 cut(s) 831, 1521
FatI CATG 7 cut(s) 411, 931, 1066, 1398, 1435, 1725, 1870
FblI GTMKAC 2 cut(s) 106, 1638
Fnu4HI GCNGC 2 cut(s) 243, 1281
FriOI GRGCYC 2 cut(s) 1324, 1527
Fsp4HI GCNGC 2 cut(s) 243, 1281
FspBI CTAG 6 cut(s) 194, 272, 434, 581, 854, 1565
GlaI GCGC 5 cut(s) 23, 378, 441, 807, 2091
GluI GCNGC 2 cut(s) 243, 1281
GsuI CTGGAG 1 cut(s) 1135
HaeII RGCGCY 1 cut(s) 809
HaeIII GGCC 5 cut(s) 545, 971, 1378, 1525, 1898
HapII CCGG 3 cut(s) 338, 542, 1787
HgaI GACGC 2 cut(s) 971, 2096
HhaI GCGC 5 cut(s) 24, 379, 442, 808, 2092
Hin1II CATG 7 cut(s) 415, 935, 1070, 1402, 1439, 1729, 1874
Hin6I GCGC 5 cut(s) 22, 377, 440, 806, 2090
HinP1I GCGC 5 cut(s) 22, 377, 440, 806, 2090
HincII GTYRAC 2 cut(s) 107, 1111
HindII GTYRAC 2 cut(s) 107, 1111
HindIII AAGCTT 2 cut(s) 144, 417
HinfI GANTC 5 cut(s) 319, 1222, 1577, 1987, 2063
HpaII CCGG 3 cut(s) 338, 542, 1787
HphI GGTGA 2 cut(s) 782, 1316
Hpy166II GTNNAC 4 cut(s) 107, 1093, 1111, 1639
Hpy188I TCNGA 6 cut(s) 114, 619, 1000, 1057, 1159, 1536
Hpy188III TCNNGA 7 cut(s) 248, 278, 481, 693, 854, 1308, 2054
Hpy8I GTNNAC 4 cut(s) 107, 1093, 1111, 1639
Hpy99I CGWCG 1 cut(s) 1236
HpyAV CCTTC 6 cut(s) 112, 289, 1028, 1504, 2009, 2060
HpyCH4III ACNGT 3 cut(s) 66, 427, 1035
HpyCH4IV ACGT 2 cut(s) 1095, 2037
HpyCH4V TGCA 9 cut(s) 206, 415, 430, 1398, 1409, 1439, 1471, 1686, 2011
HpyF10VI GCNNNNNNNGC 7 cut(s) 272, 503, 704, 748, 977, 1286, 2123
HpyF3I CTNAG 7 cut(s) 6, 795, 976, 1056, 1256, 1338, 2068
HpySE526I ACGT 2 cut(s) 1095, 2037
Hsp92II CATG 7 cut(s) 415, 935, 1070, 1402, 1439, 1729, 1874
HspAI GCGC 5 cut(s) 22, 377, 440, 806, 2090
KpnI GGTACC 1 cut(s) 1123
Kzo9I GATC 4 cut(s) 254, 528, 586, 1235
LmnI GCTCC 3 cut(s) 710, 1319, 1347
Lsp1109I GCAGC 2 cut(s) 229, 1267
LweI GCATC 5 cut(s) 439, 1480, 1504, 1683, 1695
MaeI CTAG 6 cut(s) 194, 272, 434, 581, 854, 1565
MaeII ACGT 2 cut(s) 1095, 2037
MaeIII GTNAC 7 cut(s) 468, 919, 1367, 1550, 1758, 1826, 2043
MalI GATC 4 cut(s) 256, 530, 588, 1237
MboI GATC 4 cut(s) 254, 528, 586, 1235
MhlI GDGCHC 4 cut(s) 268, 508, 1324, 1527
MlsI TGGCCA 1 cut(s) 971
MluCI AATT 1 cut(s) 810
MluNI TGGCCA 1 cut(s) 971
MlyI GAGTC 2 cut(s) 328, 1216
MmeI TCCRAC 2 cut(s) 1499, 2040
Mox20I TGGCCA 1 cut(s) 971
MscI TGGCCA 1 cut(s) 971
MseI TTAA 7 cut(s) 29, 401, 555, 645, 902, 1389, 1611
MslI CAYNNNNRTG 1 cut(s) 1414
Msp20I TGGCCA 1 cut(s) 971
MspI CCGG 3 cut(s) 338, 542, 1787
MspR9I CCNGG 1 cut(s) 1787
Mva1269I GAATGC 2 cut(s) 1808, 2111
MvnI CGCG 4 cut(s) 24, 377, 442, 2090
MwoI GCNNNNNNNGC 7 cut(s) 272, 503, 704, 748, 977, 1286, 2123
NciI CCSGG 1 cut(s) 1787
NcoI CCATGG 1 cut(s) 1725
NdeII GATC 4 cut(s) 254, 528, 586, 1235
NlaIII CATG 7 cut(s) 415, 935, 1070, 1402, 1439, 1729, 1874
NlaIV GGNNCC 2 cut(s) 1121, 1525
NmuCI GTSAC 3 cut(s) 468, 919, 1550
NspI RCATGY 2 cut(s) 415, 935
OliI CACNNNNGTG 1 cut(s) 1414
PcsI WCGNNNNNNNCGW 1 cut(s) 2125
PctI GAATGC 2 cut(s) 1808, 2111
PfeI GAWTC 3 cut(s) 1577, 1987, 2063
PflFI GACNNNGTC 1 cut(s) 452
PkrI GCNGC 2 cut(s) 244, 1282
PleI GAGTC 2 cut(s) 327, 1216
PpsI GAGTC 2 cut(s) 327, 1216
Ppu21I YACGTR 1 cut(s) 1096
PpuMI RGGWCCY 2 cut(s) 655, 1334
PsiI TTATAA 1 cut(s) 1215
Psp124BI GAGCTC 1 cut(s) 1324
Psp5II RGGWCCY 2 cut(s) 655, 1334
PspN4I GGNNCC 2 cut(s) 1121, 1525
PspOMI GGGCCC 1 cut(s) 1523
PspPI GGNCC 7 cut(s) 335, 655, 1334, 1377, 1523, 1524, 1896
PspPPI RGGWCCY 2 cut(s) 655, 1334
PstNI CAGNNNCTG 1 cut(s) 713
PsyI GACNNNGTC 1 cut(s) 452
RsaI GTAC 6 cut(s) 179, 800, 1044, 1121, 1709, 1778
RsaNI GTAC 6 cut(s) 178, 799, 1043, 1120, 1708, 1777
RseI CAYNNNNRTG 1 cut(s) 1414
SacI GAGCTC 1 cut(s) 1324
SalI GTCGAC 1 cut(s) 105
SaqAI TTAA 7 cut(s) 29, 401, 555, 645, 902, 1389, 1611
SatI GCNGC 2 cut(s) 243, 1281
Sau3AI GATC 4 cut(s) 254, 528, 586, 1235
Sau96I GGNCC 7 cut(s) 335, 655, 1334, 1377, 1523, 1524, 1896
ScaI AGTACT 2 cut(s) 179, 1709
SchI GAGTC 2 cut(s) 328, 1216
ScrFI CCNGG 1 cut(s) 1787
SduI GDGCHC 4 cut(s) 268, 508, 1324, 1527
SfaNI GCATC 5 cut(s) 439, 1480, 1504, 1683, 1695
SfcI CTRYAG 1 cut(s) 1900
SinI GGWCC 3 cut(s) 335, 655, 1334
SmiMI CAYNNNNRTG 1 cut(s) 1414
SmlI CTYRAG 4 cut(s) 246, 276, 316, 1139
SmoI CTYRAG 4 cut(s) 246, 276, 316, 1139
Sse9I AATT 1 cut(s) 810
SsiI CCGC 9 cut(s) 353, 584, 602, 734, 828, 1317, 1545, 1568, 1607
SspMI CTAG 6 cut(s) 194, 272, 434, 581, 854, 1565
SstI GAGCTC 1 cut(s) 1324
StyD4I CCNGG 1 cut(s) 1785
StyI CCWWGG 5 cut(s) 40, 214, 1284, 1725, 1974
TaaI ACNGT 3 cut(s) 66, 427, 1035
TaiI ACGT 2 cut(s) 1098, 2040
TaqI TCGA 8 cut(s) 106, 322, 681, 1231, 1242, 1497, 1915, 2119
TasI AATT 1 cut(s) 810
TatI WGTACW 3 cut(s) 177, 1707, 1776
TfiI GAWTC 3 cut(s) 1577, 1987, 2063
Tru1I TTAA 7 cut(s) 29, 401, 555, 645, 902, 1389, 1611
Tru9I TTAA 7 cut(s) 29, 401, 555, 645, 902, 1389, 1611
TscAI CASTG 3 cut(s) 432, 1473, 1688
TseFI GTSAC 3 cut(s) 468, 919, 1550
TseI GCWGC 2 cut(s) 242, 1280
Tsp45I GTSAC 3 cut(s) 468, 919, 1550
TspGWI ACGGA 1 cut(s) 1589
TspRI CASTG 3 cut(s) 432, 1473, 1688
Tth111I GACNNNGTC 1 cut(s) 452
VpaK11BI GGWCC 3 cut(s) 335, 655, 1334
XbaI TCTAGA 1 cut(s) 853
XceI RCATGY 2 cut(s) 415, 935
XcmI CCANNNNNNNNNTGG 1 cut(s) 1723
XmiI GTMKAC 2 cut(s) 106, 1638
XspI CTAG 6 cut(s) 194, 272, 434, 581, 854, 1565
ZrmI AGTACT 2 cut(s) 179, 1709
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.