Rw7G036430

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000160
Physical Location & Seq
Reverse (-)
55007381 .. 55021242
13862 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G036430.1

Sequence Viewer

Length: 2259 bp
ATGCCTTTTGGACTGAAGAATGCTGGAGCAACATATCAGAGAGCTATGAACCTGATCTTCCACGACATACTTGGGAAGATCTTAGAGGTTTACATTGATGACGTTGTCGTGAAGTCTAAGAAGAGTGGAGATCACTTCACCGATCTCAGAAAAGTTTTCAAGCGCATGCAGCTACACAAGCTCAAGATGAATCCCGCCAAGTGCGTTTTTGGAGTTCAGGCAGGAGATTTCCTGGGATTCATTGTCCATCAAAGAGGCATTGAGGTCCCTGAGGATAAAGCAAACGCGGTCATCAATGCATCTCCCCCGCGAACGAAGAAAGAGTTACAGCGACTACTGGGTAGGATCAACTTTTTGCGACGATTCATTTCTAACTCTTCAGGCAAAATCCATCCAGATTTAGAGGTCGCTGCCACAACTTTAGATCGCCCGGATTTAGCGTGCTTGCCAGAGTACGCCATGCTTTATCAAGACACAATCTCACTCCAGCCTTGGGTGTTATATTTTGACGGGTCAAGAACAGATACGCTAGCAGGAGCAGGGGTTGTCTTGGAAAACCCGGCCGGCGATCGATTTTCCTACTCTTTCCAGTTGGAGTTCCAGTGTACCAATAACCAAGCAGAATATGAGGCCCTCATTATAGGCCTAGAAGTACTACTGGAAATGGGAATCGGAGATGTACAAATACTTGGCGACTCTCTCTTGGTTATCAATCAGTTGTGCAACGAGTTCAGATGCAATAGCTTCACGTTGGTTCCTTATTGGAACAGGGCATTAGACCTGTTGGACCAGTTTGATAACATACATCTAGAGTACATTCCTCGCGAGCGAAATTTTGCAGCGAACGAGTTGGCCCAACTAGCAACAGGGGTAACATTGAGATATGGTGTGCGGGAGAGAATCCTTAAAGTCGAGCGTCGCACGCTTCCTTCATGGATGGCGAGAAGAGATCCTCCAGATGATACCTTAGTCGCGACCCTGGAACCCATTGACGTGGATTGGCGCATCCCTTTGATCGCTTATCTCAAGCAGCCAGATCCCATTGCCGACAGGAAGATTCGTTTTCTTGCACTAAATTACTTTCTTAGAGGTGACGAGCTGCGACGACGAGGCGAAGATGGCATAGACTTCAGATGTGTTTATGGCTGCGAAGCGAAACAACTCATGCGCGAAGTTCATTCCGGCATTTGCGGTGCTCACCAAGCAGGTCCAAAGATGCGATGGTTGCTCAGACGACATGGATATTTTTGGCCCAGTATCTTGAAGGATTGCATCGCATTCGCTAAAGGTTGTTTGGACTGCCAAGCTCATGGGCCGGTCCAGCATGTCCCTAATGTTCCAATGCAACCCATTATTAAGCCTTGGCCCGCAAGAGGATGGGCGCTTGATTTAATTGGGATGATTCACCCACATTCATCACTTCAGCACAAGTTCATCATCGTCGCGACCGATTTCTTTACAAAATGGGTCGAAGCAGAACCTTTGAAAGAAGCATCTGGTGGTACGTTGCGACAATTCCTATTTAGGAACATCATATGCAGATTTGGTATCCCAGAAGTTTTTGTTTCGGACCGGGGGGCAGCTTTCATGGGTGGTGAAGTTGATAAACTGGCAAAGGAATGGGGAATACAGTTCGTCCATTCCAGTCCTTATTATGCTCAGTCTAACGGTCAAGCGGAGGCCAGCAATAAAATCATCATCACTTTGCTGAAGAAAATGTTGGAAGCTAATCCGCGACAATGGCATGAGACCCTTTATGAGACTCTTTGGGCCTACCGCACATCGAAGCGAAATCCCACCGCGACTACACCTTATGCTTTGATGTTTGGCCATGACGCAGTCCTGCCTTTGGAAGTCAACGTCCAATCATTACGAGTCCAAGAGCAACATCATCTCATTGGAGAAGACTACGTTCAGGCTATGTGGCAGGAACATGAAGACCTTAGCGAAAAGCGCTTGGAGGCTTTAGATAATTTGGTCATGGAAAAGCAACGACTTGGAGGCTTTAGTATAATTTGGTCATGGAAAAGCAACGAGTACGCTCGAGCCTATGACAGCGAACAAGGGGAAGGAATTACAGCGAAGGAGAGTTGGTTTGGAAAGCAGTTCTCCCGCTTGGGCGAAAAATTAGATGGTCGCGGGCAAATGGACTCCAAGATGGAAGGCCCGTACATCATTTATAAAATCTTAGGGAAAGGAGCTTTATCTCATGGATGGAGATGGATGTCCATCATAACCCTATCAATGGGAGATACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

752

Amino Acids

85.88

Weight (kDa)

7.31

Isoelectric Point (pI)

35.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_1 PF00078 1 - 82 2.1e-14 Reverse transcriptase (RNA-dependent DNA polymerase)
RVT_3 PF13456 169 - 287 3.2e-20 Reverse transcriptase-like
Integrase_H2C2 PF17921 385 - 437 1e-07 Integrase zinc binding domain
rve PF00665 458 - 552 2.6e-09 Integrase core domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000160)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11612 FvH4_2g25851 FvH4_3g22802 FvH4_3g22805 FvH4_3g31361 FvH4_3g31382 FvH4_4g05272 FvH4_4g05273 FvH4_4g14567 FvH4_4g15161 FvH4_5g22540 FvH4_6g13113 FvH4_6g31923 FvH4_6g31924 FvH4_6g33651 FvH4_6g45122 FvH4_7g03662
pyrus_communis pycom01g04240 pycom01g24010 pycom02g18210 pycom02g19420 pycom05g06510 pycom09g15750 pycom09g18940 pycom12g02580 pycom12g03100 pycom12g08310 pycom13g22710 pycom13g28060 pycom16g18340 pycom16g18350 pycom16g24880 pycom16g26240 pycom461g00260 pycom520g00980 pycom520g01320
rosa_chinensis RchiOBHm_Chr1g0320731 RchiOBHm_Chr2g0102771 RchiOBHm_Chr3g0462151 RchiOBHm_Chr5g0038141 RchiOBHm_Chr5g0069371 RchiOBHm_Chr7g0239101
rosa_multiflora Rmu_co8038252.1_g000001 Rmu_co8138412.1_g000001 Rmu_co8331087.1_g000001 Rmu_co8479311.1_g000001 Rmu_sc0000112.1_g000018 Rmu_sc0000346.1_g000012 Rmu_sc0002102.1_g000002 Rmu_sc0003505.1_g000013 Rmu_sc0004249.1_g000007 Rmu_sc0004448.1_g000010 Rmu_sc0004594.1_g000011 Rmu_sc0004915.1_g000010 Rmu_sc0008019.1_g000019 Rmu_sc0008303.1_g000001 Rmu_sc0008355.1_g000005 Rmu_sc0009253.1_g000018 Rmu_sc0010211.1_g000002 Rmu_sc0010252.1_g000009 Rmu_sc0011534.1_g000008 Rmu_sc0014811.1_g000009 Rmu_sc0019475.1_g000001 Rmu_sc0024897.1_g000001 Rmu_sc0024898.1_g000001 Rmu_sc0031791.1_g000001 Rmu_sc0038715.1_g000001
rosa_roxburghii Rroxscaffold_165G00436940 Rroxscaffold_174G00435270 Rroxscaffold_177G00434330 Rroxscaffold_177G00434340 Rroxscaffold_177G00434350 Rroxscaffold_1G00002160 Rroxscaffold_1G00025260 Rroxscaffold_1G00042950 Rroxscaffold_1G00068010 Rroxscaffold_2G00107530 Rroxscaffold_3G00221190 Rroxscaffold_3G00221520 Rroxscaffold_3G00223200 Rroxscaffold_4G00322230 Rroxscaffold_4G00331810 Rroxscaffold_5G00385150 Rroxscaffold_5G00387510 Rroxscaffold_6G00410520 Rroxscaffold_6G00423360 Rroxscaffold_6G00423370 Rroxscaffold_6G00429210 Rroxscaffold_7G00158300 Rroxscaffold_7G00163480 Rroxscaffold_7G00171410 Rroxscaffold_7G00178940 Rroxscaffold_7G00199480 Rroxscaffold_7G00205630 Rroxscaffold_7G00207440
rosa_rugosa Rorug01G0056400 Rorug04G0063900 Rorug05G0251400 Rorug07G0221900
rosa_samantha Rh1DG169400 Rh2AG292900 Rh2DG519200 Rh4DG260600 Rh5AG042600 Rh6BG117500
rosa_wichuraiana Rw0G001900 Rw0G005150 Rw0G006380 Rw0G015140 Rw0G016320 Rw0G019440 Rw0G019840 Rw0G023740 Rw1G001590 Rw1G002180 Rw1G003560 Rw1G004280 Rw1G006110 Rw1G006680 Rw1G007920 Rw1G008480 Rw1G009120 Rw1G010310 Rw1G014900 Rw1G019650 Rw1G022070 Rw1G022170 Rw1G041570 Rw2G002740 Rw2G005760 Rw2G032370 Rw2G046770 Rw2G050600 Rw2G051420 Rw3G015930 Rw3G016280 Rw3G019580 Rw3G028420 Rw4G003430 Rw4G005350 Rw4G007530 Rw4G008150 Rw4G009580 Rw4G010250 Rw4G015800 Rw4G017000 Rw4G017910 Rw4G018510 Rw4G019700 Rw4G031010 Rw5G012650 Rw5G020140 Rw5G022060 Rw5G034420 Rw5G035560 Rw5G043010 Rw5G046750 Rw5G047340 Rw5G049500 Rw6G001390 Rw6G002210 Rw6G004530 Rw6G004770 Rw6G005100 Rw6G005890 Rw6G011860 Rw6G014680 Rw6G019480 Rw6G028970 Rw6G033800 Rw7G013050 Rw7G014800 Rw7G025760 Rw7G025850 Rw7G026730 Rw7G026870 Rw7G036330 Rw7G036430 Rw7G039320 Rw7G039510 Rw7G039560 Rw7G041370 Rw7G042050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2181
Acc36I ACCTGC 1 cut(s) 1196
AccII CGCG 9 cut(s) 287, 310, 825, 974, 1170, 1445, 1735, 1802, 2139
AclWI GGATC 3 cut(s) 353, 944, 1031
AcoI YGGCCR 2 cut(s) 561, 1828
AcsI RAATTY 1 cut(s) 832
AcuI CTGAAG 5 cut(s) 35, 363, 1114, 1406, 1730
AfaI GTAC 8 cut(s) 455, 607, 654, 681, 815, 1504, 2039, 2171
AfeI AGCGCT 1 cut(s) 1955
AfiI CCNNNNNNNGG 4 cut(s) 493, 1373, 1849, 2245
AgsI TTSAA 3 cut(s) 160, 1264, 1486
AjiI CACGTC 1 cut(s) 994
AjnI CCWGG 2 cut(s) 231, 978
AjuI GAANNNNNNNTTGG 2 cut(s) 1703, 1735
AluBI AGCT 9 cut(s) 44, 172, 181, 744, 1099, 1307, 1583, 1727, 2201
AluI AGCT 9 cut(s) 44, 172, 181, 744, 1099, 1307, 1583, 1727, 2201
Alw21I GWGCWC 1 cut(s) 1198
Alw26I GTCTC 2 cut(s) 1742, 1754
AlwI GGATC 3 cut(s) 353, 944, 1031
Ama87I CYCGRG 1 cut(s) 2043
Aor51HI AGCGCT 1 cut(s) 1955
ApeKI GCWGC 7 cut(s) 169, 410, 839, 1030, 1099, 1146, 1580
ApoI RAATTY 1 cut(s) 832
AspLEI GCGC 5 cut(s) 165, 1005, 1170, 1384, 1956
AsuC2I CCSGG 3 cut(s) 431, 560, 1574
AsuHPI GGTGA 5 cut(s) 130, 1103, 1190, 1397, 1607
AsuNHI GCTAGC 1 cut(s) 529
AvaI CYCGRG 1 cut(s) 2043
AvaII GGWCC 5 cut(s) 265, 787, 1208, 1318, 1570
AxyI CCTNAGG 1 cut(s) 270
BaeI ACNNNNGTAYC 2 cut(s) 954, 987
BalI TGGCCA 1 cut(s) 1830
BbsI GAAGAC 2 cut(s) 1911, 1944
Bbv12I GWGCWC 1 cut(s) 1198
BbvI GCAGC 7 cut(s) 181, 397, 851, 1042, 1086, 1133, 1592
BcgI CGANNNNNNTGC 2 cut(s) 1261, 1295
BciT130I CCWGG 2 cut(s) 233, 980
BciVI GTATCC 1 cut(s) 1559
BcnI CCSGG 3 cut(s) 431, 560, 1574
BcoDI GTCTC 2 cut(s) 1742, 1754
BfaI CTAG 4 cut(s) 530, 647, 809, 860
BfoI RGCGCY 2 cut(s) 1385, 1957
BfuAI ACCTGC 1 cut(s) 1196
BfuI GTATCC 1 cut(s) 1559
BglII AGATCT 1 cut(s) 78
BisI GCNGC 7 cut(s) 170, 411, 840, 1031, 1100, 1147, 1581
BlsI GCNGC 7 cut(s) 171, 412, 841, 1032, 1101, 1148, 1582
BmcAI AGTACT 1 cut(s) 654
Bme1390I CCNGG 5 cut(s) 233, 431, 560, 980, 1574
Bme18I GGWCC 5 cut(s) 265, 787, 1208, 1318, 1570
BmeT110I CYCGRG 1 cut(s) 2043
BmgBI CACGTC 1 cut(s) 994
BmiI GGNNCC 3 cut(s) 267, 756, 984
BmrFI CCNGG 5 cut(s) 233, 431, 560, 980, 1574
BmrI ACTGGG 2 cut(s) 347, 1248
BmsI GCATC 6 cut(s) 308, 725, 1014, 1206, 1281, 1502
BmtI GCTAGC 1 cut(s) 533
BmuI ACTGGG 2 cut(s) 347, 1248
BpiI GAAGAC 2 cut(s) 1911, 1944
BpmI CTGGAG 3 cut(s) 45, 470, 939
Bpu10I CCTNAGC 1 cut(s) 1943
BpuEI CTTGAG 2 cut(s) 167, 1010
BpuMI CCSGG 3 cut(s) 431, 560, 1574
Bsa29I ATCGAT 1 cut(s) 571
BsaBI GATNNNNATC 1 cut(s) 2228
BsaI GGTCTC 1 cut(s) 1742
BsaJI CCNNGG 5 cut(s) 232, 491, 978, 1361, 1573
BsaXI ACNNNNNCTCC 6 cut(s) 528, 558, 587, 617, 2078, 2108
Bsc4I CCNNNNNNNGG 4 cut(s) 493, 1373, 1849, 2245
Bse118I RCCGGY 2 cut(s) 563, 1315
Bse1I ACTGG 8 cut(s) 342, 589, 601, 663, 790, 1254, 1614, 1644
Bse21I CCTNAGG 1 cut(s) 270
Bse3DI GCAATG 1 cut(s) 1041
Bse8I GATNNNNATC 1 cut(s) 2228
BseBI CCWGG 2 cut(s) 233, 980
BseCI ATCGAT 1 cut(s) 571
BseDI CCNNGG 5 cut(s) 232, 491, 978, 1361, 1573
BseGI GGATG 7 cut(s) 391, 942, 1005, 1382, 1404, 2219, 2229
BseJI GATNNNNATC 1 cut(s) 2228
BseLI CCNNNNNNNGG 4 cut(s) 493, 1373, 1849, 2245
BseMI GCAATG 1 cut(s) 1041
BseMII CTCAG 4 cut(s) 160, 261, 1243, 1673
BseNI ACTGG 8 cut(s) 342, 589, 601, 663, 790, 1254, 1614, 1644
BseX3I CGGCCG 1 cut(s) 561
BseXI GCAGC 7 cut(s) 181, 397, 851, 1042, 1086, 1133, 1592
Bsh1236I CGCG 9 cut(s) 287, 310, 825, 974, 1170, 1445, 1735, 1802, 2139
Bsh1285I CGRYCG 3 cut(s) 564, 571, 1449
BshVI ATCGAT 1 cut(s) 571
BsiEI CGRYCG 3 cut(s) 564, 571, 1449
BsiHKAI GWGCWC 1 cut(s) 1198
BsiHKCI CYCGRG 1 cut(s) 2043
BsiSI CCGG 6 cut(s) 431, 560, 564, 1182, 1316, 1573
BslFI GGGAC 2 cut(s) 251, 1313
BslI CCNNNNNNNGG 4 cut(s) 493, 1373, 1849, 2245
BsmAI GTCTC 2 cut(s) 1742, 1754
BsmFI GGGAC 2 cut(s) 251, 1313
BsmI GAATGC 2 cut(s) 25, 1277
Bso31I GGTCTC 1 cut(s) 1742
BsoBI CYCGRG 1 cut(s) 2043
Bsp1286I GDGCHC 1 cut(s) 1198
Bsp1407I TGTACA 1 cut(s) 679
Bsp68I TCGCGA 3 cut(s) 825, 974, 1445
BspCNI CTCAG 4 cut(s) 159, 262, 1242, 1672
BspDI ATCGAT 1 cut(s) 571
BspFNI CGCG 9 cut(s) 287, 310, 825, 974, 1170, 1445, 1735, 1802, 2139
BspLI GGNNCC 3 cut(s) 267, 756, 984
BspMI ACCTGC 1 cut(s) 1196
BspOI GCTAGC 1 cut(s) 533
BspPI GGATC 3 cut(s) 353, 944, 1031
BspTNI GGTCTC 1 cut(s) 1742
BsrDI GCAATG 1 cut(s) 1041
BsrFI RCCGGY 2 cut(s) 563, 1315
BsrGI TGTACA 1 cut(s) 679
BsrI ACTGG 8 cut(s) 342, 589, 601, 663, 790, 1254, 1614, 1644
BssAI RCCGGY 2 cut(s) 563, 1315
BssECI CCNNGG 5 cut(s) 232, 491, 978, 1361, 1573
BssT1I CCWWGG 2 cut(s) 491, 1361
Bst2UI CCWGG 2 cut(s) 233, 980
Bst4CI ACNGT 2 cut(s) 1632, 1670
Bst6I CTCTTC 3 cut(s) 116, 382, 940
BstAUI TGTACA 1 cut(s) 679
BstF5I GGATG 7 cut(s) 391, 942, 1005, 1382, 1404, 2219, 2229
BstFNI CGCG 9 cut(s) 287, 310, 825, 974, 1170, 1445, 1735, 1802, 2139
BstH2I RGCGCY 2 cut(s) 1385, 1957
BstHHI GCGC 5 cut(s) 165, 1005, 1170, 1384, 1956
BstMAI GTCTC 2 cut(s) 1742, 1754
BstMCI CGRYCG 3 cut(s) 564, 571, 1449
BstNI CCWGG 2 cut(s) 233, 980
BstNSI RCATGY 2 cut(s) 169, 1328
BstSCI CCNGG 5 cut(s) 231, 429, 558, 978, 1572
BstUI CGCG 9 cut(s) 287, 310, 825, 974, 1170, 1445, 1735, 1802, 2139
BstV1I GCAGC 7 cut(s) 181, 397, 851, 1042, 1086, 1133, 1592
BstV2I GAAGAC 2 cut(s) 1911, 1944
BstX2I RGATCY 3 cut(s) 78, 949, 1036
BstXI CCANNNNNNTGG 2 cut(s) 994, 1310
BstYI RGATCY 3 cut(s) 78, 949, 1036
BstZI CGGCCG 1 cut(s) 561
Bsu15I ATCGAT 1 cut(s) 571
Bsu36I CCTNAGG 1 cut(s) 270
BsuI GTATCC 1 cut(s) 1559
BsuTUI ATCGAT 1 cut(s) 571
BtgZI GCGATG 2 cut(s) 1234, 1258
BtrI CACGTC 1 cut(s) 994
BtsCI GGATG 7 cut(s) 391, 942, 1005, 1382, 1404, 2219, 2229
BtsIMutI CAGTG 1 cut(s) 608
BtuMI TCGCGA 3 cut(s) 825, 974, 1445
BveI ACCTGC 1 cut(s) 1196
CfoI GCGC 5 cut(s) 165, 1005, 1170, 1384, 1956
Cfr10I RCCGGY 2 cut(s) 563, 1315
ClaI ATCGAT 1 cut(s) 571
CpoI CGGWCCG 1 cut(s) 1570
CseI GACGC 2 cut(s) 905, 1844
Csp6I GTAC 8 cut(s) 454, 606, 653, 680, 814, 1503, 2038, 2170
CspI CGGWCCG 1 cut(s) 1570
CviQI GTAC 8 cut(s) 454, 606, 653, 680, 814, 1503, 2038, 2170
EaeI YGGCCR 2 cut(s) 561, 1828
EagI CGGCCG 1 cut(s) 561
Eam1104I CTCTTC 3 cut(s) 116, 382, 940
EarI CTCTTC 3 cut(s) 116, 382, 940
EclXI CGGCCG 1 cut(s) 561
Eco130I CCWWGG 2 cut(s) 491, 1361
Eco147I AGGCCT 1 cut(s) 645
Eco31I GGTCTC 1 cut(s) 1742
Eco47I GGWCC 5 cut(s) 265, 787, 1208, 1318, 1570
Eco47III AGCGCT 1 cut(s) 1955
Eco52I CGGCCG 1 cut(s) 561
Eco57I CTGAAG 5 cut(s) 35, 363, 1114, 1406, 1730
Eco81I CCTNAGG 1 cut(s) 270
Eco88I CYCGRG 1 cut(s) 2043
EcoO109I RGGNCCY 2 cut(s) 265, 631
EcoRII CCWGG 2 cut(s) 231, 978
EcoT14I CCWWGG 2 cut(s) 491, 1361
EcoT22I ATGCAT 1 cut(s) 301
ErhI CCWWGG 2 cut(s) 491, 1361
FaqI GGGAC 2 cut(s) 251, 1313
FauI CCCGC 6 cut(s) 202, 315, 885, 1375, 2120, 2132
FauNDI CATATG 1 cut(s) 1535
Fnu4HI GCNGC 7 cut(s) 170, 411, 840, 1031, 1100, 1147, 1581
FokI GGATG 7 cut(s) 378, 949, 992, 1389, 1411, 2226, 2236
Fsp4HI GCNGC 7 cut(s) 170, 411, 840, 1031, 1100, 1147, 1581
FspBI CTAG 4 cut(s) 530, 647, 809, 860
GlaI GCGC 5 cut(s) 164, 1004, 1169, 1383, 1955
GluI GCNGC 7 cut(s) 170, 411, 840, 1031, 1100, 1147, 1581
GsuI CTGGAG 3 cut(s) 45, 470, 939
HaeII RGCGCY 2 cut(s) 1385, 1957
HapII CCGG 6 cut(s) 431, 560, 564, 1182, 1316, 1573
HgaI GACGC 2 cut(s) 905, 1844
HhaI GCGC 5 cut(s) 165, 1005, 1170, 1384, 1956
Hin6I GCGC 5 cut(s) 163, 1003, 1168, 1382, 1954
HinP1I GCGC 5 cut(s) 163, 1003, 1168, 1382, 1954
HincII GTYRAC 1 cut(s) 1858
HindII GTYRAC 1 cut(s) 1858
HpaII CCGG 6 cut(s) 431, 560, 564, 1182, 1316, 1573
HphI GGTGA 5 cut(s) 130, 1103, 1190, 1397, 1607
Hpy166II GTNNAC 3 cut(s) 91, 606, 1858
Hpy188I TCNGA 7 cut(s) 39, 149, 674, 734, 1133, 1232, 1570
Hpy8I GTNNAC 3 cut(s) 91, 606, 1858
Hpy99I CGWCG 5 cut(s) 363, 921, 1107, 1110, 1445
HpyAV CCTTC 5 cut(s) 939, 1258, 2063, 2077, 2156
HpyCH4III ACNGT 2 cut(s) 1632, 1670
HpyCH4IV ACGT 6 cut(s) 102, 749, 993, 1505, 1860, 1911
HpyCH4V TGCA 9 cut(s) 169, 299, 723, 738, 839, 1070, 1272, 1345, 1539
HpySE526I ACGT 6 cut(s) 102, 749, 993, 1505, 1860, 1911
HspAI GCGC 5 cut(s) 163, 1003, 1168, 1382, 1954
KroI GCCGGC 1 cut(s) 563
KroNI GCCGGC 1 cut(s) 565
LmnI GCTCC 3 cut(s) 26, 536, 2198
Lsp1109I GCAGC 7 cut(s) 181, 397, 851, 1042, 1086, 1133, 1592
LweI GCATC 6 cut(s) 308, 725, 1014, 1206, 1281, 1502
MaeI CTAG 4 cut(s) 530, 647, 809, 860
MaeII ACGT 6 cut(s) 102, 749, 993, 1505, 1860, 1911
MaeIII GTNAC 3 cut(s) 324, 871, 1091
MflI RGATCY 3 cut(s) 78, 949, 1036
MhlI GDGCHC 1 cut(s) 1198
MlsI TGGCCA 1 cut(s) 1830
MluCI AATT 8 cut(s) 832, 1075, 1392, 1514, 1972, 2013, 2073, 2126
MluNI TGGCCA 1 cut(s) 1830
MlyI GAGTC 4 cut(s) 689, 1756, 1884, 2144
MmeI TCCRAC 3 cut(s) 573, 765, 1701
Mox20I TGGCCA 1 cut(s) 1830
Mph1103I ATGCAT 1 cut(s) 301
MroNI GCCGGC 1 cut(s) 563
MscI TGGCCA 1 cut(s) 1830
MseI TTAA 3 cut(s) 906, 1356, 1391
MslI CAYNNNNRTG 1 cut(s) 992
Msp20I TGGCCA 1 cut(s) 1830
MspI CCGG 6 cut(s) 431, 560, 564, 1182, 1316, 1573
MspR9I CCNGG 5 cut(s) 233, 431, 560, 980, 1574
Mva1269I GAATGC 2 cut(s) 25, 1277
MvaI CCWGG 2 cut(s) 233, 980
MvnI CGCG 9 cut(s) 287, 310, 825, 974, 1170, 1445, 1735, 1802, 2139
NaeI GCCGGC 1 cut(s) 565
NciI CCSGG 3 cut(s) 431, 560, 1574
NdeI CATATG 1 cut(s) 1535
NgoMIV GCCGGC 1 cut(s) 563
NheI GCTAGC 1 cut(s) 529
NlaIV GGNNCC 3 cut(s) 267, 756, 984
NmuCI GTSAC 1 cut(s) 1091
NruI TCGCGA 3 cut(s) 825, 974, 1445
NsiI ATGCAT 1 cut(s) 301
NspI RCATGY 2 cut(s) 169, 1328
PaeI GCATGC 1 cut(s) 169
PaeR7I CTCGAG 1 cut(s) 2043
PceI AGGCCT 1 cut(s) 645
PcsI WCGNNNNNNNCGW 1 cut(s) 1446
PctI GAATGC 2 cut(s) 25, 1277
PdiI GCCGGC 1 cut(s) 565
PfeI GAWTC 7 cut(s) 190, 237, 363, 669, 900, 1057, 1402
PflFI GACNNNGTC 2 cut(s) 104, 1838
PkrI GCNGC 7 cut(s) 171, 412, 841, 1032, 1101, 1148, 1582
Ple19I CGATCG 1 cut(s) 571
PleI GAGTC 4 cut(s) 689, 1756, 1883, 2144
PpsI GAGTC 4 cut(s) 689, 1756, 1883, 2144
PpuMI RGGWCCY 1 cut(s) 265
PsiI TTATAA 1 cut(s) 2181
Psp5II RGGWCCY 1 cut(s) 265
Psp6I CCWGG 2 cut(s) 231, 978
PspGI CCWGG 2 cut(s) 231, 978
PspN4I GGNNCC 3 cut(s) 267, 756, 984
PspPPI RGGWCCY 1 cut(s) 265
PspXI VCTCGAGB 1 cut(s) 2043
PsuI RGATCY 3 cut(s) 78, 949, 1036
PsyI GACNNNGTC 2 cut(s) 104, 1838
PvuI CGATCG 1 cut(s) 571
RruI TCGCGA 3 cut(s) 825, 974, 1445
RsaI GTAC 8 cut(s) 455, 607, 654, 681, 815, 1504, 2039, 2171
RsaNI GTAC 8 cut(s) 454, 606, 653, 680, 814, 1503, 2038, 2170
RseI CAYNNNNRTG 1 cut(s) 992
Rsr2I CGGWCCG 1 cut(s) 1570
RsrII CGGWCCG 1 cut(s) 1570
SaqAI TTAA 3 cut(s) 906, 1356, 1391
SatI GCNGC 7 cut(s) 170, 411, 840, 1031, 1100, 1147, 1581
ScaI AGTACT 1 cut(s) 654
SchI GAGTC 4 cut(s) 689, 1756, 1884, 2144
ScrFI CCNGG 5 cut(s) 233, 431, 560, 980, 1574
SduI GDGCHC 1 cut(s) 1198
SfaNI GCATC 6 cut(s) 308, 725, 1014, 1206, 1281, 1502
Sfr274I CTCGAG 1 cut(s) 2043
SinI GGWCC 5 cut(s) 265, 787, 1208, 1318, 1570
SlaI CTCGAG 1 cut(s) 2043
SmiMI CAYNNNNRTG 1 cut(s) 992
SmlI CTYRAG 3 cut(s) 182, 1025, 2043
SmoI CTYRAG 3 cut(s) 182, 1025, 2043
SphI GCATGC 1 cut(s) 169
Sse9I AATT 8 cut(s) 832, 1075, 1392, 1514, 1972, 2013, 2073, 2126
SseBI AGGCCT 1 cut(s) 645
SspMI CTAG 4 cut(s) 530, 647, 809, 860
StuI AGGCCT 1 cut(s) 645
StyD4I CCNGG 5 cut(s) 231, 429, 558, 978, 1572
StyI CCWWGG 2 cut(s) 491, 1361
TaaI ACNGT 2 cut(s) 1632, 1670
TaiI ACGT 6 cut(s) 105, 752, 996, 1508, 1863, 1914
TaqI TCGA 5 cut(s) 571, 912, 1470, 1784, 2044
TaqII GACCGA 1 cut(s) 1463
TasI AATT 8 cut(s) 832, 1075, 1392, 1514, 1972, 2013, 2073, 2126
TatI WGTACW 3 cut(s) 652, 679, 813
TfiI GAWTC 7 cut(s) 190, 237, 363, 669, 900, 1057, 1402
Tru1I TTAA 3 cut(s) 906, 1356, 1391
Tru9I TTAA 3 cut(s) 906, 1356, 1391
TscAI CASTG 1 cut(s) 608
TseFI GTSAC 1 cut(s) 1091
TseI GCWGC 7 cut(s) 169, 410, 839, 1030, 1099, 1146, 1580
Tsp45I GTSAC 1 cut(s) 1091
TspRI CASTG 1 cut(s) 608
Tth111I GACNNNGTC 2 cut(s) 104, 1838
VpaK11BI GGWCC 5 cut(s) 265, 787, 1208, 1318, 1570
XapI RAATTY 1 cut(s) 832
XbaI TCTAGA 1 cut(s) 808
XceI RCATGY 2 cut(s) 169, 1328
XcmI CCANNNNNNNNNTGG 2 cut(s) 68, 1218
XhoI CTCGAG 1 cut(s) 2043
XspI CTAG 4 cut(s) 530, 647, 809, 860
ZrmI AGTACT 1 cut(s) 654
Zsp2I ATGCAT 1 cut(s) 301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.