Rroxscaffold_3G00221520

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000160
Physical Location & Seq
Forward (+)
4287573 .. 4290498
2926 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00221520.1

Sequence Viewer

Length: 525 bp
ATGTCGTTACTACAAGAACCATGCAGTTGCTTGGAATTAAGAAAGAGAAGATCCGCCTACCTCTCTCACCCCGAAGAACTTCGCGGGACCGTAACGAAGACATTGGGCTTCTGTTCCTACGTATCAAGGTTGGCCCCGTATAAGGGGTTTATGCCTTCTTTGTTACAGATTGTTATGCGGCCTACGCGCTATCCTAGGCCGGGATTGGATCCAAAAGAGCTATTGCGTTCCCGCAACTTTGCTGCAAACGAACCGGCTCAATGGCTACGGCATTACCCGAAGTATGGGGTTCATGAGTATATTCGAAAGTTGAGCGGCACAAGCTTCTTTCATGGCTCGAGCGGCCACGATCCACCGGATGAACCACTAGTTGCAATCTTAGAGCCTATAGACATGGATTGGCGTATCCCCCGATCGATTACCTCGAGCGACCGGATGCATATACGGATAGGAAGATCCGCTTTCTTGCACCGAATTACTTTCTCGGAGGTGACAAATTGCGACGACGTGGCGAAGATGGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

174

Amino Acids

20.02

Weight (kDa)

9.44

Isoelectric Point (pI)

69.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000160)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11612 FvH4_2g25851 FvH4_3g22802 FvH4_3g22805 FvH4_3g31361 FvH4_3g31382 FvH4_4g05272 FvH4_4g05273 FvH4_4g14567 FvH4_4g15161 FvH4_5g22540 FvH4_6g13113 FvH4_6g31923 FvH4_6g31924 FvH4_6g33651 FvH4_6g45122 FvH4_7g03662
pyrus_communis pycom01g04240 pycom01g24010 pycom02g18210 pycom02g19420 pycom05g06510 pycom09g15750 pycom09g18940 pycom12g02580 pycom12g03100 pycom12g08310 pycom13g22710 pycom13g28060 pycom16g18340 pycom16g18350 pycom16g24880 pycom16g26240 pycom461g00260 pycom520g00980 pycom520g01320
rosa_chinensis RchiOBHm_Chr1g0320731 RchiOBHm_Chr2g0102771 RchiOBHm_Chr3g0462151 RchiOBHm_Chr5g0038141 RchiOBHm_Chr5g0069371 RchiOBHm_Chr7g0239101
rosa_multiflora Rmu_co8038252.1_g000001 Rmu_co8138412.1_g000001 Rmu_co8331087.1_g000001 Rmu_co8479311.1_g000001 Rmu_sc0000112.1_g000018 Rmu_sc0000346.1_g000012 Rmu_sc0002102.1_g000002 Rmu_sc0003505.1_g000013 Rmu_sc0004249.1_g000007 Rmu_sc0004448.1_g000010 Rmu_sc0004594.1_g000011 Rmu_sc0004915.1_g000010 Rmu_sc0008019.1_g000019 Rmu_sc0008303.1_g000001 Rmu_sc0008355.1_g000005 Rmu_sc0009253.1_g000018 Rmu_sc0010211.1_g000002 Rmu_sc0010252.1_g000009 Rmu_sc0011534.1_g000008 Rmu_sc0014811.1_g000009 Rmu_sc0019475.1_g000001 Rmu_sc0024897.1_g000001 Rmu_sc0024898.1_g000001 Rmu_sc0031791.1_g000001 Rmu_sc0038715.1_g000001
rosa_roxburghii Rroxscaffold_165G00436940 Rroxscaffold_174G00435270 Rroxscaffold_177G00434330 Rroxscaffold_177G00434340 Rroxscaffold_177G00434350 Rroxscaffold_1G00002160 Rroxscaffold_1G00025260 Rroxscaffold_1G00042950 Rroxscaffold_1G00068010 Rroxscaffold_2G00107530 Rroxscaffold_3G00221190 Rroxscaffold_3G00221520 Rroxscaffold_3G00223200 Rroxscaffold_4G00322230 Rroxscaffold_4G00331810 Rroxscaffold_5G00385150 Rroxscaffold_5G00387510 Rroxscaffold_6G00410520 Rroxscaffold_6G00423360 Rroxscaffold_6G00423370 Rroxscaffold_6G00429210 Rroxscaffold_7G00158300 Rroxscaffold_7G00163480 Rroxscaffold_7G00171410 Rroxscaffold_7G00178940 Rroxscaffold_7G00199480 Rroxscaffold_7G00205630 Rroxscaffold_7G00207440
rosa_rugosa Rorug01G0056400 Rorug04G0063900 Rorug05G0251400 Rorug07G0221900
rosa_samantha Rh1DG169400 Rh2AG292900 Rh2DG519200 Rh4DG260600 Rh5AG042600 Rh6BG117500
rosa_wichuraiana Rw0G001900 Rw0G005150 Rw0G006380 Rw0G015140 Rw0G016320 Rw0G019440 Rw0G019840 Rw0G023740 Rw1G001590 Rw1G002180 Rw1G003560 Rw1G004280 Rw1G006110 Rw1G006680 Rw1G007920 Rw1G008480 Rw1G009120 Rw1G010310 Rw1G014900 Rw1G019650 Rw1G022070 Rw1G022170 Rw1G041570 Rw2G002740 Rw2G005760 Rw2G032370 Rw2G046770 Rw2G050600 Rw2G051420 Rw3G015930 Rw3G016280 Rw3G019580 Rw3G028420 Rw4G003430 Rw4G005350 Rw4G007530 Rw4G008150 Rw4G009580 Rw4G010250 Rw4G015800 Rw4G017000 Rw4G017910 Rw4G018510 Rw4G019700 Rw4G031010 Rw5G012650 Rw5G020140 Rw5G022060 Rw5G034420 Rw5G035560 Rw5G043010 Rw5G046750 Rw5G047340 Rw5G049500 Rw6G001390 Rw6G002210 Rw6G004530 Rw6G004770 Rw6G005100 Rw6G005890 Rw6G011860 Rw6G014680 Rw6G019480 Rw6G028970 Rw6G033800 Rw7G013050 Rw7G014800 Rw7G025760 Rw7G025850 Rw7G026730 Rw7G026870 Rw7G036330 Rw7G036430 Rw7G039320 Rw7G039510 Rw7G039560 Rw7G041370 Rw7G042050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 315, 342
AccII CGCG 2 cut(s) 84, 187
AciI CCGC 7 cut(s) 54, 84, 178, 232, 315, 342, 459
AclWI GGATC 5 cut(s) 45, 203, 216, 344, 450
AcoI YGGCCR 1 cut(s) 343
AfiI CCNNNNNNNGG 4 cut(s) 142, 143, 200, 284
AhlI ACTAGT 1 cut(s) 367
AjiI CACGTC 1 cut(s) 508
AluBI AGCT 2 cut(s) 220, 324
AluI AGCT 2 cut(s) 220, 324
AlwI GGATC 5 cut(s) 45, 203, 216, 344, 450
Ama87I CYCGRG 2 cut(s) 337, 424
AoxI GGCC 4 cut(s) 132, 179, 197, 343
ApeKI GCWGC 1 cut(s) 242
Asp700I GAANNNNTTC 1 cut(s) 78
AspA2I CCTAGG 1 cut(s) 194
AspLEI GCGC 1 cut(s) 189
AspS9I GGNCC 2 cut(s) 87, 133
AsuC2I CCSGG 1 cut(s) 201
AsuHPI GGTGA 2 cut(s) 59, 502
AsuII TTCGAA 1 cut(s) 304
AvaI CYCGRG 2 cut(s) 337, 424
AvaII GGWCC 1 cut(s) 87
AvrII CCTAGG 1 cut(s) 194
BamHI GGATCC 1 cut(s) 208
BbsI GAAGAC 1 cut(s) 104
BbvI GCAGC 1 cut(s) 229
BccI CCATC 1 cut(s) 511
BceAI ACGGC 1 cut(s) 284
BciVI GTATCC 1 cut(s) 416
BcnI CCSGG 1 cut(s) 201
BcuI ACTAGT 1 cut(s) 367
BfaI CTAG 2 cut(s) 195, 368
BfmI CTRYAG 1 cut(s) 387
BfuI GTATCC 1 cut(s) 416
BisI GCNGC 4 cut(s) 179, 243, 316, 343
BlnI CCTAGG 1 cut(s) 194
BlsI GCNGC 4 cut(s) 180, 244, 317, 344
Bme1390I CCNGG 1 cut(s) 201
Bme18I GGWCC 1 cut(s) 87
BmeT110I CYCGRG 2 cut(s) 337, 424
BmgBI CACGTC 1 cut(s) 508
BmgT120I GGNCC 2 cut(s) 87, 133
BmiI GGNNCC 3 cut(s) 88, 135, 210
BmrFI CCNGG 1 cut(s) 201
BmsI GCATC 1 cut(s) 426
BpiI GAAGAC 1 cut(s) 104
Bpu14I TTCGAA 1 cut(s) 304
BpuMI CCSGG 1 cut(s) 201
Bsa29I ATCGAT 1 cut(s) 416
BsaAI YACGTR 1 cut(s) 121
BsaJI CCNNGG 1 cut(s) 194
BsaWI WCCGGW 2 cut(s) 355, 432
Bsc4I CCNNNNNNNGG 4 cut(s) 142, 143, 200, 284
Bse118I RCCGGY 1 cut(s) 253
BseCI ATCGAT 1 cut(s) 416
BseDI CCNNGG 1 cut(s) 194
BseGI GGATG 2 cut(s) 364, 441
BseLI CCNNNNNNNGG 4 cut(s) 142, 143, 200, 284
BseXI GCAGC 1 cut(s) 229
Bsh1236I CGCG 2 cut(s) 84, 187
Bsh1285I CGRYCG 2 cut(s) 416, 433
BshFI GGCC 4 cut(s) 134, 181, 199, 345
BshVI ATCGAT 1 cut(s) 416
BsiEI CGRYCG 2 cut(s) 416, 433
BsiHKCI CYCGRG 2 cut(s) 337, 424
BsiSI CCGG 4 cut(s) 200, 254, 356, 433
BslFI GGGAC 1 cut(s) 100
BslI CCNNNNNNNGG 4 cut(s) 142, 143, 200, 284
BsmFI GGGAC 1 cut(s) 100
BsnI GGCC 4 cut(s) 134, 181, 199, 345
BsoBI CYCGRG 2 cut(s) 337, 424
Bsp119I TTCGAA 1 cut(s) 304
Bsp143I GATC 5 cut(s) 50, 208, 349, 413, 455
BspACI CCGC 7 cut(s) 54, 84, 178, 232, 315, 342, 459
BspANI GGCC 4 cut(s) 134, 181, 199, 345
BspDI ATCGAT 1 cut(s) 416
BspFNI CGCG 2 cut(s) 84, 187
BspHI TCATGA 1 cut(s) 292
BspLI GGNNCC 3 cut(s) 88, 135, 210
BspPI GGATC 5 cut(s) 45, 203, 216, 344, 450
BspT104I TTCGAA 1 cut(s) 304
BsrBI CCGCTC 2 cut(s) 315, 342
BsrFI RCCGGY 1 cut(s) 253
BssAI RCCGGY 1 cut(s) 253
BssECI CCNNGG 1 cut(s) 194
BssMI GATC 5 cut(s) 50, 208, 349, 413, 455
BssT1I CCWWGG 1 cut(s) 194
Bst4CI ACNGT 1 cut(s) 91
BstBAI YACGTR 1 cut(s) 121
BstBI TTCGAA 1 cut(s) 304
BstDEI CTNAG 1 cut(s) 379
BstF5I GGATG 2 cut(s) 364, 441
BstFNI CGCG 2 cut(s) 84, 187
BstHHI GCGC 1 cut(s) 189
BstKTI GATC 5 cut(s) 53, 211, 352, 416, 458
BstMBI GATC 5 cut(s) 50, 208, 349, 413, 455
BstMCI CGRYCG 2 cut(s) 416, 433
BstMWI GCNNNNNNNGC 4 cut(s) 184, 321, 342, 518
BstSCI CCNGG 1 cut(s) 199
BstSFI CTRYAG 1 cut(s) 387
BstSNI TACGTA 1 cut(s) 121
BstUI CGCG 2 cut(s) 84, 187
BstV1I GCAGC 1 cut(s) 229
BstV2I GAAGAC 1 cut(s) 104
BstX2I RGATCY 3 cut(s) 50, 208, 455
BstYI RGATCY 3 cut(s) 50, 208, 455
Bsu15I ATCGAT 1 cut(s) 416
BsuI GTATCC 1 cut(s) 416
BsuRI GGCC 4 cut(s) 134, 181, 199, 345
BsuTUI ATCGAT 1 cut(s) 416
BtrI CACGTC 1 cut(s) 508
BtsCI GGATG 2 cut(s) 364, 441
CciI TCATGA 1 cut(s) 292
CfoI GCGC 1 cut(s) 189
Cfr10I RCCGGY 1 cut(s) 253
Cfr13I GGNCC 2 cut(s) 87, 133
ClaI ATCGAT 1 cut(s) 416
CviAII CATG 4 cut(s) 21, 293, 332, 394
DdeI CTNAG 1 cut(s) 379
DpnI GATC 5 cut(s) 52, 210, 351, 415, 457
DpnII GATC 5 cut(s) 50, 208, 349, 413, 455
EaeI YGGCCR 1 cut(s) 343
EciI GGCGGA 1 cut(s) 43
Eco105I TACGTA 1 cut(s) 121
Eco130I CCWWGG 1 cut(s) 194
Eco47I GGWCC 1 cut(s) 87
Eco88I CYCGRG 2 cut(s) 337, 424
EcoT14I CCWWGG 1 cut(s) 194
EcoT22I ATGCAT 1 cut(s) 441
ErhI CCWWGG 1 cut(s) 194
FaeI CATG 4 cut(s) 24, 296, 335, 397
FalI AAGNNNNNCTT 2 cut(s) 445, 477
FaqI GGGAC 1 cut(s) 100
FatI CATG 4 cut(s) 20, 292, 331, 393
FauI CCCGC 2 cut(s) 77, 239
Fnu4HI GCNGC 4 cut(s) 179, 243, 316, 343
FokI GGATG 2 cut(s) 371, 448
Fsp4HI GCNGC 4 cut(s) 179, 243, 316, 343
FspBI CTAG 2 cut(s) 195, 368
GlaI GCGC 1 cut(s) 188
GluI GCNGC 4 cut(s) 179, 243, 316, 343
HaeIII GGCC 4 cut(s) 134, 181, 199, 345
HapII CCGG 4 cut(s) 200, 254, 356, 433
HhaI GCGC 1 cut(s) 189
Hin1II CATG 4 cut(s) 24, 296, 335, 397
Hin6I GCGC 1 cut(s) 187
HinP1I GCGC 1 cut(s) 187
HindIII AAGCTT 1 cut(s) 322
HpaII CCGG 4 cut(s) 200, 254, 356, 433
HphI GGTGA 2 cut(s) 59, 502
Hpy188I TCNGA 1 cut(s) 487
Hpy188III TCNNGA 1 cut(s) 293
Hpy99I CGWCG 2 cut(s) 506, 509
HpyAV CCTTC 1 cut(s) 165
HpyCH4III ACNGT 1 cut(s) 91
HpyCH4IV ACGT 2 cut(s) 120, 507
HpyCH4V TGCA 5 cut(s) 24, 245, 374, 439, 469
HpyF10VI GCNNNNNNNGC 4 cut(s) 184, 321, 342, 518
HpyF3I CTNAG 1 cut(s) 379
HpySE526I ACGT 2 cut(s) 120, 507
Hsp92II CATG 4 cut(s) 24, 296, 335, 397
HspAI GCGC 1 cut(s) 187
Kzo9I GATC 5 cut(s) 50, 208, 349, 413, 455
LpnPI CCDG 4 cut(s) 213, 267, 369, 446
Lsp1109I GCAGC 1 cut(s) 229
LweI GCATC 1 cut(s) 426
MaeI CTAG 2 cut(s) 195, 368
MaeII ACGT 2 cut(s) 120, 507
MaeIII GTNAC 4 cut(s) 6, 91, 162, 490
MalI GATC 5 cut(s) 52, 210, 351, 415, 457
MbiI CCGCTC 2 cut(s) 315, 342
MboI GATC 5 cut(s) 50, 208, 349, 413, 455
MboII GAAGA 4 cut(s) 60, 86, 109, 465
MflI RGATCY 3 cut(s) 50, 208, 455
MluCI AATT 3 cut(s) 35, 474, 496
MnlI CCTC 3 cut(s) 71, 433, 481
Mph1103I ATGCAT 1 cut(s) 441
MroXI GAANNNNTTC 1 cut(s) 78
MseI TTAA 1 cut(s) 38
MspI CCGG 4 cut(s) 200, 254, 356, 433
MspR9I CCNGG 1 cut(s) 201
MvnI CGCG 2 cut(s) 84, 187
MwoI GCNNNNNNNGC 4 cut(s) 184, 321, 342, 518
NciI CCSGG 1 cut(s) 201
NdeII GATC 5 cut(s) 50, 208, 349, 413, 455
NlaIII CATG 4 cut(s) 24, 296, 335, 397
NlaIV GGNNCC 3 cut(s) 88, 135, 210
NmuCI GTSAC 1 cut(s) 490
NsiI ATGCAT 1 cut(s) 441
NspV TTCGAA 1 cut(s) 304
PaeR7I CTCGAG 2 cut(s) 337, 424
PagI TCATGA 1 cut(s) 292
PcsI WCGNNNNNNNCGW 1 cut(s) 422
PdmI GAANNNNTTC 1 cut(s) 78
PkrI GCNGC 4 cut(s) 180, 244, 317, 344
Ple19I CGATCG 1 cut(s) 416
Ppu21I YACGTR 1 cut(s) 121
PspN4I GGNNCC 3 cut(s) 88, 135, 210
PspPI GGNCC 2 cut(s) 87, 133
PspXI VCTCGAGB 2 cut(s) 337, 424
PsuI RGATCY 3 cut(s) 50, 208, 455
PvuI CGATCG 1 cut(s) 416
SaqAI TTAA 1 cut(s) 38
SatI GCNGC 4 cut(s) 179, 243, 316, 343
Sau3AI GATC 5 cut(s) 50, 208, 349, 413, 455
Sau96I GGNCC 2 cut(s) 87, 133
ScrFI CCNGG 1 cut(s) 201
SetI ASST 8 cut(s) 63, 123, 131, 222, 326, 425, 492, 510
SfaNI GCATC 1 cut(s) 426
SfcI CTRYAG 1 cut(s) 387
Sfr274I CTCGAG 2 cut(s) 337, 424
SfuI TTCGAA 1 cut(s) 304
SinI GGWCC 1 cut(s) 87
SlaI CTCGAG 2 cut(s) 337, 424
SmlI CTYRAG 2 cut(s) 337, 424
SmoI CTYRAG 2 cut(s) 337, 424
SnaBI TACGTA 1 cut(s) 121
SpeI ACTAGT 1 cut(s) 367
Sse9I AATT 3 cut(s) 35, 474, 496
SsiI CCGC 7 cut(s) 54, 84, 178, 232, 315, 342, 459
SspMI CTAG 2 cut(s) 195, 368
StyD4I CCNGG 1 cut(s) 199
StyI CCWWGG 1 cut(s) 194
TaaI ACNGT 1 cut(s) 91
TaiI ACGT 2 cut(s) 123, 510
TaqI TCGA 4 cut(s) 304, 338, 416, 425
TasI AATT 3 cut(s) 35, 474, 496
TauI GCSGC 3 cut(s) 181, 318, 345
Tru1I TTAA 1 cut(s) 38
Tru9I TTAA 1 cut(s) 38
TseFI GTSAC 1 cut(s) 490
TseI GCWGC 1 cut(s) 242
Tsp45I GTSAC 1 cut(s) 490
TspDTI ATGAA 3 cut(s) 281, 320, 375
TspGWI ACGGA 1 cut(s) 460
VpaK11BI GGWCC 1 cut(s) 87
XhoI CTCGAG 2 cut(s) 337, 424
XmaJI CCTAGG 1 cut(s) 194
XmnI GAANNNNTTC 1 cut(s) 78
XspI CTAG 2 cut(s) 195, 368
Zsp2I ATGCAT 1 cut(s) 441
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.