Rmu_sc0024898.1_g000001

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0024898.1
OG0000160
Physical Location & Seq
Forward (+)
326 .. 625
300 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0024898.1_g000001.1.cds

Sequence Viewer

Length: 300 bp
atgtgtaagctggttacttgtccatattttaatcgcgcaattgagtttctggatcaattcaatgacgccgatttggaatacatccctcgcgagctcaatttcgcaaccaatgagctcgctcaactggccacaggcattacattgaaatatggggttcgcgagcgtattctgaaagtcgagcatcgcacactaccttcatggctcgcacggcctgatccgcccgacgatctagtggtcgcggtgctagaacctattgatgtggattggcgcatcccgctgatcgattacctcaagcagcca
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

100

Amino Acids

11.64

Weight (kDa)

4.73

Isoelectric Point (pI)

15.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000160)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11612 FvH4_2g25851 FvH4_3g22802 FvH4_3g22805 FvH4_3g31361 FvH4_3g31382 FvH4_4g05272 FvH4_4g05273 FvH4_4g14567 FvH4_4g15161 FvH4_5g22540 FvH4_6g13113 FvH4_6g31923 FvH4_6g31924 FvH4_6g33651 FvH4_6g45122 FvH4_7g03662
pyrus_communis pycom01g04240 pycom01g24010 pycom02g18210 pycom02g19420 pycom05g06510 pycom09g15750 pycom09g18940 pycom12g02580 pycom12g03100 pycom12g08310 pycom13g22710 pycom13g28060 pycom16g18340 pycom16g18350 pycom16g24880 pycom16g26240 pycom461g00260 pycom520g00980 pycom520g01320
rosa_chinensis RchiOBHm_Chr1g0320731 RchiOBHm_Chr2g0102771 RchiOBHm_Chr3g0462151 RchiOBHm_Chr5g0038141 RchiOBHm_Chr5g0069371 RchiOBHm_Chr7g0239101
rosa_multiflora Rmu_co8038252.1_g000001 Rmu_co8138412.1_g000001 Rmu_co8331087.1_g000001 Rmu_co8479311.1_g000001 Rmu_sc0000112.1_g000018 Rmu_sc0000346.1_g000012 Rmu_sc0002102.1_g000002 Rmu_sc0003505.1_g000013 Rmu_sc0004249.1_g000007 Rmu_sc0004448.1_g000010 Rmu_sc0004594.1_g000011 Rmu_sc0004915.1_g000010 Rmu_sc0008019.1_g000019 Rmu_sc0008303.1_g000001 Rmu_sc0008355.1_g000005 Rmu_sc0009253.1_g000018 Rmu_sc0010211.1_g000002 Rmu_sc0010252.1_g000009 Rmu_sc0011534.1_g000008 Rmu_sc0014811.1_g000009 Rmu_sc0019475.1_g000001 Rmu_sc0024897.1_g000001 Rmu_sc0024898.1_g000001 Rmu_sc0031791.1_g000001 Rmu_sc0038715.1_g000001
rosa_roxburghii Rroxscaffold_165G00436940 Rroxscaffold_174G00435270 Rroxscaffold_177G00434330 Rroxscaffold_177G00434340 Rroxscaffold_177G00434350 Rroxscaffold_1G00002160 Rroxscaffold_1G00025260 Rroxscaffold_1G00042950 Rroxscaffold_1G00068010 Rroxscaffold_2G00107530 Rroxscaffold_3G00221190 Rroxscaffold_3G00221520 Rroxscaffold_3G00223200 Rroxscaffold_4G00322230 Rroxscaffold_4G00331810 Rroxscaffold_5G00385150 Rroxscaffold_5G00387510 Rroxscaffold_6G00410520 Rroxscaffold_6G00423360 Rroxscaffold_6G00423370 Rroxscaffold_6G00429210 Rroxscaffold_7G00158300 Rroxscaffold_7G00163480 Rroxscaffold_7G00171410 Rroxscaffold_7G00178940 Rroxscaffold_7G00199480 Rroxscaffold_7G00205630 Rroxscaffold_7G00207440
rosa_rugosa Rorug01G0056400 Rorug04G0063900 Rorug05G0251400 Rorug07G0221900
rosa_samantha Rh1DG169400 Rh2AG292900 Rh2DG519200 Rh4DG260600 Rh5AG042600 Rh6BG117500
rosa_wichuraiana Rw0G001900 Rw0G005150 Rw0G006380 Rw0G015140 Rw0G016320 Rw0G019440 Rw0G019840 Rw0G023740 Rw1G001590 Rw1G002180 Rw1G003560 Rw1G004280 Rw1G006110 Rw1G006680 Rw1G007920 Rw1G008480 Rw1G009120 Rw1G010310 Rw1G014900 Rw1G019650 Rw1G022070 Rw1G022170 Rw1G041570 Rw2G002740 Rw2G005760 Rw2G032370 Rw2G046770 Rw2G050600 Rw2G051420 Rw3G015930 Rw3G016280 Rw3G019580 Rw3G028420 Rw4G003430 Rw4G005350 Rw4G007530 Rw4G008150 Rw4G009580 Rw4G010250 Rw4G015800 Rw4G017000 Rw4G017910 Rw4G018510 Rw4G019700 Rw4G031010 Rw5G012650 Rw5G020140 Rw5G022060 Rw5G034420 Rw5G035560 Rw5G043010 Rw5G046750 Rw5G047340 Rw5G049500 Rw6G001390 Rw6G002210 Rw6G004530 Rw6G004770 Rw6G005100 Rw6G005890 Rw6G011860 Rw6G014680 Rw6G019480 Rw6G028970 Rw6G033800 Rw7G013050 Rw7G014800 Rw7G025760 Rw7G025850 Rw7G026730 Rw7G026870 Rw7G036330 Rw7G036430 Rw7G039320 Rw7G039510 Rw7G039560 Rw7G041370 Rw7G042050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 4 cut(s) 36, 90, 159, 239
AciI CCGC 3 cut(s) 218, 239, 275
AclWI GGATC 2 cut(s) 60, 209
AcoI YGGCCR 1 cut(s) 126
AcyI GRCGYC 1 cut(s) 66
AgsI TTSAA 2 cut(s) 61, 145
AluBI AGCT 3 cut(s) 10, 94, 115
AluI AGCT 3 cut(s) 10, 94, 115
Alw21I GWGCWC 2 cut(s) 96, 117
AlwI GGATC 2 cut(s) 60, 209
AoxI GGCC 2 cut(s) 126, 209
ApeKI GCWGC 1 cut(s) 295
AspLEI GCGC 2 cut(s) 38, 270
BalI TGGCCA 1 cut(s) 128
BanII GRGCYC 2 cut(s) 96, 117
Bbv12I GWGCWC 2 cut(s) 96, 117
BceAI ACGGC 1 cut(s) 224
BfaI CTAG 2 cut(s) 230, 245
BisI GCNGC 1 cut(s) 296
BlsI GCNGC 1 cut(s) 297
BmsI GCATC 2 cut(s) 190, 279
BpuEI CTTGAG 1 cut(s) 275
Bsa29I ATCGAT 1 cut(s) 282
BsaHI GRCGYC 1 cut(s) 66
Bse1I ACTGG 1 cut(s) 129
BseCI ATCGAT 1 cut(s) 282
BseGI GGATG 2 cut(s) 81, 270
BseNI ACTGG 1 cut(s) 129
Bsh1236I CGCG 4 cut(s) 36, 90, 159, 239
BshFI GGCC 2 cut(s) 128, 211
BshVI ATCGAT 1 cut(s) 282
BsiHKAI GWGCWC 2 cut(s) 96, 117
BsnI GGCC 2 cut(s) 128, 211
Bsp1286I GDGCHC 2 cut(s) 96, 117
Bsp143I GATC 4 cut(s) 52, 214, 226, 279
Bsp68I TCGCGA 2 cut(s) 90, 159
BspACI CCGC 3 cut(s) 218, 239, 275
BspANI GGCC 2 cut(s) 128, 211
BspDI ATCGAT 1 cut(s) 282
BspFNI CGCG 4 cut(s) 36, 90, 159, 239
BspPI GGATC 2 cut(s) 60, 209
BsrI ACTGG 1 cut(s) 129
BssMI GATC 4 cut(s) 52, 214, 226, 279
BssNI GRCGYC 1 cut(s) 66
BstACI GRCGYC 1 cut(s) 66
BstC8I GCNNGC 4 cut(s) 92, 117, 161, 204
BstF5I GGATG 2 cut(s) 81, 270
BstFNI CGCG 4 cut(s) 36, 90, 159, 239
BstHHI GCGC 2 cut(s) 38, 270
BstKTI GATC 4 cut(s) 55, 217, 229, 282
BstMBI GATC 4 cut(s) 52, 214, 226, 279
BstMWI GCNNNNNNNGC 4 cut(s) 125, 208, 217, 274
BstUI CGCG 4 cut(s) 36, 90, 159, 239
Bsu15I ATCGAT 1 cut(s) 282
BsuRI GGCC 2 cut(s) 128, 211
BsuTUI ATCGAT 1 cut(s) 282
BtgZI GCGATG 1 cut(s) 167
BtsCI GGATG 2 cut(s) 81, 270
BtuMI TCGCGA 2 cut(s) 90, 159
Cac8I GCNNGC 4 cut(s) 92, 117, 161, 204
CfoI GCGC 2 cut(s) 38, 270
ClaI ATCGAT 1 cut(s) 282
CseI GACGC 1 cut(s) 74
CviAII CATG 1 cut(s) 198
CviJI RGCY 7 cut(s) 10, 94, 115, 128, 202, 211, 298
CviKI_1 RGCY 7 cut(s) 10, 94, 115, 128, 202, 211, 298
DpnI GATC 4 cut(s) 54, 216, 228, 281
DpnII GATC 4 cut(s) 52, 214, 226, 279
EaeI YGGCCR 1 cut(s) 126
EciI GGCGGA 1 cut(s) 207
Ecl136II GAGCTC 2 cut(s) 94, 115
Eco24I GRGCYC 2 cut(s) 96, 117
Eco53kI GAGCTC 2 cut(s) 94, 115
EcoICRI GAGCTC 2 cut(s) 94, 115
EcoT38I GRGCYC 2 cut(s) 96, 117
FaeI CATG 1 cut(s) 201
FaiI YATR 3 cut(s) 25, 150, 199
FatI CATG 1 cut(s) 197
FauI CCCGC 1 cut(s) 282
Fnu4HI GCNGC 1 cut(s) 296
FokI GGATG 2 cut(s) 68, 257
FriOI GRGCYC 2 cut(s) 96, 117
Fsp4HI GCNGC 1 cut(s) 296
FspBI CTAG 2 cut(s) 230, 245
GlaI GCGC 2 cut(s) 37, 269
GluI GCNGC 1 cut(s) 296
HaeIII GGCC 2 cut(s) 128, 211
HgaI GACGC 1 cut(s) 74
HhaI GCGC 2 cut(s) 38, 270
Hin1I GRCGYC 1 cut(s) 66
Hin1II CATG 1 cut(s) 201
Hin6I GCGC 2 cut(s) 36, 268
HinP1I GCGC 2 cut(s) 36, 268
Hpy188I TCNGA 1 cut(s) 171
Hpy188III TCNNGA 3 cut(s) 50, 89, 158
Hpy99I CGWCG 1 cut(s) 227
HpyAV CCTTC 1 cut(s) 204
HpyF10VI GCNNNNNNNGC 4 cut(s) 125, 208, 217, 274
Hsp92I GRCGYC 1 cut(s) 66
Hsp92II CATG 1 cut(s) 201
HspAI GCGC 2 cut(s) 36, 268
Kzo9I GATC 4 cut(s) 52, 214, 226, 279
LpnPI CCDG 4 cut(s) 35, 110, 117, 225
LweI GCATC 2 cut(s) 190, 279
MaeI CTAG 2 cut(s) 230, 245
MaeIII GTNAC 1 cut(s) 13
MalI GATC 4 cut(s) 54, 216, 228, 281
MboI GATC 4 cut(s) 52, 214, 226, 279
MfeI CAATTG 1 cut(s) 39
MhlI GDGCHC 2 cut(s) 96, 117
MlsI TGGCCA 1 cut(s) 128
MluCI AATT 3 cut(s) 39, 56, 97
MluNI TGGCCA 1 cut(s) 128
MnlI CCTC 2 cut(s) 96, 299
Mox20I TGGCCA 1 cut(s) 128
MscI TGGCCA 1 cut(s) 128
MseI TTAA 1 cut(s) 30
Msp20I TGGCCA 1 cut(s) 128
MspA1I CMGCKG 1 cut(s) 277
MunI CAATTG 1 cut(s) 39
MvnI CGCG 4 cut(s) 36, 90, 159, 239
MwoI GCNNNNNNNGC 4 cut(s) 125, 208, 217, 274
NdeII GATC 4 cut(s) 52, 214, 226, 279
NlaIII CATG 1 cut(s) 201
NruI TCGCGA 2 cut(s) 90, 159
PkrI GCNGC 1 cut(s) 297
Psp124BI GAGCTC 2 cut(s) 96, 117
RruI TCGCGA 2 cut(s) 90, 159
SacI GAGCTC 2 cut(s) 96, 117
SaqAI TTAA 1 cut(s) 30
SatI GCNGC 1 cut(s) 296
Sau3AI GATC 4 cut(s) 52, 214, 226, 279
SduI GDGCHC 2 cut(s) 96, 117
SetI ASST 6 cut(s) 12, 96, 117, 196, 253, 291
SfaNI GCATC 2 cut(s) 190, 279
SmlI CTYRAG 1 cut(s) 290
SmoI CTYRAG 1 cut(s) 290
Sse9I AATT 3 cut(s) 39, 56, 97
SsiI CCGC 3 cut(s) 218, 239, 275
SspMI CTAG 2 cut(s) 230, 245
SstI GAGCTC 2 cut(s) 96, 117
TaqI TCGA 2 cut(s) 177, 282
TasI AATT 3 cut(s) 39, 56, 97
Tru1I TTAA 1 cut(s) 30
Tru9I TTAA 1 cut(s) 30
TseI GCWGC 1 cut(s) 295
TspDTI ATGAA 1 cut(s) 186
XspI CTAG 2 cut(s) 230, 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.