Rw1G009120

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000160
Physical Location & Seq
Reverse (-)
20083515 .. 20085672
2158 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G009120.1

Sequence Viewer

Length: 1644 bp
ATGGAAAAGTTGTGTCTTACTTTGTACTTCTCAGCATGCAAGCTGTGGCACTACATGTTATCCTTTACTACCTGCATCATCGCTCAAACTGACCTGGTCAAATACATGTTGTCGCGACCTATTTTGAGAGGACGCATTGGCAAATGGGTACTGGCCCTTTCTGAATTTTCGCTACAATATGTACCTCAAAAGGCTATAAAGGGACAGGCCATCGCGGACTTTCTGGCACATCATCCTATGTTGGAGATACCCGCAATCAAGGAGTTAGAGATAGCATCCTCCACTACAACTCGGCCAGATTTGGCGCGCATCCCAGAATACGCAATGTGGTATCAAGCCACAGTTTCCTTGCAGCCATGGGTATTATTCTTTGATGGCTCAAGAACTGAAACATTAGCAGGGGCAGGAATTGTTCTGGAAAATCCAACGGGCGATCGCTTCTCTTATTCTTTCCAACTGGAGTTTAAATGTACGAACAACCAGGCAGAGTACGAAGCTCTTATTATCAGGCTAGAGGTATTACTGGAACTGGGAGTGAGGGATGTTCAGATCCGCGGCGATTCTCAACTCGTAATAAATCAGCTTCAAGAAAAATATAGATGTGTAAGTTGGTTGCTCGTACCATATTTGAATCGGGCCATTGAGCTTCTGGATCAATTTGATGACGCCGATTTGGAGTACATCCCTCGTGAGCGGCATTTCGCAGCCAATGAGCTCGCTCAGCTGGCCACAGGCATTACATTAAAGTATGGGGTTCGCAAGCGTATTCTGAAAGTCGAGCGTCGCACACTACCTTCATGGCTGGCGCGACCTGATCCGCCTGATGATCTAGTTGTCGCAGTACTAGAACCTATTGATGTTGATTGGCGTATCCCGCTGATCGATTACCTCAAGCGACCAGGCCCCACAGCCGACAAGAAGATTCGCTTTCTCGCCTTAAACTACTTTCTCAGGGGTGATGAGCTGCGACGACGGGGGGAAGATGGCATAGACTTTCGGTGTGTCTATGGCCGCGAAGCAAAACGATTAATGCGTGAAGCGCACACAGGGATTTGCGGGTCTCATCAAGCGGGACCTAAGATGCGCTGGCTCATTAGGAGACATGGTTATTACTGGCCCAGTATTTTAAATGATTGCATTGCATTCCCCAAAGGGTGCCAGGACTGTCAAGCACATGGTCCAGTCCAGCATGTCCCTAATATTCCCATGCAACCTATAATTAAGCCTTGGCCTGCGCGAGGCTGGGCATTGGACTTGATTGGGATGATTCACCCCCACTCTTCTCTCCAACATAAGTTCATCATCGTGGCTACTGAGTTCTTCACCAAGTGGGTCGAAGCTGAACCTTTGAAGGAGGCCTCTAGCACCACCATCCTCCAGTTCATTTTTCGTAACATTATCTGCAGGTTTGGTATTCCCGAGGTGCTCAAATTAACCGGCCGCGGTAGGTGGACTCCGCGATGGGAGGGACCCTTTGTTGTTCACCGTATCCTGGAACGCGGGGCTTTTCACCTCAAAGACGTGGATGGCGACATCCATCGCAACCCCATCAACAGGCGGTTTTTGAAGAAGTACTACCCTAGTGTTTGGGAGTTCGATGATCCCCCTAATCAACCTTCTGCCCAGACCGGGGGGCAACCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

547

Amino Acids

63.19

Weight (kDa)

8.89

Isoelectric Point (pI)

38.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 124 - 242 2.2e-17 Reverse transcriptase-like
Integrase_H2C2 PF17921 339 - 392 3.4e-07 Integrase zinc binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000160)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11612 FvH4_2g25851 FvH4_3g22802 FvH4_3g22805 FvH4_3g31361 FvH4_3g31382 FvH4_4g05272 FvH4_4g05273 FvH4_4g14567 FvH4_4g15161 FvH4_5g22540 FvH4_6g13113 FvH4_6g31923 FvH4_6g31924 FvH4_6g33651 FvH4_6g45122 FvH4_7g03662
pyrus_communis pycom01g04240 pycom01g24010 pycom02g18210 pycom02g19420 pycom05g06510 pycom09g15750 pycom09g18940 pycom12g02580 pycom12g03100 pycom12g08310 pycom13g22710 pycom13g28060 pycom16g18340 pycom16g18350 pycom16g24880 pycom16g26240 pycom461g00260 pycom520g00980 pycom520g01320
rosa_chinensis RchiOBHm_Chr1g0320731 RchiOBHm_Chr2g0102771 RchiOBHm_Chr3g0462151 RchiOBHm_Chr5g0038141 RchiOBHm_Chr5g0069371 RchiOBHm_Chr7g0239101
rosa_multiflora Rmu_co8038252.1_g000001 Rmu_co8138412.1_g000001 Rmu_co8331087.1_g000001 Rmu_co8479311.1_g000001 Rmu_sc0000112.1_g000018 Rmu_sc0000346.1_g000012 Rmu_sc0002102.1_g000002 Rmu_sc0003505.1_g000013 Rmu_sc0004249.1_g000007 Rmu_sc0004448.1_g000010 Rmu_sc0004594.1_g000011 Rmu_sc0004915.1_g000010 Rmu_sc0008019.1_g000019 Rmu_sc0008303.1_g000001 Rmu_sc0008355.1_g000005 Rmu_sc0009253.1_g000018 Rmu_sc0010211.1_g000002 Rmu_sc0010252.1_g000009 Rmu_sc0011534.1_g000008 Rmu_sc0014811.1_g000009 Rmu_sc0019475.1_g000001 Rmu_sc0024897.1_g000001 Rmu_sc0024898.1_g000001 Rmu_sc0031791.1_g000001 Rmu_sc0038715.1_g000001
rosa_roxburghii Rroxscaffold_165G00436940 Rroxscaffold_174G00435270 Rroxscaffold_177G00434330 Rroxscaffold_177G00434340 Rroxscaffold_177G00434350 Rroxscaffold_1G00002160 Rroxscaffold_1G00025260 Rroxscaffold_1G00042950 Rroxscaffold_1G00068010 Rroxscaffold_2G00107530 Rroxscaffold_3G00221190 Rroxscaffold_3G00221520 Rroxscaffold_3G00223200 Rroxscaffold_4G00322230 Rroxscaffold_4G00331810 Rroxscaffold_5G00385150 Rroxscaffold_5G00387510 Rroxscaffold_6G00410520 Rroxscaffold_6G00423360 Rroxscaffold_6G00423370 Rroxscaffold_6G00429210 Rroxscaffold_7G00158300 Rroxscaffold_7G00163480 Rroxscaffold_7G00171410 Rroxscaffold_7G00178940 Rroxscaffold_7G00199480 Rroxscaffold_7G00205630 Rroxscaffold_7G00207440
rosa_rugosa Rorug01G0056400 Rorug04G0063900 Rorug05G0251400 Rorug07G0221900
rosa_samantha Rh1DG169400 Rh2AG292900 Rh2DG519200 Rh4DG260600 Rh5AG042600 Rh6BG117500
rosa_wichuraiana Rw0G001900 Rw0G005150 Rw0G006380 Rw0G015140 Rw0G016320 Rw0G019440 Rw0G019840 Rw0G023740 Rw1G001590 Rw1G002180 Rw1G003560 Rw1G004280 Rw1G006110 Rw1G006680 Rw1G007920 Rw1G008480 Rw1G009120 Rw1G010310 Rw1G014900 Rw1G019650 Rw1G022070 Rw1G022170 Rw1G041570 Rw2G002740 Rw2G005760 Rw2G032370 Rw2G046770 Rw2G050600 Rw2G051420 Rw3G015930 Rw3G016280 Rw3G019580 Rw3G028420 Rw4G003430 Rw4G005350 Rw4G007530 Rw4G008150 Rw4G009580 Rw4G010250 Rw4G015800 Rw4G017000 Rw4G017910 Rw4G018510 Rw4G019700 Rw4G031010 Rw5G012650 Rw5G020140 Rw5G022060 Rw5G034420 Rw5G035560 Rw5G043010 Rw5G046750 Rw5G047340 Rw5G049500 Rw6G001390 Rw6G002210 Rw6G004530 Rw6G004770 Rw6G005100 Rw6G005890 Rw6G011860 Rw6G014680 Rw6G019480 Rw6G028970 Rw6G033800 Rw7G013050 Rw7G014800 Rw7G025760 Rw7G025850 Rw7G026730 Rw7G026870 Rw7G036330 Rw7G036430 Rw7G039320 Rw7G039510 Rw7G039560 Rw7G041370 Rw7G042050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 80, 1395
AccB1I GGYRCC 1 cut(s) 1155
AccBSI CCGCTC 1 cut(s) 694
AclWI GGATC 4 cut(s) 544, 660, 809, 1595
AcoI YGGCCR 4 cut(s) 293, 726, 1009, 1438
AcsI RAATTY 1 cut(s) 164
AcyI GRCGYC 1 cut(s) 666
AdeI CACNNNGTG 1 cut(s) 1329
AfaI GTAC 9 cut(s) 26, 150, 183, 472, 491, 621, 680, 843, 1574
AfiI CCNNNNNNNGG 5 cut(s) 1238, 1492, 1554, 1629, 1630
AflIII ACRYGT 2 cut(s) 54, 105
AgsI TTSAA 4 cut(s) 587, 631, 1351, 1567
AjiI CACGTC 1 cut(s) 1522
AjnI CCWGG 5 cut(s) 93, 480, 898, 1158, 1491
AluBI AGCT 8 cut(s) 43, 497, 583, 646, 715, 724, 964, 1340
AluI AGCT 8 cut(s) 43, 497, 583, 646, 715, 724, 964, 1340
Alw21I GWGCWC 2 cut(s) 717, 1428
Alw26I GTCTC 2 cut(s) 1065, 1093
AlwI GGATC 4 cut(s) 544, 660, 809, 1595
Ama87I CYCGRG 1 cut(s) 1418
ApeKI GCWGC 3 cut(s) 352, 704, 964
ApoI RAATTY 1 cut(s) 164
AseI ATTAAT 1 cut(s) 1028
AsiSI GCGATCGC 1 cut(s) 436
AspLEI GCGC 6 cut(s) 307, 309, 808, 1042, 1086, 1237
AspS9I GGNCC 7 cut(s) 154, 636, 902, 1073, 1116, 1178, 1469
AsuC2I CCSGG 1 cut(s) 1630
AsuHPI GGTGA 5 cut(s) 968, 1262, 1315, 1475, 1502
AvaI CYCGRG 1 cut(s) 1418
AvaII GGWCC 3 cut(s) 1073, 1178, 1469
BalI TGGCCA 1 cut(s) 728
BanI GGYRCC 1 cut(s) 1155
BanII GRGCYC 1 cut(s) 717
BarI GAAGNNNNNNTAC 2 cut(s) 1559, 1591
BauI CACGAG 1 cut(s) 687
Bbv12I GWGCWC 2 cut(s) 717, 1428
BbvI GCAGC 3 cut(s) 364, 716, 951
BccI CCATC 8 cut(s) 218, 368, 977, 1379, 1455, 1520, 1545, 1556
BciT130I CCWGG 5 cut(s) 95, 482, 900, 1160, 1493
BciVI GTATCC 2 cut(s) 881, 1499
BcnI CCSGG 1 cut(s) 1630
BcoDI GTCTC 2 cut(s) 1065, 1093
BfaI CTAG 5 cut(s) 512, 830, 845, 1362, 1581
BfmI CTRYAG 1 cut(s) 1402
BfuAI ACCTGC 2 cut(s) 80, 1395
BfuI GTATCC 2 cut(s) 881, 1499
BisI GCNGC 7 cut(s) 353, 556, 695, 705, 965, 1012, 1441
BlpI GCTNAGC 1 cut(s) 720
BlsI GCNGC 7 cut(s) 354, 557, 696, 706, 966, 1013, 1442
BmcAI AGTACT 2 cut(s) 843, 1574
Bme1390I CCNGG 6 cut(s) 95, 482, 900, 1160, 1493, 1630
Bme18I GGWCC 3 cut(s) 1073, 1178, 1469
BmeT110I CYCGRG 1 cut(s) 1418
BmgBI CACGTC 1 cut(s) 1522
BmgT120I GGNCC 7 cut(s) 154, 636, 902, 1073, 1116, 1178, 1469
BmiI GGNNCC 5 cut(s) 904, 1074, 1157, 1470, 1471
BmrFI CCNGG 6 cut(s) 95, 482, 900, 1160, 1493, 1630
BmrI ACTGGG 2 cut(s) 539, 1113
BmsI GCATC 4 cut(s) 84, 284, 318, 1071
BmuI ACTGGG 2 cut(s) 539, 1113
BpmI CTGGAG 2 cut(s) 479, 1361
Bpu1102I GCTNAGC 1 cut(s) 720
BpuEI CTTGAG 2 cut(s) 364, 875
BpuMI CCSGG 1 cut(s) 1630
Bsa29I ATCGAT 1 cut(s) 882
BsaHI GRCGYC 1 cut(s) 666
BsaI GGTCTC 1 cut(s) 1065
BsaJI CCNNGG 6 cut(s) 356, 553, 1226, 1419, 1441, 1629
BsaXI ACNNNNNCTCC 2 cut(s) 1090, 1120
Bsc4I CCNNNNNNNGG 5 cut(s) 1238, 1492, 1554, 1629, 1630
Bse118I RCCGGY 1 cut(s) 1436
Bse1I ACTGG 8 cut(s) 156, 462, 528, 534, 1118, 1119, 1181, 1378
Bse3DI GCAATG 2 cut(s) 330, 1137
BseBI CCWGG 5 cut(s) 95, 482, 900, 1160, 1493
BseCI ATCGAT 1 cut(s) 882
BseDI CCNNGG 6 cut(s) 356, 553, 1226, 1419, 1441, 1629
BseGI GGATG 9 cut(s) 232, 275, 309, 547, 681, 1269, 1371, 1531, 1533
BseLI CCNNNNNNNGG 5 cut(s) 1238, 1492, 1554, 1629, 1630
BseMI GCAATG 2 cut(s) 330, 1137
BseMII CTCAG 4 cut(s) 45, 734, 964, 1305
BseNI ACTGG 8 cut(s) 156, 462, 528, 534, 1118, 1119, 1181, 1378
BsePI GCGCGC 1 cut(s) 305
BseX3I CGGCCG 1 cut(s) 1438
BseXI GCAGC 3 cut(s) 364, 716, 951
BseYI CCCAGC 1 cut(s) 1242
Bsh1285I CGRYCG 2 cut(s) 436, 1441
BshNI GGYRCC 1 cut(s) 1155
BshVI ATCGAT 1 cut(s) 882
BsiEI CGRYCG 2 cut(s) 436, 1441
BsiHKAI GWGCWC 2 cut(s) 717, 1428
BsiHKCI CYCGRG 1 cut(s) 1418
BsiSI CCGG 2 cut(s) 1437, 1629
BslFI GGGAC 4 cut(s) 216, 1086, 1178, 1482
BslI CCNNNNNNNGG 5 cut(s) 1238, 1492, 1554, 1629, 1630
BsmAI GTCTC 2 cut(s) 1065, 1093
BsmFI GGGAC 4 cut(s) 216, 1086, 1178, 1482
BsmI GAATGC 1 cut(s) 1142
Bso31I GGTCTC 1 cut(s) 1065
BsoBI CYCGRG 1 cut(s) 1418
Bsp1286I GDGCHC 2 cut(s) 717, 1428
Bsp143I GATC 7 cut(s) 433, 549, 652, 814, 826, 879, 1600
Bsp1720I GCTNAGC 1 cut(s) 720
Bsp19I CCATGG 1 cut(s) 356
Bsp68I TCGCGA 1 cut(s) 115
BspCNI CTCAG 4 cut(s) 44, 733, 963, 1306
BspDI ATCGAT 1 cut(s) 882
BspLI GGNNCC 5 cut(s) 904, 1074, 1157, 1470, 1471
BspMAI CTGCAG 1 cut(s) 1406
BspMI ACCTGC 2 cut(s) 80, 1395
BspPI GGATC 4 cut(s) 544, 660, 809, 1595
BspT107I GGYRCC 1 cut(s) 1155
BspTNI GGTCTC 1 cut(s) 1065
BsrBI CCGCTC 1 cut(s) 694
BsrDI GCAATG 2 cut(s) 330, 1137
BsrFI RCCGGY 1 cut(s) 1436
BsrI ACTGG 8 cut(s) 156, 462, 528, 534, 1118, 1119, 1181, 1378
BssAI RCCGGY 1 cut(s) 1436
BssECI CCNNGG 6 cut(s) 356, 553, 1226, 1419, 1441, 1629
BssHII GCGCGC 1 cut(s) 305
BssMI GATC 7 cut(s) 433, 549, 652, 814, 826, 879, 1600
BssNI GRCGYC 1 cut(s) 666
BssSI CACGAG 1 cut(s) 687
BssT1I CCWWGG 2 cut(s) 356, 1226
Bst2BI CACGAG 1 cut(s) 687
Bst2UI CCWGG 5 cut(s) 95, 482, 900, 1160, 1493
Bst4CI ACNGT 3 cut(s) 343, 1166, 1487
Bst6I CTCTTC 1 cut(s) 1285
BstACI GRCGYC 1 cut(s) 666
BstC8I GCNNGC 9 cut(s) 37, 41, 307, 717, 726, 761, 804, 1088, 1233
BstDEI CTNAG 5 cut(s) 31, 720, 950, 1077, 1314
BstDSI CCRYGG 3 cut(s) 356, 553, 1441
BstENI CCTNNNNNAGG 1 cut(s) 1236
BstF5I GGATG 9 cut(s) 232, 275, 309, 547, 681, 1269, 1371, 1531, 1533
BstHHI GCGC 6 cut(s) 307, 309, 808, 1042, 1086, 1237
BstKTI GATC 7 cut(s) 436, 552, 655, 817, 829, 882, 1603
BstMAI GTCTC 2 cut(s) 1065, 1093
BstMBI GATC 7 cut(s) 433, 549, 652, 814, 826, 879, 1600
BstMCI CGRYCG 2 cut(s) 436, 1441
BstMWI GCNNNNNNNGC 4 cut(s) 721, 725, 874, 1039
BstNI CCWGG 5 cut(s) 95, 482, 900, 1160, 1493
BstNSI RCATGY 4 cut(s) 39, 58, 109, 1193
BstSCI CCNGG 6 cut(s) 93, 480, 898, 1158, 1491, 1628
BstSFI CTRYAG 1 cut(s) 1402
BstV1I GCAGC 3 cut(s) 364, 716, 951
BstX2I RGATCY 1 cut(s) 549
BstYI RGATCY 1 cut(s) 549
BstZI CGGCCG 1 cut(s) 1438
Bsu15I ATCGAT 1 cut(s) 882
BsuI GTATCC 2 cut(s) 881, 1499
BsuTUI ATCGAT 1 cut(s) 882
BtgI CCRYGG 3 cut(s) 356, 553, 1441
BtgZI GCGATG 4 cut(s) 64, 196, 1474, 1523
BtrI CACGTC 1 cut(s) 1522
BtsCI GGATG 9 cut(s) 232, 275, 309, 547, 681, 1269, 1371, 1531, 1533
BtuMI TCGCGA 1 cut(s) 115
BveI ACCTGC 2 cut(s) 80, 1395
Cac8I GCNNGC 9 cut(s) 37, 41, 307, 717, 726, 761, 804, 1088, 1233
CfoI GCGC 6 cut(s) 307, 309, 808, 1042, 1086, 1237
Cfr10I RCCGGY 1 cut(s) 1436
Cfr13I GGNCC 7 cut(s) 154, 636, 902, 1073, 1116, 1178, 1469
Cfr42I CCGCGG 2 cut(s) 556, 1444
ClaI ATCGAT 1 cut(s) 882
CseI GACGC 3 cut(s) 141, 674, 770
CsiI ACCWGGT 1 cut(s) 93
Csp6I GTAC 9 cut(s) 25, 149, 182, 471, 490, 620, 679, 842, 1573
CviAII CATG 9 cut(s) 36, 55, 106, 357, 798, 1103, 1175, 1190, 1207
CviQI GTAC 9 cut(s) 25, 149, 182, 471, 490, 620, 679, 842, 1573
DdeI CTNAG 5 cut(s) 31, 720, 950, 1077, 1314
DpnI GATC 7 cut(s) 435, 551, 654, 816, 828, 881, 1602
DpnII GATC 7 cut(s) 433, 549, 652, 814, 826, 879, 1600
DraI TTTAAA 2 cut(s) 466, 1128
DraIII CACNNNGTG 1 cut(s) 1329
EaeI YGGCCR 4 cut(s) 293, 726, 1009, 1438
EagI CGGCCG 1 cut(s) 1438
Eam1104I CTCTTC 1 cut(s) 1285
EarI CTCTTC 1 cut(s) 1285
EciI GGCGGA 1 cut(s) 807
Ecl136II GAGCTC 1 cut(s) 715
EclXI CGGCCG 1 cut(s) 1438
Eco130I CCWWGG 2 cut(s) 356, 1226
Eco147I AGGCCT 1 cut(s) 1358
Eco24I GRGCYC 1 cut(s) 717
Eco31I GGTCTC 1 cut(s) 1065
Eco47I GGWCC 3 cut(s) 1073, 1178, 1469
Eco52I CGGCCG 1 cut(s) 1438
Eco53kI GAGCTC 1 cut(s) 715
Eco88I CYCGRG 1 cut(s) 1418
EcoICRI GAGCTC 1 cut(s) 715
EcoNI CCTNNNNNAGG 1 cut(s) 1236
EcoO109I RGGNCCY 3 cut(s) 902, 1073, 1469
EcoRII CCWGG 5 cut(s) 93, 480, 898, 1158, 1491
EcoT14I CCWWGG 2 cut(s) 356, 1226
EcoT38I GRGCYC 1 cut(s) 717
ErhI CCWWGG 2 cut(s) 356, 1226
FaeI CATG 9 cut(s) 39, 58, 109, 360, 801, 1106, 1178, 1193, 1210
FalI AAGNNNNNCTT 2 cut(s) 911, 943
FaqI GGGAC 4 cut(s) 216, 1086, 1178, 1482
FatI CATG 9 cut(s) 35, 54, 105, 356, 797, 1102, 1174, 1189, 1206
FauI CCCGC 5 cut(s) 259, 882, 1049, 1063, 1493
Fnu4HI GCNGC 7 cut(s) 353, 556, 695, 705, 965, 1012, 1441
FokI GGATG 9 cut(s) 219, 262, 296, 554, 668, 1276, 1358, 1520, 1538
FriOI GRGCYC 1 cut(s) 717
Fsp4HI GCNGC 7 cut(s) 353, 556, 695, 705, 965, 1012, 1441
FspBI CTAG 5 cut(s) 512, 830, 845, 1362, 1581
GlaI GCGC 6 cut(s) 306, 308, 807, 1041, 1085, 1236
GluI GCNGC 7 cut(s) 353, 556, 695, 705, 965, 1012, 1441
GsaI CCCAGC 1 cut(s) 1246
GsuI CTGGAG 2 cut(s) 479, 1361
HapII CCGG 2 cut(s) 1437, 1629
HgaI GACGC 3 cut(s) 141, 674, 770
HhaI GCGC 6 cut(s) 307, 309, 808, 1042, 1086, 1237
Hin1I GRCGYC 1 cut(s) 666
Hin1II CATG 9 cut(s) 39, 58, 109, 360, 801, 1106, 1178, 1193, 1210
Hin6I GCGC 6 cut(s) 305, 307, 806, 1040, 1084, 1235
HinP1I GCGC 6 cut(s) 305, 307, 806, 1040, 1084, 1235
HinfI GANTC 5 cut(s) 560, 631, 922, 1267, 1453
HpaII CCGG 2 cut(s) 1437, 1629
HphI GGTGA 5 cut(s) 968, 1262, 1315, 1475, 1502
Hpy166II GTNNAC 2 cut(s) 1452, 1483
Hpy188I TCNGA 3 cut(s) 163, 549, 771
Hpy188III TCNNGA 7 cut(s) 114, 381, 416, 587, 650, 689, 1418
Hpy8I GTNNAC 2 cut(s) 1452, 1483
Hpy99I CGWCG 3 cut(s) 786, 972, 975
HpyAV CCTTC 3 cut(s) 804, 1345, 1626
HpyCH4III ACNGT 3 cut(s) 343, 1166, 1487
HpyCH4IV ACGT 1 cut(s) 1521
HpyCH4V TGCA 7 cut(s) 39, 75, 352, 1137, 1142, 1210, 1404
HpyF10VI GCNNNNNNNGC 4 cut(s) 721, 725, 874, 1039
HpyF3I CTNAG 5 cut(s) 31, 720, 950, 1077, 1314
HpySE526I ACGT 1 cut(s) 1521
Hsp92I GRCGYC 1 cut(s) 666
Hsp92II CATG 9 cut(s) 39, 58, 109, 360, 801, 1106, 1178, 1193, 1210
HspAI GCGC 6 cut(s) 305, 307, 806, 1040, 1084, 1235
KflI GGGWCCC 1 cut(s) 1469
KspI CCGCGG 2 cut(s) 556, 1444
Kzo9I GATC 7 cut(s) 433, 549, 652, 814, 826, 879, 1600
Lsp1109I GCAGC 3 cut(s) 364, 716, 951
LweI GCATC 4 cut(s) 84, 284, 318, 1071
MabI ACCWGGT 1 cut(s) 93
MaeI CTAG 5 cut(s) 512, 830, 845, 1362, 1581
MaeII ACGT 1 cut(s) 1521
MaeIII GTNAC 1 cut(s) 1391
MalI GATC 7 cut(s) 435, 551, 654, 816, 828, 881, 1602
MbiI CCGCTC 1 cut(s) 694
MboI GATC 7 cut(s) 433, 549, 652, 814, 826, 879, 1600
MboII GAAGA 5 cut(s) 931, 992, 1272, 1312, 1579
MflI RGATCY 1 cut(s) 549
MhlI GDGCHC 2 cut(s) 717, 1428
MlsI TGGCCA 1 cut(s) 728
MluCI AATT 5 cut(s) 164, 408, 656, 1218, 1430
MluNI TGGCCA 1 cut(s) 728
MlyI GAGTC 1 cut(s) 1447
MmeI TCCRAC 4 cut(s) 222, 449, 478, 1312
Mox20I TGGCCA 1 cut(s) 728
MscI TGGCCA 1 cut(s) 728
MseI TTAA 7 cut(s) 465, 743, 938, 1028, 1127, 1221, 1433
MslI CAYNNNNRTG 1 cut(s) 1304
Msp20I TGGCCA 1 cut(s) 728
MspA1I CMGCKG 4 cut(s) 555, 724, 877, 1443
MspI CCGG 2 cut(s) 1437, 1629
MspR9I CCNGG 6 cut(s) 95, 482, 900, 1160, 1493, 1630
Mva1269I GAATGC 1 cut(s) 1142
MvaI CCWGG 5 cut(s) 95, 482, 900, 1160, 1493
MwoI GCNNNNNNNGC 4 cut(s) 721, 725, 874, 1039
NciI CCSGG 1 cut(s) 1630
NcoI CCATGG 1 cut(s) 356
NdeII GATC 7 cut(s) 433, 549, 652, 814, 826, 879, 1600
NlaIII CATG 9 cut(s) 39, 58, 109, 360, 801, 1106, 1178, 1193, 1210
NlaIV GGNNCC 5 cut(s) 904, 1074, 1157, 1470, 1471
NmeAIII GCCGAG 1 cut(s) 271
NruI TCGCGA 1 cut(s) 115
NspI RCATGY 4 cut(s) 39, 58, 109, 1193
PaeI GCATGC 1 cut(s) 39
PauI GCGCGC 1 cut(s) 305
PceI AGGCCT 1 cut(s) 1358
PciI ACATGT 2 cut(s) 54, 105
PcsI WCGNNNNNNNCGW 2 cut(s) 1030, 1527
PctI GAATGC 1 cut(s) 1142
PfeI GAWTC 4 cut(s) 560, 631, 922, 1267
PflFI GACNNNGTC 1 cut(s) 95
PfoI TCCNGGA 1 cut(s) 1491
PkrI GCNGC 7 cut(s) 354, 557, 696, 706, 966, 1013, 1442
Ple19I CGATCG 1 cut(s) 436
PleI GAGTC 1 cut(s) 1447
PpsI GAGTC 1 cut(s) 1447
PpuMI RGGWCCY 2 cut(s) 1073, 1469
PscI ACATGT 2 cut(s) 54, 105
PshBI ATTAAT 1 cut(s) 1028
Psp124BI GAGCTC 1 cut(s) 717
Psp5II RGGWCCY 2 cut(s) 1073, 1469
Psp6I CCWGG 5 cut(s) 93, 480, 898, 1158, 1491
PspFI CCCAGC 1 cut(s) 1242
PspGI CCWGG 5 cut(s) 93, 480, 898, 1158, 1491
PspN4I GGNNCC 5 cut(s) 904, 1074, 1157, 1470, 1471
PspPI GGNCC 7 cut(s) 154, 636, 902, 1073, 1116, 1178, 1469
PspPPI RGGWCCY 2 cut(s) 1073, 1469
PstI CTGCAG 1 cut(s) 1406
PsuI RGATCY 1 cut(s) 549
PsyI GACNNNGTC 1 cut(s) 95
PteI GCGCGC 1 cut(s) 305
PvuI CGATCG 1 cut(s) 436
PvuII CAGCTG 1 cut(s) 724
RgaI GCGATCGC 1 cut(s) 436
RruI TCGCGA 1 cut(s) 115
RsaI GTAC 9 cut(s) 26, 150, 183, 472, 491, 621, 680, 843, 1574
RsaNI GTAC 9 cut(s) 25, 149, 182, 471, 490, 620, 679, 842, 1573
RseI CAYNNNNRTG 1 cut(s) 1304
SacI GAGCTC 1 cut(s) 717
SacII CCGCGG 2 cut(s) 556, 1444
SaqAI TTAA 7 cut(s) 465, 743, 938, 1028, 1127, 1221, 1433
SatI GCNGC 7 cut(s) 353, 556, 695, 705, 965, 1012, 1441
Sau3AI GATC 7 cut(s) 433, 549, 652, 814, 826, 879, 1600
Sau96I GGNCC 7 cut(s) 154, 636, 902, 1073, 1116, 1178, 1469
ScaI AGTACT 2 cut(s) 843, 1574
SchI GAGTC 1 cut(s) 1447
ScrFI CCNGG 6 cut(s) 95, 482, 900, 1160, 1493, 1630
SduI GDGCHC 2 cut(s) 717, 1428
SexAI ACCWGGT 1 cut(s) 93
SfaAI GCGATCGC 1 cut(s) 436
SfaNI GCATC 4 cut(s) 84, 284, 318, 1071
SfcI CTRYAG 1 cut(s) 1402
Sfr303I CCGCGG 2 cut(s) 556, 1444
SgfI GCGATCGC 1 cut(s) 436
SgrBI CCGCGG 2 cut(s) 556, 1444
SinI GGWCC 3 cut(s) 1073, 1178, 1469
SmiMI CAYNNNNRTG 1 cut(s) 1304
SmlI CTYRAG 2 cut(s) 379, 890
SmoI CTYRAG 2 cut(s) 379, 890
SphI GCATGC 1 cut(s) 39
Sse9I AATT 5 cut(s) 164, 408, 656, 1218, 1430
SseBI AGGCCT 1 cut(s) 1358
SspI AATATT 1 cut(s) 1201
SspMI CTAG 5 cut(s) 512, 830, 845, 1362, 1581
SstI GAGCTC 1 cut(s) 717
StuI AGGCCT 1 cut(s) 1358
StyD4I CCNGG 6 cut(s) 93, 480, 898, 1158, 1491, 1628
StyI CCWWGG 2 cut(s) 356, 1226
TaaI ACNGT 3 cut(s) 343, 1166, 1487
TaiI ACGT 1 cut(s) 1524
TaqI TCGA 4 cut(s) 777, 882, 1335, 1596
TasI AATT 5 cut(s) 164, 408, 656, 1218, 1430
TatI WGTACW 4 cut(s) 24, 678, 841, 1572
TauI GCSGC 4 cut(s) 558, 697, 1014, 1443
TfiI GAWTC 4 cut(s) 560, 631, 922, 1267
Tru1I TTAA 7 cut(s) 465, 743, 938, 1028, 1127, 1221, 1433
Tru9I TTAA 7 cut(s) 465, 743, 938, 1028, 1127, 1221, 1433
TseI GCWGC 3 cut(s) 352, 704, 964
TspDTI ATGAA 3 cut(s) 786, 1288, 1372
Tth111I GACNNNGTC 1 cut(s) 95
VpaK11BI GGWCC 3 cut(s) 1073, 1178, 1469
VspI ATTAAT 1 cut(s) 1028
XagI CCTNNNNNAGG 1 cut(s) 1236
XapI RAATTY 1 cut(s) 164
XceI RCATGY 4 cut(s) 39, 58, 109, 1193
XcmI CCANNNNNNNNNTGG 1 cut(s) 646
XspI CTAG 5 cut(s) 512, 830, 845, 1362, 1581
ZrmI AGTACT 2 cut(s) 843, 1574
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.