Rroxscaffold_7G00207440

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000160
Physical Location & Seq
Forward (+)
57336792 .. 57340214
3423 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00207440.1

Sequence Viewer

Length: 540 bp
ATGGCAAAATGCGGGTCGCGTGGACTACGAGACCTCAATCTCGCTACACCAAAAGACATCTACCCCATGCCGGCCGCGGATATGTTGGTGGACGCGATAGCGAGGGACATGAACTGTTGTCCTTCATGGACTAAACCGCAGCTATCATCGATTCCGGTCGCGAGAGGAAGATCGACACAAGACCTCATTCGGCTGCCCAAGGTTCACGGGAGTATTCGAATATGTGGTCATGCCCTTTGGTCTAAAGAATGTCGGGGCCATGTATCGAGAGCTATGAACCCGATCTTCCACGACATATTGGGAAAGATCTTAGAGGTTTATATTGACGACGTGGTCATAAAATCGAAAAGACAAGGAGATTACATTACATATCTCGGGATGGTGTTTAAGCGTATGCGCTTACACAAGCTCAAGATAAACCCGCCAAGTGCGTATTCGGAGTTCAAGGGTGACTTTCTAGGATTCATTGCCCACCAAAGGGGTATTAAGGTGCACGAGGATAAGGCAAATGCATTATCAACGCATCTCCCCCACGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

179

Amino Acids

20.17

Weight (kDa)

9.56

Isoelectric Point (pI)

29.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000160)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11612 FvH4_2g25851 FvH4_3g22802 FvH4_3g22805 FvH4_3g31361 FvH4_3g31382 FvH4_4g05272 FvH4_4g05273 FvH4_4g14567 FvH4_4g15161 FvH4_5g22540 FvH4_6g13113 FvH4_6g31923 FvH4_6g31924 FvH4_6g33651 FvH4_6g45122 FvH4_7g03662
pyrus_communis pycom01g04240 pycom01g24010 pycom02g18210 pycom02g19420 pycom05g06510 pycom09g15750 pycom09g18940 pycom12g02580 pycom12g03100 pycom12g08310 pycom13g22710 pycom13g28060 pycom16g18340 pycom16g18350 pycom16g24880 pycom16g26240 pycom461g00260 pycom520g00980 pycom520g01320
rosa_chinensis RchiOBHm_Chr1g0320731 RchiOBHm_Chr2g0102771 RchiOBHm_Chr3g0462151 RchiOBHm_Chr5g0038141 RchiOBHm_Chr5g0069371 RchiOBHm_Chr7g0239101
rosa_multiflora Rmu_co8038252.1_g000001 Rmu_co8138412.1_g000001 Rmu_co8331087.1_g000001 Rmu_co8479311.1_g000001 Rmu_sc0000112.1_g000018 Rmu_sc0000346.1_g000012 Rmu_sc0002102.1_g000002 Rmu_sc0003505.1_g000013 Rmu_sc0004249.1_g000007 Rmu_sc0004448.1_g000010 Rmu_sc0004594.1_g000011 Rmu_sc0004915.1_g000010 Rmu_sc0008019.1_g000019 Rmu_sc0008303.1_g000001 Rmu_sc0008355.1_g000005 Rmu_sc0009253.1_g000018 Rmu_sc0010211.1_g000002 Rmu_sc0010252.1_g000009 Rmu_sc0011534.1_g000008 Rmu_sc0014811.1_g000009 Rmu_sc0019475.1_g000001 Rmu_sc0024897.1_g000001 Rmu_sc0024898.1_g000001 Rmu_sc0031791.1_g000001 Rmu_sc0038715.1_g000001
rosa_roxburghii Rroxscaffold_165G00436940 Rroxscaffold_174G00435270 Rroxscaffold_177G00434330 Rroxscaffold_177G00434340 Rroxscaffold_177G00434350 Rroxscaffold_1G00002160 Rroxscaffold_1G00025260 Rroxscaffold_1G00042950 Rroxscaffold_1G00068010 Rroxscaffold_2G00107530 Rroxscaffold_3G00221190 Rroxscaffold_3G00221520 Rroxscaffold_3G00223200 Rroxscaffold_4G00322230 Rroxscaffold_4G00331810 Rroxscaffold_5G00385150 Rroxscaffold_5G00387510 Rroxscaffold_6G00410520 Rroxscaffold_6G00423360 Rroxscaffold_6G00423370 Rroxscaffold_6G00429210 Rroxscaffold_7G00158300 Rroxscaffold_7G00163480 Rroxscaffold_7G00171410 Rroxscaffold_7G00178940 Rroxscaffold_7G00199480 Rroxscaffold_7G00205630 Rroxscaffold_7G00207440
rosa_rugosa Rorug01G0056400 Rorug04G0063900 Rorug05G0251400 Rorug07G0221900
rosa_samantha Rh1DG169400 Rh2AG292900 Rh2DG519200 Rh4DG260600 Rh5AG042600 Rh6BG117500
rosa_wichuraiana Rw0G001900 Rw0G005150 Rw0G006380 Rw0G015140 Rw0G016320 Rw0G019440 Rw0G019840 Rw0G023740 Rw1G001590 Rw1G002180 Rw1G003560 Rw1G004280 Rw1G006110 Rw1G006680 Rw1G007920 Rw1G008480 Rw1G009120 Rw1G010310 Rw1G014900 Rw1G019650 Rw1G022070 Rw1G022170 Rw1G041570 Rw2G002740 Rw2G005760 Rw2G032370 Rw2G046770 Rw2G050600 Rw2G051420 Rw3G015930 Rw3G016280 Rw3G019580 Rw3G028420 Rw4G003430 Rw4G005350 Rw4G007530 Rw4G008150 Rw4G009580 Rw4G010250 Rw4G015800 Rw4G017000 Rw4G017910 Rw4G018510 Rw4G019700 Rw4G031010 Rw5G012650 Rw5G020140 Rw5G022060 Rw5G034420 Rw5G035560 Rw5G043010 Rw5G046750 Rw5G047340 Rw5G049500 Rw6G001390 Rw6G002210 Rw6G004530 Rw6G004770 Rw6G005100 Rw6G005890 Rw6G011860 Rw6G014680 Rw6G019480 Rw6G028970 Rw6G033800 Rw7G013050 Rw7G014800 Rw7G025760 Rw7G025850 Rw7G026730 Rw7G026870 Rw7G036330 Rw7G036430 Rw7G039320 Rw7G039510 Rw7G039560 Rw7G041370 Rw7G042050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 332
AccII CGCG 4 cut(s) 19, 77, 95, 161
AciI CCGC 5 cut(s) 12, 75, 77, 137, 422
AcoI YGGCCR 1 cut(s) 72
AfiI CCNNNNNNNGG 3 cut(s) 70, 477, 478
AgsI TTSAA 1 cut(s) 445
AjiI CACGTC 1 cut(s) 331
AjuI GAANNNNNNNTTGG 2 cut(s) 418, 450
AluBI AGCT 3 cut(s) 142, 272, 409
AluI AGCT 3 cut(s) 142, 272, 409
Alw21I GWGCWC 1 cut(s) 495
Alw26I GTCTC 1 cut(s) 24
Alw44I GTGCAC 1 cut(s) 491
Ama87I CYCGRG 1 cut(s) 374
AoxI GGCC 2 cut(s) 72, 256
ApaLI GTGCAC 1 cut(s) 491
ApeKI GCWGC 2 cut(s) 139, 193
ArsI GACNNNNNNTTYG 3 cut(s) 31, 211, 243
AspLEI GCGC 1 cut(s) 399
AspS9I GGNCC 1 cut(s) 256
AsuHPI GGTGA 1 cut(s) 461
AsuII TTCGAA 1 cut(s) 217
AvaI CYCGRG 1 cut(s) 374
BaeGI GKGCMC 1 cut(s) 495
BauI CACGAG 1 cut(s) 494
Bbv12I GWGCWC 1 cut(s) 495
BbvI GCAGC 2 cut(s) 151, 180
BccI CCATC 1 cut(s) 373
BcoDI GTCTC 1 cut(s) 24
BfaI CTAG 1 cut(s) 458
BglII AGATCT 1 cut(s) 306
BisI GCNGC 3 cut(s) 75, 140, 194
BlsI GCNGC 3 cut(s) 76, 141, 195
BmeT110I CYCGRG 1 cut(s) 374
BmgBI CACGTC 1 cut(s) 331
BmgT120I GGNCC 1 cut(s) 256
BmiI GGNNCC 1 cut(s) 257
BmsI GCATC 1 cut(s) 532
Bpu14I TTCGAA 1 cut(s) 217
BpuEI CTTGAG 1 cut(s) 395
Bsa29I ATCGAT 1 cut(s) 149
BsaI GGTCTC 1 cut(s) 24
BsaJI CCNNGG 2 cut(s) 75, 198
BsaWI WCCGGW 1 cut(s) 154
Bsc4I CCNNNNNNNGG 3 cut(s) 70, 477, 478
Bse118I RCCGGY 1 cut(s) 70
Bse3DI GCAATG 1 cut(s) 465
BseCI ATCGAT 1 cut(s) 149
BseDI CCNNGG 2 cut(s) 75, 198
BseGI GGATG 1 cut(s) 384
BseLI CCNNNNNNNGG 3 cut(s) 70, 477, 478
BseMI GCAATG 1 cut(s) 465
BseSI GKGCMC 1 cut(s) 495
BseX3I CGGCCG 1 cut(s) 72
BseXI GCAGC 2 cut(s) 151, 180
Bsh1236I CGCG 4 cut(s) 19, 77, 95, 161
Bsh1285I CGRYCG 2 cut(s) 75, 159
BshFI GGCC 2 cut(s) 74, 258
BshVI ATCGAT 1 cut(s) 149
BsiEI CGRYCG 2 cut(s) 75, 159
BsiHKAI GWGCWC 1 cut(s) 495
BsiHKCI CYCGRG 1 cut(s) 374
BsiSI CCGG 2 cut(s) 71, 155
BslFI GGGAC 1 cut(s) 119
BslI CCNNNNNNNGG 3 cut(s) 70, 477, 478
BsmAI GTCTC 1 cut(s) 24
BsmFI GGGAC 1 cut(s) 119
BsnI GGCC 2 cut(s) 74, 258
Bso31I GGTCTC 1 cut(s) 24
BsoBI CYCGRG 1 cut(s) 374
Bsp119I TTCGAA 1 cut(s) 217
Bsp1286I GDGCHC 1 cut(s) 495
Bsp143I GATC 3 cut(s) 170, 282, 306
Bsp68I TCGCGA 1 cut(s) 161
BspACI CCGC 5 cut(s) 12, 75, 77, 137, 422
BspANI GGCC 2 cut(s) 74, 258
BspDI ATCGAT 1 cut(s) 149
BspFNI CGCG 4 cut(s) 19, 77, 95, 161
BspLI GGNNCC 1 cut(s) 257
BspT104I TTCGAA 1 cut(s) 217
BspTNI GGTCTC 1 cut(s) 24
BsrDI GCAATG 1 cut(s) 465
BsrFI RCCGGY 1 cut(s) 70
BssAI RCCGGY 1 cut(s) 70
BssECI CCNNGG 2 cut(s) 75, 198
BssMI GATC 3 cut(s) 170, 282, 306
BssSI CACGAG 1 cut(s) 494
BssT1I CCWWGG 1 cut(s) 198
Bst2BI CACGAG 1 cut(s) 494
Bst4CI ACNGT 1 cut(s) 116
BstBI TTCGAA 1 cut(s) 217
BstC8I GCNNGC 1 cut(s) 72
BstDEI CTNAG 1 cut(s) 310
BstDSI CCRYGG 1 cut(s) 75
BstF5I GGATG 1 cut(s) 384
BstFNI CGCG 4 cut(s) 19, 77, 95, 161
BstHHI GCGC 1 cut(s) 399
BstKTI GATC 3 cut(s) 173, 285, 309
BstMAI GTCTC 1 cut(s) 24
BstMBI GATC 3 cut(s) 170, 282, 306
BstMCI CGRYCG 2 cut(s) 75, 159
BstSLI GKGCMC 1 cut(s) 495
BstUI CGCG 4 cut(s) 19, 77, 95, 161
BstV1I GCAGC 2 cut(s) 151, 180
BstX2I RGATCY 1 cut(s) 306
BstYI RGATCY 1 cut(s) 306
BstZI CGGCCG 1 cut(s) 72
Bsu15I ATCGAT 1 cut(s) 149
BsuRI GGCC 2 cut(s) 74, 258
BsuTUI ATCGAT 1 cut(s) 149
BtgI CCRYGG 1 cut(s) 75
BtrI CACGTC 1 cut(s) 331
BtsCI GGATG 1 cut(s) 384
BtuMI TCGCGA 1 cut(s) 161
Cac8I GCNNGC 1 cut(s) 72
CfoI GCGC 1 cut(s) 399
Cfr10I RCCGGY 1 cut(s) 70
Cfr13I GGNCC 1 cut(s) 256
Cfr42I CCGCGG 1 cut(s) 78
ClaI ATCGAT 1 cut(s) 149
CseI GACGC 1 cut(s) 101
CviAII CATG 5 cut(s) 67, 109, 126, 230, 260
CviJI RGCY 6 cut(s) 74, 142, 193, 258, 272, 409
CviKI_1 RGCY 6 cut(s) 74, 142, 193, 258, 272, 409
DdeI CTNAG 1 cut(s) 310
DpnI GATC 3 cut(s) 172, 284, 308
DpnII GATC 3 cut(s) 170, 282, 306
DrdI GACNNNNNNGTC 1 cut(s) 332
DseDI GACNNNNNNGTC 1 cut(s) 332
EaeI YGGCCR 1 cut(s) 72
EagI CGGCCG 1 cut(s) 72
EclXI CGGCCG 1 cut(s) 72
Eco130I CCWWGG 1 cut(s) 198
Eco31I GGTCTC 1 cut(s) 24
Eco52I CGGCCG 1 cut(s) 72
Eco88I CYCGRG 1 cut(s) 374
EcoT14I CCWWGG 1 cut(s) 198
EcoT22I ATGCAT 1 cut(s) 514
ErhI CCWWGG 1 cut(s) 198
FaeI CATG 5 cut(s) 70, 112, 129, 233, 263
FalI AAGNNNNNCTT 2 cut(s) 437, 469
FaqI GGGAC 1 cut(s) 119
FatI CATG 5 cut(s) 66, 108, 125, 229, 259
FauI CCCGC 2 cut(s) 5, 429
Fnu4HI GCNGC 3 cut(s) 75, 140, 194
FokI GGATG 1 cut(s) 391
Fsp4HI GCNGC 3 cut(s) 75, 140, 194
FspBI CTAG 1 cut(s) 458
GlaI GCGC 1 cut(s) 398
GluI GCNGC 3 cut(s) 75, 140, 194
HaeIII GGCC 2 cut(s) 74, 258
HapII CCGG 2 cut(s) 71, 155
HgaI GACGC 1 cut(s) 101
HhaI GCGC 1 cut(s) 399
Hin1II CATG 5 cut(s) 70, 112, 129, 233, 263
Hin6I GCGC 1 cut(s) 397
HinP1I GCGC 1 cut(s) 397
HinfI GANTC 2 cut(s) 151, 462
HpaII CCGG 2 cut(s) 71, 155
HphI GGTGA 1 cut(s) 461
Hpy166II GTNNAC 4 cut(s) 23, 91, 205, 493
Hpy188I TCNGA 1 cut(s) 439
Hpy188III TCNNGA 4 cut(s) 160, 267, 376, 412
Hpy8I GTNNAC 4 cut(s) 23, 91, 205, 493
Hpy99I CGWCG 1 cut(s) 332
HpyAV CCTTC 1 cut(s) 132
HpyCH4III ACNGT 1 cut(s) 116
HpyCH4IV ACGT 1 cut(s) 330
HpyCH4V TGCA 2 cut(s) 493, 512
HpyF3I CTNAG 1 cut(s) 310
HpySE526I ACGT 1 cut(s) 330
Hsp92II CATG 5 cut(s) 70, 112, 129, 233, 263
HspAI GCGC 1 cut(s) 397
KroI GCCGGC 1 cut(s) 70
KroNI GCCGGC 1 cut(s) 72
KspI CCGCGG 1 cut(s) 78
Kzo9I GATC 3 cut(s) 170, 282, 306
LpnPI CCDG 2 cut(s) 84, 168
Lsp1109I GCAGC 2 cut(s) 151, 180
LweI GCATC 1 cut(s) 532
MaeI CTAG 1 cut(s) 458
MaeII ACGT 1 cut(s) 330
MaeIII GTNAC 1 cut(s) 449
MalI GATC 3 cut(s) 172, 284, 308
MboI GATC 3 cut(s) 170, 282, 306
MboII GAAGA 2 cut(s) 180, 277
MflI RGATCY 1 cut(s) 306
MhlI GDGCHC 1 cut(s) 495
MnlI CCTC 6 cut(s) 44, 96, 158, 194, 307, 490
Mph1103I ATGCAT 1 cut(s) 514
MroNI GCCGGC 1 cut(s) 70
MseI TTAA 2 cut(s) 387, 486
MspA1I CMGCKG 1 cut(s) 77
MspI CCGG 2 cut(s) 71, 155
MvnI CGCG 4 cut(s) 19, 77, 95, 161
NaeI GCCGGC 1 cut(s) 72
NdeII GATC 3 cut(s) 170, 282, 306
NgoMIV GCCGGC 1 cut(s) 70
NlaIII CATG 5 cut(s) 70, 112, 129, 233, 263
NlaIV GGNNCC 1 cut(s) 257
NmuCI GTSAC 1 cut(s) 449
NruI TCGCGA 1 cut(s) 161
NsiI ATGCAT 1 cut(s) 514
NspV TTCGAA 1 cut(s) 217
PdiI GCCGGC 1 cut(s) 72
PfeI GAWTC 2 cut(s) 151, 462
PflFI GACNNNGTC 1 cut(s) 332
PkrI GCNGC 3 cut(s) 76, 141, 195
PspN4I GGNNCC 1 cut(s) 257
PspPI GGNCC 1 cut(s) 256
PsrI GAACNNNNNNTAC 2 cut(s) 425, 457
PsuI RGATCY 1 cut(s) 306
PsyI GACNNNGTC 1 cut(s) 332
RruI TCGCGA 1 cut(s) 161
SacII CCGCGG 1 cut(s) 78
SaqAI TTAA 2 cut(s) 387, 486
SatI GCNGC 3 cut(s) 75, 140, 194
Sau3AI GATC 3 cut(s) 170, 282, 306
Sau96I GGNCC 1 cut(s) 256
SduI GDGCHC 1 cut(s) 495
SetI ASST 9 cut(s) 36, 144, 186, 204, 274, 318, 333, 411, 492
SfaNI GCATC 1 cut(s) 532
Sfr303I CCGCGG 1 cut(s) 78
SfuI TTCGAA 1 cut(s) 217
SgrBI CCGCGG 1 cut(s) 78
SmlI CTYRAG 1 cut(s) 410
SmoI CTYRAG 1 cut(s) 410
SsiI CCGC 5 cut(s) 12, 75, 77, 137, 422
SspMI CTAG 1 cut(s) 458
StyI CCWWGG 1 cut(s) 198
TaaI ACNGT 1 cut(s) 116
TaiI ACGT 1 cut(s) 333
TaqI TCGA 5 cut(s) 149, 173, 217, 266, 344
TauI GCSGC 1 cut(s) 77
TfiI GAWTC 2 cut(s) 151, 462
Tru1I TTAA 2 cut(s) 387, 486
Tru9I TTAA 2 cut(s) 387, 486
TseFI GTSAC 1 cut(s) 449
TseI GCWGC 2 cut(s) 139, 193
Tsp45I GTSAC 1 cut(s) 449
TspDTI ATGAA 4 cut(s) 114, 125, 290, 454
Tth111I GACNNNGTC 1 cut(s) 332
VneI GTGCAC 1 cut(s) 491
XspI CTAG 1 cut(s) 458
Zsp2I ATGCAT 1 cut(s) 514
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.