Rw6G005890

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000160
Physical Location & Seq
Forward (+)
9463158 .. 9465943
2786 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G005890.1

Sequence Viewer

Length: 2253 bp
ATGCCTTTTGGACTGAAGAATGCTGGAGCAACATATCAGAGAGCTATGAACCTGATCTTCCACGACATACTTGGGAAGATCTTAGAGGTTTACATTGATGACGTTGTCGTGAAGTCTAAGAAGAGTGGAGATCACTTCACCGATCTCAGAAAAGTTTTCAAGCGCATGCAGCTACACAAGCTCAAGATGAATCCCGCCAAGTGCGTTTTTGGAGTTCAGGCAGGAGATTTCCTGGGATTCATTGTCCATCAAAGAGGCATTGAGGTCCCTGAGGATAAAGCAAACGCGGTCATCAATGCATCTCCCCCGCGAACGAAGAAAGAGTTACAGCGACTACTGGGTAGGATCAACTTTTTGCGACGATTCATTTCTAACTCTTCAGGAAAATCCATCCAGGTCGCTGCCACAACTTTAGATCGCCCGGATTTAGCGTGCTTGCCAGAGTACGCCATGCTTTATCAAGACACAATCTCACTCCAGCCTTGGGTGTTATATTTTGACGGGTCAAGAACAGATACGCTAGCAGGAGCAGGGGTTGTCTTGGAAAACCCGGCCGGCGATCGATTTTCCTACTCTTTCCAGTTGGAGTTCCAGTGTACCAATAACCAAGCAGAATATGAGGCCCTCATTATAGGCCTAGAAGTACTACTGGAAATGGGAATCGGAGATGTACAAATACTTGGCGACTCTCTCTTGGTTATCAATCAGTTGTGCAACGAGTTCAGATGCAATAGCTTCACGTTGGTTCCTTATTGGAACAGGGCATTAGACCTGTTGGACCAGTTTGATAACATACATCTAGAGTACATTCCTCGCGAGCGAAATTTTGCAGCGAACGAGTTGGCCCAACTAGCAACAGGGGTAACATTGAGATATGGTGTGCGGGAGAGAATCCTTAAAGTCGAGCGTCGCACGCTTCCTTCATGGATGGCGAGAAGAGATCCTCCAGATGATACCTTAGTCGCGACCCTGGAACCCATTGACGTGGATTGGCGCATCCCTTTGATCGCTTATCTCAAGCAGCCAGATCCCATTGCCGACAGGAAGATTCGTTTTCTTGCACTAAATTACTTTCTTAGAGGTGACGAGCTGCGACGACGAGGCGAAGATGGCATAGACTTCAGATGTGTTTATGGTCGCGAAGCGAAACAACTCATGCGCGAAGTTCATTCCGGCATTTGCGGTGCTCACCAAGCAGGTCCAAAGATGCGATGGTTGCTCAGACGACATGGATATTTTTGGCCCAGTATCTTGAAGGATTGCATCGCATTCGCTAAAGGTTGTTTGGACTGCCAAGCTCATGGGCCGGTCCAGCATGTCCCTAATGTTCCAATGCAACCCATTATTAAGCCTTGGCCCGCAAGAGGATGGGCGCTTGATTTAATTGGGATGATTCACCCACATTCATCACTTCAGCACAAGTTCATCATCGTCGCGACCGATTTCTTTACAAAATGGGTCGAAGCAGAACCTTTGAAAGAAGCATCTGGTGGTACGTTGCGACAATTCCTATTTAGGAACATCATATGCAGATTTGGTATCCCAGAAGTTTTTGTTTCGGACCGGGGGGCAGCTTTCATGGGTGGTGAAGTTGATAAACTGGCAAAGGAATGGGGAATACAGTTCGTCCATTCCAGTCCTTATTATGCTCAGTCTAACGGTCAAGCGGAGGCCAGCAATAAAATCATCATCACTTTGCTGAAGAAAATGTTGGAAGCTAATCCGCGACAATGGCATGAGACCCTTTATGAGACTCTTTGGGCCTACCGCACATCGAAGCGAAATCCCACCGCGACTACACCTTATGCTTTGATGTTTGGCCATGACGCAGTCCTGCCTTTGGAAGTCAACGTCCAATCATTACGAGTCCAAGAGCAACATCATCTCATTGGAGAAGACTACGTTCAGGCTATGTGGCAGGAACATGAAGACCTTAGCGAAAAGCGCTTGGAGGCTTTAGATAATTTGGTCATGGAAAAGCAACGAGTCGCTCGAGCCTATGACAAGCGAACAAGGGGAAGGAATTACAGCGAAGGAGAGTTGGTTTGGAAAGCAGTTCTCCCGCTTGGCGAAAAATTAGATGGTCGCGGCAAATGGACTCCAAGATGGGAAGGCCCGTACATCATTTATAAAATCTTAGGGAAAGGAGCTTTTCATCTCAAGGACCTGGATGGAGATGTCCATCATAACCCTATCAATGGGAGATACTTGAAGAAATACTTTCTCAATATCTGGGACGCGGATGAGTCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

750

Amino Acids

85.99

Weight (kDa)

8.54

Isoelectric Point (pI)

33.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_1 PF00078 1 - 82 2.1e-14 Reverse transcriptase (RNA-dependent DNA polymerase)
RVT_3 PF13456 166 - 284 3.2e-20 Reverse transcriptase-like
Integrase_H2C2 PF17921 381 - 434 7.2e-08 Integrase zinc binding domain
rve PF00665 455 - 549 2.6e-09 Integrase core domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000160)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11612 FvH4_2g25851 FvH4_3g22802 FvH4_3g22805 FvH4_3g31361 FvH4_3g31382 FvH4_4g05272 FvH4_4g05273 FvH4_4g14567 FvH4_4g15161 FvH4_5g22540 FvH4_6g13113 FvH4_6g31923 FvH4_6g31924 FvH4_6g33651 FvH4_6g45122 FvH4_7g03662
pyrus_communis pycom01g04240 pycom01g24010 pycom02g18210 pycom02g19420 pycom05g06510 pycom09g15750 pycom09g18940 pycom12g02580 pycom12g03100 pycom12g08310 pycom13g22710 pycom13g28060 pycom16g18340 pycom16g18350 pycom16g24880 pycom16g26240 pycom461g00260 pycom520g00980 pycom520g01320
rosa_chinensis RchiOBHm_Chr1g0320731 RchiOBHm_Chr2g0102771 RchiOBHm_Chr3g0462151 RchiOBHm_Chr5g0038141 RchiOBHm_Chr5g0069371 RchiOBHm_Chr7g0239101
rosa_multiflora Rmu_co8038252.1_g000001 Rmu_co8138412.1_g000001 Rmu_co8331087.1_g000001 Rmu_co8479311.1_g000001 Rmu_sc0000112.1_g000018 Rmu_sc0000346.1_g000012 Rmu_sc0002102.1_g000002 Rmu_sc0003505.1_g000013 Rmu_sc0004249.1_g000007 Rmu_sc0004448.1_g000010 Rmu_sc0004594.1_g000011 Rmu_sc0004915.1_g000010 Rmu_sc0008019.1_g000019 Rmu_sc0008303.1_g000001 Rmu_sc0008355.1_g000005 Rmu_sc0009253.1_g000018 Rmu_sc0010211.1_g000002 Rmu_sc0010252.1_g000009 Rmu_sc0011534.1_g000008 Rmu_sc0014811.1_g000009 Rmu_sc0019475.1_g000001 Rmu_sc0024897.1_g000001 Rmu_sc0024898.1_g000001 Rmu_sc0031791.1_g000001 Rmu_sc0038715.1_g000001
rosa_roxburghii Rroxscaffold_165G00436940 Rroxscaffold_174G00435270 Rroxscaffold_177G00434330 Rroxscaffold_177G00434340 Rroxscaffold_177G00434350 Rroxscaffold_1G00002160 Rroxscaffold_1G00025260 Rroxscaffold_1G00042950 Rroxscaffold_1G00068010 Rroxscaffold_2G00107530 Rroxscaffold_3G00221190 Rroxscaffold_3G00221520 Rroxscaffold_3G00223200 Rroxscaffold_4G00322230 Rroxscaffold_4G00331810 Rroxscaffold_5G00385150 Rroxscaffold_5G00387510 Rroxscaffold_6G00410520 Rroxscaffold_6G00423360 Rroxscaffold_6G00423370 Rroxscaffold_6G00429210 Rroxscaffold_7G00158300 Rroxscaffold_7G00163480 Rroxscaffold_7G00171410 Rroxscaffold_7G00178940 Rroxscaffold_7G00199480 Rroxscaffold_7G00205630 Rroxscaffold_7G00207440
rosa_rugosa Rorug01G0056400 Rorug04G0063900 Rorug05G0251400 Rorug07G0221900
rosa_samantha Rh1DG169400 Rh2AG292900 Rh2DG519200 Rh4DG260600 Rh5AG042600 Rh6BG117500
rosa_wichuraiana Rw0G001900 Rw0G005150 Rw0G006380 Rw0G015140 Rw0G016320 Rw0G019440 Rw0G019840 Rw0G023740 Rw1G001590 Rw1G002180 Rw1G003560 Rw1G004280 Rw1G006110 Rw1G006680 Rw1G007920 Rw1G008480 Rw1G009120 Rw1G010310 Rw1G014900 Rw1G019650 Rw1G022070 Rw1G022170 Rw1G041570 Rw2G002740 Rw2G005760 Rw2G032370 Rw2G046770 Rw2G050600 Rw2G051420 Rw3G015930 Rw3G016280 Rw3G019580 Rw3G028420 Rw4G003430 Rw4G005350 Rw4G007530 Rw4G008150 Rw4G009580 Rw4G010250 Rw4G015800 Rw4G017000 Rw4G017910 Rw4G018510 Rw4G019700 Rw4G031010 Rw5G012650 Rw5G020140 Rw5G022060 Rw5G034420 Rw5G035560 Rw5G043010 Rw5G046750 Rw5G047340 Rw5G049500 Rw6G001390 Rw6G002210 Rw6G004530 Rw6G004770 Rw6G005100 Rw6G005890 Rw6G011860 Rw6G014680 Rw6G019480 Rw6G028970 Rw6G033800 Rw7G013050 Rw7G014800 Rw7G025760 Rw7G025850 Rw7G026730 Rw7G026870 Rw7G036330 Rw7G036430 Rw7G039320 Rw7G039510 Rw7G039560 Rw7G041370 Rw7G042050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2130
Acc36I ACCTGC 1 cut(s) 1187
AclWI GGATC 3 cut(s) 353, 935, 1022
AcoI YGGCCR 2 cut(s) 552, 1819
AcsI RAATTY 1 cut(s) 823
AcuI CTGAAG 5 cut(s) 35, 363, 1105, 1397, 1721
AfaI GTAC 7 cut(s) 446, 598, 645, 672, 806, 1495, 2120
AfeI AGCGCT 1 cut(s) 1946
AfiI CCNNNNNNNGG 4 cut(s) 484, 1364, 1840, 2198
AgsI TTSAA 4 cut(s) 160, 1255, 1477, 2212
AjiI CACGTC 1 cut(s) 985
AjnI CCWGG 4 cut(s) 231, 393, 969, 2166
AjuI GAANNNNNNNTTGG 2 cut(s) 1694, 1726
AluBI AGCT 9 cut(s) 44, 172, 181, 735, 1090, 1298, 1574, 1718, 2150
AluI AGCT 9 cut(s) 44, 172, 181, 735, 1090, 1298, 1574, 1718, 2150
Alw21I GWGCWC 1 cut(s) 1189
Alw26I GTCTC 2 cut(s) 1733, 1745
AlwI GGATC 3 cut(s) 353, 935, 1022
Ama87I CYCGRG 1 cut(s) 1992
Aor51HI AGCGCT 1 cut(s) 1946
ApeKI GCWGC 6 cut(s) 169, 401, 830, 1021, 1090, 1571
ApoI RAATTY 1 cut(s) 823
AspLEI GCGC 5 cut(s) 165, 996, 1161, 1375, 1947
AsuC2I CCSGG 3 cut(s) 422, 551, 1565
AsuHPI GGTGA 5 cut(s) 130, 1094, 1181, 1388, 1598
AsuNHI GCTAGC 1 cut(s) 520
AvaI CYCGRG 1 cut(s) 1992
AvaII GGWCC 6 cut(s) 265, 778, 1199, 1309, 1561, 2164
AxyI CCTNAGG 1 cut(s) 270
BaeI ACNNNNGTAYC 2 cut(s) 945, 978
BalI TGGCCA 1 cut(s) 1821
BbsI GAAGAC 2 cut(s) 1902, 1935
Bbv12I GWGCWC 1 cut(s) 1189
BbvI GCAGC 6 cut(s) 181, 388, 842, 1033, 1077, 1583
BcgI CGANNNNNNTGC 2 cut(s) 1252, 1286
BciT130I CCWGG 4 cut(s) 233, 395, 971, 2168
BciVI GTATCC 1 cut(s) 1550
BcnI CCSGG 3 cut(s) 422, 551, 1565
BcoDI GTCTC 2 cut(s) 1733, 1745
BfaI CTAG 4 cut(s) 521, 638, 800, 851
BfoI RGCGCY 2 cut(s) 1376, 1948
BfuAI ACCTGC 1 cut(s) 1187
BfuI GTATCC 1 cut(s) 1550
BglII AGATCT 1 cut(s) 78
BisI GCNGC 7 cut(s) 170, 402, 831, 1022, 1091, 1572, 2089
BlsI GCNGC 7 cut(s) 171, 403, 832, 1023, 1092, 1573, 2090
BmcAI AGTACT 1 cut(s) 645
Bme1390I CCNGG 7 cut(s) 233, 395, 422, 551, 971, 1565, 2168
Bme18I GGWCC 6 cut(s) 265, 778, 1199, 1309, 1561, 2164
BmeT110I CYCGRG 1 cut(s) 1992
BmgBI CACGTC 1 cut(s) 985
BmiI GGNNCC 3 cut(s) 267, 747, 975
BmrFI CCNGG 7 cut(s) 233, 395, 422, 551, 971, 1565, 2168
BmrI ACTGGG 2 cut(s) 347, 1239
BmsI GCATC 6 cut(s) 308, 716, 1005, 1197, 1272, 1493
BmtI GCTAGC 1 cut(s) 524
BmuI ACTGGG 2 cut(s) 347, 1239
BpiI GAAGAC 2 cut(s) 1902, 1935
BpmI CTGGAG 3 cut(s) 45, 461, 930
Bpu10I CCTNAGC 1 cut(s) 1934
BpuEI CTTGAG 3 cut(s) 167, 1001, 2144
BpuMI CCSGG 3 cut(s) 422, 551, 1565
Bsa29I ATCGAT 1 cut(s) 562
BsaBI GATNNNNATC 1 cut(s) 2181
BsaI GGTCTC 1 cut(s) 1733
BsaJI CCNNGG 5 cut(s) 232, 482, 969, 1352, 1564
BsaXI ACNNNNNCTCC 6 cut(s) 519, 549, 578, 608, 2028, 2058
Bsc4I CCNNNNNNNGG 4 cut(s) 484, 1364, 1840, 2198
Bse118I RCCGGY 2 cut(s) 554, 1306
Bse1I ACTGG 8 cut(s) 342, 580, 592, 654, 781, 1245, 1605, 1635
Bse21I CCTNAGG 1 cut(s) 270
Bse3DI GCAATG 1 cut(s) 1032
Bse8I GATNNNNATC 1 cut(s) 2181
BseBI CCWGG 4 cut(s) 233, 395, 971, 2168
BseCI ATCGAT 1 cut(s) 562
BseDI CCNNGG 5 cut(s) 232, 482, 969, 1352, 1564
BseGI GGATG 7 cut(s) 390, 933, 996, 1373, 1395, 2176, 2248
BseJI GATNNNNATC 1 cut(s) 2181
BseLI CCNNNNNNNGG 4 cut(s) 484, 1364, 1840, 2198
BseMI GCAATG 1 cut(s) 1032
BseMII CTCAG 4 cut(s) 160, 261, 1234, 1664
BseNI ACTGG 8 cut(s) 342, 580, 592, 654, 781, 1245, 1605, 1635
BseX3I CGGCCG 1 cut(s) 552
BseXI GCAGC 6 cut(s) 181, 388, 842, 1033, 1077, 1583
Bsh1285I CGRYCG 3 cut(s) 555, 562, 1440
BshVI ATCGAT 1 cut(s) 562
BsiEI CGRYCG 3 cut(s) 555, 562, 1440
BsiHKAI GWGCWC 1 cut(s) 1189
BsiHKCI CYCGRG 1 cut(s) 1992
BsiSI CCGG 6 cut(s) 422, 551, 555, 1173, 1307, 1564
BslFI GGGAC 3 cut(s) 251, 1304, 2249
BslI CCNNNNNNNGG 4 cut(s) 484, 1364, 1840, 2198
BsmAI GTCTC 2 cut(s) 1733, 1745
BsmFI GGGAC 3 cut(s) 251, 1304, 2249
BsmI GAATGC 2 cut(s) 25, 1268
Bso31I GGTCTC 1 cut(s) 1733
BsoBI CYCGRG 1 cut(s) 1992
Bsp1286I GDGCHC 1 cut(s) 1189
Bsp1407I TGTACA 1 cut(s) 670
Bsp68I TCGCGA 4 cut(s) 816, 965, 1140, 1436
BspCNI CTCAG 4 cut(s) 159, 262, 1233, 1663
BspDI ATCGAT 1 cut(s) 562
BspLI GGNNCC 3 cut(s) 267, 747, 975
BspMI ACCTGC 1 cut(s) 1187
BspOI GCTAGC 1 cut(s) 524
BspPI GGATC 3 cut(s) 353, 935, 1022
BspTNI GGTCTC 1 cut(s) 1733
BsrDI GCAATG 1 cut(s) 1032
BsrFI RCCGGY 2 cut(s) 554, 1306
BsrGI TGTACA 1 cut(s) 670
BsrI ACTGG 8 cut(s) 342, 580, 592, 654, 781, 1245, 1605, 1635
BssAI RCCGGY 2 cut(s) 554, 1306
BssECI CCNNGG 5 cut(s) 232, 482, 969, 1352, 1564
BssT1I CCWWGG 2 cut(s) 482, 1352
Bst2UI CCWGG 4 cut(s) 233, 395, 971, 2168
Bst4CI ACNGT 2 cut(s) 1623, 1661
Bst6I CTCTTC 3 cut(s) 116, 382, 931
BstAUI TGTACA 1 cut(s) 670
BstC8I GCNNGC 9 cut(s) 167, 433, 437, 522, 556, 818, 914, 1359, 1675
BstF5I GGATG 7 cut(s) 390, 933, 996, 1373, 1395, 2176, 2248
BstH2I RGCGCY 2 cut(s) 1376, 1948
BstHHI GCGC 5 cut(s) 165, 996, 1161, 1375, 1947
BstMAI GTCTC 2 cut(s) 1733, 1745
BstMCI CGRYCG 3 cut(s) 555, 562, 1440
BstNI CCWGG 4 cut(s) 233, 395, 971, 2168
BstNSI RCATGY 2 cut(s) 169, 1319
BstSCI CCNGG 7 cut(s) 231, 393, 420, 549, 969, 1563, 2166
BstV1I GCAGC 6 cut(s) 181, 388, 842, 1033, 1077, 1583
BstV2I GAAGAC 2 cut(s) 1902, 1935
BstX2I RGATCY 3 cut(s) 78, 940, 1027
BstXI CCANNNNNNTGG 2 cut(s) 985, 1301
BstYI RGATCY 3 cut(s) 78, 940, 1027
BstZI CGGCCG 1 cut(s) 552
Bsu15I ATCGAT 1 cut(s) 562
Bsu36I CCTNAGG 1 cut(s) 270
BsuI GTATCC 1 cut(s) 1550
BsuTUI ATCGAT 1 cut(s) 562
BtgZI GCGATG 2 cut(s) 1225, 1249
BtrI CACGTC 1 cut(s) 985
BtsCI GGATG 7 cut(s) 390, 933, 996, 1373, 1395, 2176, 2248
BtsIMutI CAGTG 1 cut(s) 599
BtuMI TCGCGA 4 cut(s) 816, 965, 1140, 1436
BveI ACCTGC 1 cut(s) 1187
Cac8I GCNNGC 9 cut(s) 167, 433, 437, 522, 556, 818, 914, 1359, 1675
CfoI GCGC 5 cut(s) 165, 996, 1161, 1375, 1947
Cfr10I RCCGGY 2 cut(s) 554, 1306
ClaI ATCGAT 1 cut(s) 562
CpoI CGGWCCG 1 cut(s) 1561
CseI GACGC 3 cut(s) 896, 1835, 2246
Csp6I GTAC 7 cut(s) 445, 597, 644, 671, 805, 1494, 2119
CspI CGGWCCG 1 cut(s) 1561
CviQI GTAC 7 cut(s) 445, 597, 644, 671, 805, 1494, 2119
EaeI YGGCCR 2 cut(s) 552, 1819
EagI CGGCCG 1 cut(s) 552
Eam1104I CTCTTC 3 cut(s) 116, 382, 931
EarI CTCTTC 3 cut(s) 116, 382, 931
EclXI CGGCCG 1 cut(s) 552
Eco130I CCWWGG 2 cut(s) 482, 1352
Eco147I AGGCCT 1 cut(s) 636
Eco31I GGTCTC 1 cut(s) 1733
Eco47I GGWCC 6 cut(s) 265, 778, 1199, 1309, 1561, 2164
Eco47III AGCGCT 1 cut(s) 1946
Eco52I CGGCCG 1 cut(s) 552
Eco57I CTGAAG 5 cut(s) 35, 363, 1105, 1397, 1721
Eco81I CCTNAGG 1 cut(s) 270
Eco88I CYCGRG 1 cut(s) 1992
EcoO109I RGGNCCY 3 cut(s) 265, 622, 2164
EcoRII CCWGG 4 cut(s) 231, 393, 969, 2166
EcoT14I CCWWGG 2 cut(s) 482, 1352
EcoT22I ATGCAT 1 cut(s) 301
ErhI CCWWGG 2 cut(s) 482, 1352
FalI AAGNNNNNCTT 2 cut(s) 2204, 2236
FaqI GGGAC 3 cut(s) 251, 1304, 2249
FauI CCCGC 5 cut(s) 202, 315, 876, 1366, 2070
FauNDI CATATG 1 cut(s) 1526
Fnu4HI GCNGC 7 cut(s) 170, 402, 831, 1022, 1091, 1572, 2089
FokI GGATG 6 cut(s) 377, 940, 983, 1380, 1402, 2183
Fsp4HI GCNGC 7 cut(s) 170, 402, 831, 1022, 1091, 1572, 2089
FspBI CTAG 4 cut(s) 521, 638, 800, 851
GlaI GCGC 5 cut(s) 164, 995, 1160, 1374, 1946
GluI GCNGC 7 cut(s) 170, 402, 831, 1022, 1091, 1572, 2089
GsuI CTGGAG 3 cut(s) 45, 461, 930
HaeII RGCGCY 2 cut(s) 1376, 1948
HapII CCGG 6 cut(s) 422, 551, 555, 1173, 1307, 1564
HgaI GACGC 3 cut(s) 896, 1835, 2246
HhaI GCGC 5 cut(s) 165, 996, 1161, 1375, 1947
Hin6I GCGC 5 cut(s) 163, 994, 1159, 1373, 1945
HinP1I GCGC 5 cut(s) 163, 994, 1159, 1373, 1945
HincII GTYRAC 1 cut(s) 1849
HindII GTYRAC 1 cut(s) 1849
HpaII CCGG 6 cut(s) 422, 551, 555, 1173, 1307, 1564
HphI GGTGA 5 cut(s) 130, 1094, 1181, 1388, 1598
Hpy166II GTNNAC 3 cut(s) 91, 597, 1849
Hpy188I TCNGA 7 cut(s) 39, 149, 665, 725, 1124, 1223, 1561
Hpy8I GTNNAC 3 cut(s) 91, 597, 1849
Hpy99I CGWCG 5 cut(s) 363, 912, 1098, 1101, 1436
HpyAV CCTTC 5 cut(s) 930, 1249, 2013, 2027, 2105
HpyCH4III ACNGT 2 cut(s) 1623, 1661
HpyCH4IV ACGT 6 cut(s) 102, 740, 984, 1496, 1851, 1902
HpyCH4V TGCA 9 cut(s) 169, 299, 714, 729, 830, 1061, 1263, 1336, 1530
HpySE526I ACGT 6 cut(s) 102, 740, 984, 1496, 1851, 1902
HspAI GCGC 5 cut(s) 163, 994, 1159, 1373, 1945
KroI GCCGGC 1 cut(s) 554
KroNI GCCGGC 1 cut(s) 556
LmnI GCTCC 3 cut(s) 26, 527, 2147
Lsp1109I GCAGC 6 cut(s) 181, 388, 842, 1033, 1077, 1583
LweI GCATC 6 cut(s) 308, 716, 1005, 1197, 1272, 1493
MaeI CTAG 4 cut(s) 521, 638, 800, 851
MaeII ACGT 6 cut(s) 102, 740, 984, 1496, 1851, 1902
MaeIII GTNAC 3 cut(s) 324, 862, 1082
MflI RGATCY 3 cut(s) 78, 940, 1027
MhlI GDGCHC 1 cut(s) 1189
MlsI TGGCCA 1 cut(s) 1821
MluCI AATT 7 cut(s) 823, 1066, 1383, 1505, 1963, 2023, 2075
MluNI TGGCCA 1 cut(s) 1821
MlyI GAGTC 5 cut(s) 680, 1747, 1875, 1995, 2092
MmeI TCCRAC 3 cut(s) 564, 756, 1692
Mox20I TGGCCA 1 cut(s) 1821
Mph1103I ATGCAT 1 cut(s) 301
MroNI GCCGGC 1 cut(s) 554
MscI TGGCCA 1 cut(s) 1821
MseI TTAA 3 cut(s) 897, 1347, 1382
MslI CAYNNNNRTG 1 cut(s) 983
Msp20I TGGCCA 1 cut(s) 1821
MspI CCGG 6 cut(s) 422, 551, 555, 1173, 1307, 1564
MspR9I CCNGG 7 cut(s) 233, 395, 422, 551, 971, 1565, 2168
Mva1269I GAATGC 2 cut(s) 25, 1268
MvaI CCWGG 4 cut(s) 233, 395, 971, 2168
NaeI GCCGGC 1 cut(s) 556
NciI CCSGG 3 cut(s) 422, 551, 1565
NdeI CATATG 1 cut(s) 1526
NgoMIV GCCGGC 1 cut(s) 554
NheI GCTAGC 1 cut(s) 520
NlaIV GGNNCC 3 cut(s) 267, 747, 975
NmuCI GTSAC 1 cut(s) 1082
NruI TCGCGA 4 cut(s) 816, 965, 1140, 1436
NsiI ATGCAT 1 cut(s) 301
NspI RCATGY 2 cut(s) 169, 1319
PaeI GCATGC 1 cut(s) 169
PaeR7I CTCGAG 1 cut(s) 1992
PceI AGGCCT 1 cut(s) 636
PcsI WCGNNNNNNNCGW 2 cut(s) 1437, 1990
PctI GAATGC 2 cut(s) 25, 1268
PdiI GCCGGC 1 cut(s) 556
PfeI GAWTC 7 cut(s) 190, 237, 363, 660, 891, 1048, 1393
PflFI GACNNNGTC 2 cut(s) 104, 1829
PkrI GCNGC 7 cut(s) 171, 403, 832, 1023, 1092, 1573, 2090
Ple19I CGATCG 1 cut(s) 562
PleI GAGTC 5 cut(s) 680, 1747, 1874, 1994, 2092
PpsI GAGTC 5 cut(s) 680, 1747, 1874, 1994, 2092
PpuMI RGGWCCY 2 cut(s) 265, 2164
PsiI TTATAA 1 cut(s) 2130
Psp5II RGGWCCY 2 cut(s) 265, 2164
Psp6I CCWGG 4 cut(s) 231, 393, 969, 2166
PspGI CCWGG 4 cut(s) 231, 393, 969, 2166
PspN4I GGNNCC 3 cut(s) 267, 747, 975
PspPPI RGGWCCY 2 cut(s) 265, 2164
PspXI VCTCGAGB 1 cut(s) 1992
PsuI RGATCY 3 cut(s) 78, 940, 1027
PsyI GACNNNGTC 2 cut(s) 104, 1829
PvuI CGATCG 1 cut(s) 562
RruI TCGCGA 4 cut(s) 816, 965, 1140, 1436
RsaI GTAC 7 cut(s) 446, 598, 645, 672, 806, 1495, 2120
RsaNI GTAC 7 cut(s) 445, 597, 644, 671, 805, 1494, 2119
RseI CAYNNNNRTG 1 cut(s) 983
Rsr2I CGGWCCG 1 cut(s) 1561
RsrII CGGWCCG 1 cut(s) 1561
SaqAI TTAA 3 cut(s) 897, 1347, 1382
SatI GCNGC 7 cut(s) 170, 402, 831, 1022, 1091, 1572, 2089
ScaI AGTACT 1 cut(s) 645
SchI GAGTC 5 cut(s) 680, 1747, 1875, 1995, 2092
ScrFI CCNGG 7 cut(s) 233, 395, 422, 551, 971, 1565, 2168
SduI GDGCHC 1 cut(s) 1189
SfaNI GCATC 6 cut(s) 308, 716, 1005, 1197, 1272, 1493
Sfr274I CTCGAG 1 cut(s) 1992
SinI GGWCC 6 cut(s) 265, 778, 1199, 1309, 1561, 2164
SlaI CTCGAG 1 cut(s) 1992
SmiMI CAYNNNNRTG 1 cut(s) 983
SmlI CTYRAG 4 cut(s) 182, 1016, 1992, 2159
SmoI CTYRAG 4 cut(s) 182, 1016, 1992, 2159
SphI GCATGC 1 cut(s) 169
Sse9I AATT 7 cut(s) 823, 1066, 1383, 1505, 1963, 2023, 2075
SseBI AGGCCT 1 cut(s) 636
SspMI CTAG 4 cut(s) 521, 638, 800, 851
StuI AGGCCT 1 cut(s) 636
StyD4I CCNGG 7 cut(s) 231, 393, 420, 549, 969, 1563, 2166
StyI CCWWGG 2 cut(s) 482, 1352
TaaI ACNGT 2 cut(s) 1623, 1661
TaiI ACGT 6 cut(s) 105, 743, 987, 1499, 1854, 1905
TaqI TCGA 5 cut(s) 562, 903, 1461, 1775, 1993
TaqII GACCGA 1 cut(s) 1454
TasI AATT 7 cut(s) 823, 1066, 1383, 1505, 1963, 2023, 2075
TatI WGTACW 3 cut(s) 643, 670, 804
TauI GCSGC 1 cut(s) 2091
TfiI GAWTC 7 cut(s) 190, 237, 363, 660, 891, 1048, 1393
Tru1I TTAA 3 cut(s) 897, 1347, 1382
Tru9I TTAA 3 cut(s) 897, 1347, 1382
TscAI CASTG 1 cut(s) 599
TseFI GTSAC 1 cut(s) 1082
TseI GCWGC 6 cut(s) 169, 401, 830, 1021, 1090, 1571
Tsp45I GTSAC 1 cut(s) 1082
TspRI CASTG 1 cut(s) 599
Tth111I GACNNNGTC 2 cut(s) 104, 1829
VpaK11BI GGWCC 6 cut(s) 265, 778, 1199, 1309, 1561, 2164
XapI RAATTY 1 cut(s) 823
XbaI TCTAGA 1 cut(s) 799
XceI RCATGY 2 cut(s) 169, 1319
XcmI CCANNNNNNNNNTGG 2 cut(s) 68, 1209
XhoI CTCGAG 1 cut(s) 1992
XspI CTAG 4 cut(s) 521, 638, 800, 851
ZrmI AGTACT 1 cut(s) 645
Zsp2I ATGCAT 1 cut(s) 301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.