Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0000160

Physical Location & Seq

Genomic Coordinates Reverse (-)

14963820 .. 14964167

Gene Structure 348 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g18340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGGGTTACTACTGGCCGAGCATGGTGAAAGACTGCCTGGAACACGCCAAAAGGTGCCAAGCCTGCCAATTCCACGCCAACTTCATACATCAACCGCCTGAACCATTACACCCTACAGTTGCTTCATGGCCATTCGACGCATGGGGATTGGATGTTGTAGGACCAATTATGCCAAAGTCATCTGCAGGAGAAGCTTACATCCTAGCTGCAACAGATTACTTCTCCAAGTGGGCTGAAGCCATACCTGTAAGGGAAGTCAAAAAAGAAACTGTCGTTCGTTTCATCAAGGAGCATATCATCCACCGATATGGTGTGCCTCGCTACATTATCACTGACAACGGAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

116

Amino Acids

13.2

Weight (kDa)

7.77

Isoelectric Point (pI)

30.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
rve	PF00665	44 - 115	4.1e-08	Integrase core domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000160)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g11612 FvH4_2g25851 FvH4_3g22802 FvH4_3g22805 FvH4_3g31361 FvH4_3g31382 FvH4_4g05272 FvH4_4g05273 FvH4_4g14567 FvH4_4g15161 FvH4_5g22540 FvH4_6g13113 FvH4_6g31923 FvH4_6g31924 FvH4_6g33651 FvH4_6g45122 FvH4_7g03662
pyrus_communis	pycom01g04240 pycom01g24010 pycom02g18210 pycom02g19420 pycom05g06510 pycom09g15750 pycom09g18940 pycom12g02580 pycom12g03100 pycom12g08310 pycom13g22710 pycom13g28060 pycom16g18340 pycom16g18350 pycom16g24880 pycom16g26240 pycom461g00260 pycom520g00980 pycom520g01320
rosa_chinensis	RchiOBHm_Chr1g0320731 RchiOBHm_Chr2g0102771 RchiOBHm_Chr3g0462151 RchiOBHm_Chr5g0038141 RchiOBHm_Chr5g0069371 RchiOBHm_Chr7g0239101
rosa_multiflora	Rmu_co8038252.1_g000001 Rmu_co8138412.1_g000001 Rmu_co8331087.1_g000001 Rmu_co8479311.1_g000001 Rmu_sc0000112.1_g000018 Rmu_sc0000346.1_g000012 Rmu_sc0002102.1_g000002 Rmu_sc0003505.1_g000013 Rmu_sc0004249.1_g000007 Rmu_sc0004448.1_g000010 Rmu_sc0004594.1_g000011 Rmu_sc0004915.1_g000010 Rmu_sc0008019.1_g000019 Rmu_sc0008303.1_g000001 Rmu_sc0008355.1_g000005 Rmu_sc0009253.1_g000018 Rmu_sc0010211.1_g000002 Rmu_sc0010252.1_g000009 Rmu_sc0011534.1_g000008 Rmu_sc0014811.1_g000009 Rmu_sc0019475.1_g000001 Rmu_sc0024897.1_g000001 Rmu_sc0024898.1_g000001 Rmu_sc0031791.1_g000001 Rmu_sc0038715.1_g000001
rosa_roxburghii	Rroxscaffold_165G00436940 Rroxscaffold_174G00435270 Rroxscaffold_177G00434330 Rroxscaffold_177G00434340 Rroxscaffold_177G00434350 Rroxscaffold_1G00002160 Rroxscaffold_1G00025260 Rroxscaffold_1G00042950 Rroxscaffold_1G00068010 Rroxscaffold_2G00107530 Rroxscaffold_3G00221190 Rroxscaffold_3G00221520 Rroxscaffold_3G00223200 Rroxscaffold_4G00322230 Rroxscaffold_4G00331810 Rroxscaffold_5G00385150 Rroxscaffold_5G00387510 Rroxscaffold_6G00410520 Rroxscaffold_6G00423360 Rroxscaffold_6G00423370 Rroxscaffold_6G00429210 Rroxscaffold_7G00158300 Rroxscaffold_7G00163480 Rroxscaffold_7G00171410 Rroxscaffold_7G00178940 Rroxscaffold_7G00199480 Rroxscaffold_7G00205630 Rroxscaffold_7G00207440
rosa_rugosa	Rorug01G0056400 Rorug04G0063900 Rorug05G0251400 Rorug07G0221900
rosa_samantha	Rh1DG169400 Rh2AG292900 Rh2DG519200 Rh4DG260600 Rh5AG042600 Rh6BG117500
rosa_wichuraiana	Rw0G001900 Rw0G005150 Rw0G006380 Rw0G015140 Rw0G016320 Rw0G019440 Rw0G019840 Rw0G023740 Rw1G001590 Rw1G002180 Rw1G003560 Rw1G004280 Rw1G006110 Rw1G006680 Rw1G007920 Rw1G008480 Rw1G009120 Rw1G010310 Rw1G014900 Rw1G019650 Rw1G022070 Rw1G022170 Rw1G041570 Rw2G002740 Rw2G005760 Rw2G032370 Rw2G046770 Rw2G050600 Rw2G051420 Rw3G015930 Rw3G016280 Rw3G019580 Rw3G028420 Rw4G003430 Rw4G005350 Rw4G007530 Rw4G008150 Rw4G009580 Rw4G010250 Rw4G015800 Rw4G017000 Rw4G017910 Rw4G018510 Rw4G019700 Rw4G031010 Rw5G012650 Rw5G020140 Rw5G022060 Rw5G034420 Rw5G035560 Rw5G043010 Rw5G046750 Rw5G047340 Rw5G049500 Rw6G001390 Rw6G002210 Rw6G004530 Rw6G004770 Rw6G005100 Rw6G005890 Rw6G011860 Rw6G014680 Rw6G019480 Rw6G028970 Rw6G033800 Rw7G013050 Rw7G014800 Rw7G025760 Rw7G025850 Rw7G026730 Rw7G026870 Rw7G036330 Rw7G036430 Rw7G039320 Rw7G039510 Rw7G039560 Rw7G041370 Rw7G042050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	54
AciI	CCGC	1 cut(s)	95
AcoI	YGGCCR	2 cut(s)	14, 128
AcuI	CTGAAG	1 cut(s)	255
AjnI	CCWGG	1 cut(s)	36
AluBI	AGCT	2 cut(s)	194, 206
AluI	AGCT	2 cut(s)	194, 206
AoxI	GGCC	2 cut(s)	14, 128
ApeKI	GCWGC	1 cut(s)	206
AspS9I	GGNCC	1 cut(s)	161
AsuHPI	GGTGA	1 cut(s)	37
AvaII	GGWCC	1 cut(s)	161
BalI	TGGCCA	1 cut(s)	130
BanI	GGYRCC	1 cut(s)	54
BbvI	GCAGC	1 cut(s)	193
BciT130I	CCWGG	1 cut(s)	38
BfaI	CTAG	1 cut(s)	203
BfmI	CTRYAG	2 cut(s)	114, 183
BisI	GCNGC	1 cut(s)	207
BlsI	GCNGC	1 cut(s)	208
Bme1390I	CCNGG	1 cut(s)	38
Bme18I	GGWCC	1 cut(s)	161
BmgT120I	GGNCC	1 cut(s)	161
BmiI	GGNNCC	1 cut(s)	56
BmrFI	CCNGG	1 cut(s)	38
Bse1I	ACTGG	1 cut(s)	17
BseBI	CCWGG	1 cut(s)	38
BseGI	GGATG	3 cut(s)	157, 198, 297
BseNI	ACTGG	1 cut(s)	17
BseXI	GCAGC	1 cut(s)	193
BshFI	GGCC	2 cut(s)	16, 130
BshNI	GGYRCC	1 cut(s)	54
BsnI	GGCC	2 cut(s)	16, 130
BspACI	CCGC	1 cut(s)	95
BspANI	GGCC	2 cut(s)	16, 130
BspLI	GGNNCC	1 cut(s)	56
BspMAI	CTGCAG	1 cut(s)	187
BspT107I	GGYRCC	1 cut(s)	54
BsrI	ACTGG	1 cut(s)	17
Bst2UI	CCWGG	1 cut(s)	38
Bst4CI	ACNGT	2 cut(s)	118, 271
BstC8I	GCNNGC	1 cut(s)	64
BstF5I	GGATG	3 cut(s)	157, 198, 297
BstMWI	GCNNNNNNNGC	2 cut(s)	63, 191
BstNI	CCWGG	1 cut(s)	38
BstSCI	CCNGG	1 cut(s)	36
BstSFI	CTRYAG	2 cut(s)	114, 183
BstV1I	GCAGC	1 cut(s)	193
BstXI	CCANNNNNNTGG	1 cut(s)	308
BsuRI	GGCC	2 cut(s)	16, 130
BtsCI	GGATG	3 cut(s)	157, 198, 297
BtsIMutI	CAGTG	1 cut(s)	330
Cac8I	GCNNGC	1 cut(s)	64
Cfr13I	GGNCC	1 cut(s)	161
CseI	GACGC	1 cut(s)	146
CviAII	CATG	3 cut(s)	22, 126, 141
CviJI	RGCY	7 cut(s)	16, 62, 130, 194, 206, 233, 239
CviKI_1	RGCY	7 cut(s)	16, 62, 130, 194, 206, 233, 239
EaeI	YGGCCR	2 cut(s)	14, 128
Eco47I	GGWCC	1 cut(s)	161
Eco57I	CTGAAG	1 cut(s)	255
EcoRII	CCWGG	1 cut(s)	36
FaeI	CATG	3 cut(s)	25, 129, 144
FaiI	YATR	8 cut(s)	23, 86, 127, 142, 170, 242, 294, 309
FatI	CATG	3 cut(s)	21, 125, 140
Fnu4HI	GCNGC	1 cut(s)	207
FokI	GGATG	3 cut(s)	164, 185, 284
Fsp4HI	GCNGC	1 cut(s)	207
FspBI	CTAG	1 cut(s)	203
GluI	GCNGC	1 cut(s)	207
HaeIII	GGCC	2 cut(s)	16, 130
HgaI	GACGC	1 cut(s)	146
Hin1II	CATG	3 cut(s)	25, 129, 144
HindIII	AAGCTT	1 cut(s)	192
HphI	GGTGA	1 cut(s)	37
Hpy99I	CGWCG	1 cut(s)	140
HpyCH4III	ACNGT	2 cut(s)	118, 271
HpyCH4V	TGCA	2 cut(s)	185, 209
HpyF10VI	GCNNNNNNNGC	2 cut(s)	63, 191
Hsp92II	CATG	3 cut(s)	25, 129, 144
LmnI	GCTCC	1 cut(s)	289
LpnPI	CCDG	6 cut(s)	23, 50, 76, 111, 171, 258
Lsp1109I	GCAGC	1 cut(s)	193
MaeI	CTAG	1 cut(s)	203
MaeIII	GTNAC	1 cut(s)	5
MlsI	TGGCCA	1 cut(s)	130
MluCI	AATT	2 cut(s)	68, 165
MluNI	TGGCCA	1 cut(s)	130
MnlI	CCTC	1 cut(s)	327
Mox20I	TGGCCA	1 cut(s)	130
MscI	TGGCCA	1 cut(s)	130
MslI	CAYNNNNRTG	1 cut(s)	306
Msp20I	TGGCCA	1 cut(s)	130
MspR9I	CCNGG	1 cut(s)	38
MvaI	CCWGG	1 cut(s)	38
MwoI	GCNNNNNNNGC	2 cut(s)	63, 191
NlaIII	CATG	3 cut(s)	25, 129, 144
NlaIV	GGNNCC	1 cut(s)	56
NmeAIII	GCCGAG	1 cut(s)	42
PkrI	GCNGC	1 cut(s)	208
Psp6I	CCWGG	1 cut(s)	36
PspGI	CCWGG	1 cut(s)	36
PspN4I	GGNNCC	1 cut(s)	56
PspPI	GGNCC	1 cut(s)	161
PstI	CTGCAG	1 cut(s)	187
RseI	CAYNNNNRTG	1 cut(s)	306
SatI	GCNGC	1 cut(s)	207
Sau96I	GGNCC	1 cut(s)	161
ScrFI	CCNGG	1 cut(s)	38
SetI	ASST	4 cut(s)	56, 196, 208, 247
SfcI	CTRYAG	2 cut(s)	114, 183
SinI	GGWCC	1 cut(s)	161
SmiMI	CAYNNNNRTG	1 cut(s)	306
Sse9I	AATT	2 cut(s)	68, 165
SsiI	CCGC	1 cut(s)	95
SspMI	CTAG	1 cut(s)	203
StyD4I	CCNGG	1 cut(s)	36
TaaI	ACNGT	2 cut(s)	118, 271
TaqI	TCGA	1 cut(s)	135
TasI	AATT	2 cut(s)	68, 165
TscAI	CASTG	1 cut(s)	337
TseI	GCWGC	1 cut(s)	206
TspDTI	ATGAA	3 cut(s)	73, 114, 271
TspRI	CASTG	1 cut(s)	337
VpaK11BI	GGWCC	1 cut(s)	161
XcmI	CCANNNNNNNNNTGG	1 cut(s)	138
XspI	CTAG	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.