Rw6G004530

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000160
Physical Location & Seq
Forward (+)
7289913 .. 7291374
1462 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G004530.1

Sequence Viewer

Length: 660 bp
ATGGTGAAATTGGCTAAATTTTTTACCACACTCATAATTTATTGTAATAAACTCATCCAACGGTCGCAACTTGTTAATGATTTCGGCATCCAGTTCATCCACAGCACTCCATATTATGCTCAGTCCAACGGTCAAGCAGAAGCTAGCAACAAGATTATTATTACCCTGTTAAAGAAGATGCTGGTAGAGAACCCTCGACAGTGGCACGATACTTTGTATGAGACACTCTGGGCTTATTGTACGTCCAAGAGGAATCCCACCGTTACGACACCATATGCACTCATGTTTGGTCATGACGCTGTTTTACCCCTGGAAATCAACGTTTATTCCTTACGCGTACAAGAGCAGCATCACTTGATAGGTGAAGATTACGTCCTGGCGATGTGGCAAGAACATGAAGATTTGAGTGAGCAGCGCTTAGCGGCTTTGGATAATTTGGTAATGGAGAAACAGCGTATCGCCCGCGCCTATGATAAGAGGACGCGTAGTCGTAGTTACAAAGAAGGAGACCTTTGCGGGGCTTTTCACCTCAAAGACGTAGATGGCGACATCCATCGCAACCCCATCAATGGGCGTTTTTTGAAGAAATACTACCCTAGTGTTTGGGAGTTCAAGGATCCACCTGATCAACCTTCTGCTCAGACAGAGAGGCAACCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

219

Amino Acids

25.64

Weight (kDa)

7.74

Isoelectric Point (pI)

42.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000160)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11612 FvH4_2g25851 FvH4_3g22802 FvH4_3g22805 FvH4_3g31361 FvH4_3g31382 FvH4_4g05272 FvH4_4g05273 FvH4_4g14567 FvH4_4g15161 FvH4_5g22540 FvH4_6g13113 FvH4_6g31923 FvH4_6g31924 FvH4_6g33651 FvH4_6g45122 FvH4_7g03662
pyrus_communis pycom01g04240 pycom01g24010 pycom02g18210 pycom02g19420 pycom05g06510 pycom09g15750 pycom09g18940 pycom12g02580 pycom12g03100 pycom12g08310 pycom13g22710 pycom13g28060 pycom16g18340 pycom16g18350 pycom16g24880 pycom16g26240 pycom461g00260 pycom520g00980 pycom520g01320
rosa_chinensis RchiOBHm_Chr1g0320731 RchiOBHm_Chr2g0102771 RchiOBHm_Chr3g0462151 RchiOBHm_Chr5g0038141 RchiOBHm_Chr5g0069371 RchiOBHm_Chr7g0239101
rosa_multiflora Rmu_co8038252.1_g000001 Rmu_co8138412.1_g000001 Rmu_co8331087.1_g000001 Rmu_co8479311.1_g000001 Rmu_sc0000112.1_g000018 Rmu_sc0000346.1_g000012 Rmu_sc0002102.1_g000002 Rmu_sc0003505.1_g000013 Rmu_sc0004249.1_g000007 Rmu_sc0004448.1_g000010 Rmu_sc0004594.1_g000011 Rmu_sc0004915.1_g000010 Rmu_sc0008019.1_g000019 Rmu_sc0008303.1_g000001 Rmu_sc0008355.1_g000005 Rmu_sc0009253.1_g000018 Rmu_sc0010211.1_g000002 Rmu_sc0010252.1_g000009 Rmu_sc0011534.1_g000008 Rmu_sc0014811.1_g000009 Rmu_sc0019475.1_g000001 Rmu_sc0024897.1_g000001 Rmu_sc0024898.1_g000001 Rmu_sc0031791.1_g000001 Rmu_sc0038715.1_g000001
rosa_roxburghii Rroxscaffold_165G00436940 Rroxscaffold_174G00435270 Rroxscaffold_177G00434330 Rroxscaffold_177G00434340 Rroxscaffold_177G00434350 Rroxscaffold_1G00002160 Rroxscaffold_1G00025260 Rroxscaffold_1G00042950 Rroxscaffold_1G00068010 Rroxscaffold_2G00107530 Rroxscaffold_3G00221190 Rroxscaffold_3G00221520 Rroxscaffold_3G00223200 Rroxscaffold_4G00322230 Rroxscaffold_4G00331810 Rroxscaffold_5G00385150 Rroxscaffold_5G00387510 Rroxscaffold_6G00410520 Rroxscaffold_6G00423360 Rroxscaffold_6G00423370 Rroxscaffold_6G00429210 Rroxscaffold_7G00158300 Rroxscaffold_7G00163480 Rroxscaffold_7G00171410 Rroxscaffold_7G00178940 Rroxscaffold_7G00199480 Rroxscaffold_7G00205630 Rroxscaffold_7G00207440
rosa_rugosa Rorug01G0056400 Rorug04G0063900 Rorug05G0251400 Rorug07G0221900
rosa_samantha Rh1DG169400 Rh2AG292900 Rh2DG519200 Rh4DG260600 Rh5AG042600 Rh6BG117500
rosa_wichuraiana Rw0G001900 Rw0G005150 Rw0G006380 Rw0G015140 Rw0G016320 Rw0G019440 Rw0G019840 Rw0G023740 Rw1G001590 Rw1G002180 Rw1G003560 Rw1G004280 Rw1G006110 Rw1G006680 Rw1G007920 Rw1G008480 Rw1G009120 Rw1G010310 Rw1G014900 Rw1G019650 Rw1G022070 Rw1G022170 Rw1G041570 Rw2G002740 Rw2G005760 Rw2G032370 Rw2G046770 Rw2G050600 Rw2G051420 Rw3G015930 Rw3G016280 Rw3G019580 Rw3G028420 Rw4G003430 Rw4G005350 Rw4G007530 Rw4G008150 Rw4G009580 Rw4G010250 Rw4G015800 Rw4G017000 Rw4G017910 Rw4G018510 Rw4G019700 Rw4G031010 Rw5G012650 Rw5G020140 Rw5G022060 Rw5G034420 Rw5G035560 Rw5G043010 Rw5G046750 Rw5G047340 Rw5G049500 Rw6G001390 Rw6G002210 Rw6G004530 Rw6G004770 Rw6G005100 Rw6G005890 Rw6G011860 Rw6G014680 Rw6G019480 Rw6G028970 Rw6G033800 Rw7G013050 Rw7G014800 Rw7G025760 Rw7G025850 Rw7G026730 Rw7G026870 Rw7G036330 Rw7G036430 Rw7G039320 Rw7G039510 Rw7G039560 Rw7G041370 Rw7G042050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 336, 465, 484
AciI CCGC 3 cut(s) 422, 463, 516
AclI AACGTT 1 cut(s) 321
AclWI GGATC 2 cut(s) 611, 624
AcsI RAATTY 1 cut(s) 17
AfaI GTAC 2 cut(s) 241, 339
AfeI AGCGCT 1 cut(s) 416
AfiI CCNNNNNNNGG 3 cut(s) 517, 569, 570
AflIII ACRYGT 2 cut(s) 334, 482
AgsI TTSAA 2 cut(s) 583, 613
AhdI GACNNNNNGTC 1 cut(s) 486
AjnI CCWGG 2 cut(s) 309, 375
AluBI AGCT 1 cut(s) 143
AluI AGCT 1 cut(s) 143
Alw26I GTCTC 2 cut(s) 215, 501
AlwI GGATC 2 cut(s) 611, 624
Aor51HI AGCGCT 1 cut(s) 416
ApeKI GCWGC 2 cut(s) 346, 412
ApoI RAATTY 1 cut(s) 17
AspLEI GCGC 2 cut(s) 417, 467
AsuHPI GGTGA 3 cut(s) 16, 374, 518
AsuNHI GCTAGC 1 cut(s) 143
BamHI GGATCC 1 cut(s) 616
BarI GAAGNNNNNNTAC 2 cut(s) 575, 607
BbvI GCAGC 2 cut(s) 358, 424
BccI CCATC 3 cut(s) 536, 561, 572
BciT130I CCWGG 2 cut(s) 311, 377
BclI TGATCA 1 cut(s) 625
BcoDI GTCTC 2 cut(s) 215, 501
BfaI CTAG 2 cut(s) 144, 597
BfoI RGCGCY 1 cut(s) 418
BisI GCNGC 3 cut(s) 347, 413, 423
BlpI GCTNAGC 1 cut(s) 418
BlsI GCNGC 3 cut(s) 348, 414, 424
Bme1390I CCNGG 2 cut(s) 311, 377
BmeRI GACNNNNNGTC 1 cut(s) 486
BmiI GGNNCC 1 cut(s) 618
BmrFI CCNGG 2 cut(s) 311, 377
BmsI GCATC 3 cut(s) 96, 168, 358
BmtI GCTAGC 1 cut(s) 147
Bpu1102I GCTNAGC 1 cut(s) 418
BsaI GGTCTC 1 cut(s) 501
BsaJI CCNNGG 1 cut(s) 309
Bsc4I CCNNNNNNNGG 3 cut(s) 517, 569, 570
Bse1I ACTGG 1 cut(s) 91
BseBI CCWGG 2 cut(s) 311, 377
BseDI CCNNGG 1 cut(s) 309
BseGI GGATG 4 cut(s) 54, 87, 96, 549
BseLI CCNNNNNNNGG 3 cut(s) 517, 569, 570
BseMII CTCAG 2 cut(s) 134, 653
BseNI ACTGG 1 cut(s) 91
BseXI GCAGC 2 cut(s) 358, 424
Bsh1236I CGCG 3 cut(s) 336, 465, 484
Bsh1285I CGRYCG 1 cut(s) 65
BsiEI CGRYCG 1 cut(s) 65
BslI CCNNNNNNNGG 3 cut(s) 517, 569, 570
BsmAI GTCTC 2 cut(s) 215, 501
Bso31I GGTCTC 1 cut(s) 501
Bsp143I GATC 2 cut(s) 616, 625
Bsp1720I GCTNAGC 1 cut(s) 418
BspACI CCGC 3 cut(s) 422, 463, 516
BspCNI CTCAG 2 cut(s) 133, 652
BspFNI CGCG 3 cut(s) 336, 465, 484
BspHI TCATGA 1 cut(s) 292
BspLI GGNNCC 1 cut(s) 618
BspOI GCTAGC 1 cut(s) 147
BspPI GGATC 2 cut(s) 611, 624
BspTNI GGTCTC 1 cut(s) 501
BsrI ACTGG 1 cut(s) 91
BssECI CCNNGG 1 cut(s) 309
BssMI GATC 2 cut(s) 616, 625
Bst2UI CCWGG 2 cut(s) 311, 377
Bst4CI ACNGT 4 cut(s) 63, 131, 201, 262
BstC8I GCNNGC 2 cut(s) 145, 463
BstDEI CTNAG 3 cut(s) 120, 418, 639
BstF5I GGATG 4 cut(s) 54, 87, 96, 549
BstFNI CGCG 3 cut(s) 336, 465, 484
BstH2I RGCGCY 1 cut(s) 418
BstHHI GCGC 2 cut(s) 417, 467
BstKTI GATC 2 cut(s) 619, 628
BstMAI GTCTC 2 cut(s) 215, 501
BstMBI GATC 2 cut(s) 616, 625
BstMCI CGRYCG 1 cut(s) 65
BstNI CCWGG 2 cut(s) 311, 377
BstSCI CCNGG 2 cut(s) 309, 375
BstUI CGCG 3 cut(s) 336, 465, 484
BstV1I GCAGC 2 cut(s) 358, 424
BstX2I RGATCY 1 cut(s) 616
BstYI RGATCY 1 cut(s) 616
BtgZI GCGATG 2 cut(s) 395, 539
BtsCI GGATG 4 cut(s) 54, 87, 96, 549
BtsIMutI CAGTG 1 cut(s) 206
Cac8I GCNNGC 2 cut(s) 145, 463
CciI TCATGA 1 cut(s) 292
CfoI GCGC 2 cut(s) 417, 467
CseI GACGC 2 cut(s) 305, 490
Csp6I GTAC 2 cut(s) 240, 338
CviAII CATG 3 cut(s) 283, 293, 395
CviJI RGCY 5 cut(s) 14, 143, 233, 425, 521
CviKI_1 RGCY 5 cut(s) 14, 143, 233, 425, 521
CviQI GTAC 2 cut(s) 240, 338
DdeI CTNAG 3 cut(s) 120, 418, 639
DpnI GATC 2 cut(s) 618, 627
DpnII GATC 2 cut(s) 616, 625
DriI GACNNNNNGTC 1 cut(s) 486
Eam1105I GACNNNNNGTC 1 cut(s) 486
Eco31I GGTCTC 1 cut(s) 501
Eco47III AGCGCT 1 cut(s) 416
EcoRII CCWGG 2 cut(s) 309, 375
FaeI CATG 3 cut(s) 286, 296, 398
FalI AAGNNNNNCTT 2 cut(s) 495, 527
FatI CATG 3 cut(s) 282, 292, 394
FauI CCCGC 2 cut(s) 470, 509
FauNDI CATATG 1 cut(s) 274
FbaI TGATCA 1 cut(s) 625
Fnu4HI GCNGC 3 cut(s) 347, 413, 423
FokI GGATG 4 cut(s) 41, 74, 83, 536
Fsp4HI GCNGC 3 cut(s) 347, 413, 423
FspBI CTAG 2 cut(s) 144, 597
GlaI GCGC 2 cut(s) 416, 466
GluI GCNGC 3 cut(s) 347, 413, 423
HaeII RGCGCY 1 cut(s) 418
HgaI GACGC 2 cut(s) 305, 490
HhaI GCGC 2 cut(s) 417, 467
Hin1II CATG 3 cut(s) 286, 296, 398
Hin6I GCGC 2 cut(s) 415, 465
HinP1I GCGC 2 cut(s) 415, 465
HinfI GANTC 1 cut(s) 253
HphI GGTGA 3 cut(s) 16, 374, 518
Hpy188I TCNGA 1 cut(s) 642
Hpy188III TCNNGA 1 cut(s) 293
HpyAV CCTTC 2 cut(s) 497, 642
HpyCH4III ACNGT 4 cut(s) 63, 131, 201, 262
HpyCH4IV ACGT 4 cut(s) 242, 321, 372, 537
HpyCH4V TGCA 1 cut(s) 278
HpyF3I CTNAG 3 cut(s) 120, 418, 639
HpySE526I ACGT 4 cut(s) 242, 321, 372, 537
Hsp92II CATG 3 cut(s) 286, 296, 398
HspAI GCGC 2 cut(s) 415, 465
Ksp22I TGATCA 1 cut(s) 625
Kzo9I GATC 2 cut(s) 616, 625
LpnPI CCDG 9 cut(s) 104, 167, 179, 214, 296, 323, 362, 389, 636
Lsp1109I GCAGC 2 cut(s) 358, 424
LweI GCATC 3 cut(s) 96, 168, 358
MaeI CTAG 2 cut(s) 144, 597
MaeII ACGT 4 cut(s) 242, 321, 372, 537
MaeIII GTNAC 2 cut(s) 262, 494
MalI GATC 2 cut(s) 618, 627
MboI GATC 2 cut(s) 616, 625
MboII GAAGA 4 cut(s) 187, 377, 410, 595
MflI RGATCY 1 cut(s) 616
MluCI AATT 4 cut(s) 8, 17, 36, 433
MluI ACGCGT 2 cut(s) 334, 482
MmeI TCCRAC 2 cut(s) 82, 150
MnlI CCTC 5 cut(s) 204, 243, 471, 539, 642
MseI TTAA 2 cut(s) 75, 170
MspR9I CCNGG 2 cut(s) 311, 377
MvaI CCWGG 2 cut(s) 311, 377
MvnI CGCG 3 cut(s) 336, 465, 484
NdeI CATATG 1 cut(s) 274
NdeII GATC 2 cut(s) 616, 625
NheI GCTAGC 1 cut(s) 143
NlaIII CATG 3 cut(s) 286, 296, 398
NlaIV GGNNCC 1 cut(s) 618
PagI TCATGA 1 cut(s) 292
PcsI WCGNNNNNNNCGW 1 cut(s) 543
PfeI GAWTC 1 cut(s) 253
PkrI GCNGC 3 cut(s) 348, 414, 424
Psp1406I AACGTT 1 cut(s) 321
Psp6I CCWGG 2 cut(s) 309, 375
PspGI CCWGG 2 cut(s) 309, 375
PspN4I GGNNCC 1 cut(s) 618
PsuI RGATCY 1 cut(s) 616
RsaI GTAC 2 cut(s) 241, 339
RsaNI GTAC 2 cut(s) 240, 338
SaqAI TTAA 2 cut(s) 75, 170
SatI GCNGC 3 cut(s) 347, 413, 423
Sau3AI GATC 2 cut(s) 616, 625
ScrFI CCNGG 2 cut(s) 311, 377
SfaNI GCATC 3 cut(s) 96, 168, 358
Sse9I AATT 4 cut(s) 8, 17, 36, 433
SsiI CCGC 3 cut(s) 422, 463, 516
SspMI CTAG 2 cut(s) 144, 597
StyD4I CCNGG 2 cut(s) 309, 375
TaaI ACNGT 4 cut(s) 63, 131, 201, 262
TaiI ACGT 4 cut(s) 245, 324, 375, 540
TaqI TCGA 1 cut(s) 196
TasI AATT 4 cut(s) 8, 17, 36, 433
TauI GCSGC 1 cut(s) 425
TfiI GAWTC 1 cut(s) 253
Tru1I TTAA 2 cut(s) 75, 170
Tru9I TTAA 2 cut(s) 75, 170
TscAI CASTG 1 cut(s) 206
TseI GCWGC 2 cut(s) 346, 412
TspDTI ATGAA 2 cut(s) 85, 411
TspRI CASTG 1 cut(s) 206
XapI RAATTY 1 cut(s) 17
XspI CTAG 2 cut(s) 144, 597
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.