Rroxscaffold_165G00436940

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000165
OG0000160
Physical Location & Seq
Forward (+)
32145 .. 49263
17119 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_165G00436940.1

Sequence Viewer

Length: 573 bp
ATGTTCCTAACATCCCTATGCAACCTATTATTAAACCTTGGCCTGCGCGAGGGCCGGGCACTGGACTTGATTGGGATGATCCATCCTCATTCTTCCCTACGGCACAAGTTCATCATCGTCGCTACGGACTATTTCACAAAATGGGTTGAGGCCAAGCCTCGACGGAGGCTTCGGGCGCTACCATTCGCCGGTTTATTTTCCGTAATATTCTCTGCAGGTTTGGTATCCCCGAGGTGCTGGTGTCGGACGGGGGCAGCAGCGTTCATGGGAGGCCCCGTTGAGGAGTTGGTAACTGATTTTGGCATTCAATTCATCCATAGTACCCCATATTATGCTCAATCTAATGGGCGGGCGGAGGCAAGCAACAAGACAATTATCACCTTACTAAAGAAGATGTTGGTCGAGAATCCTCGACGGTGGCATGATACTTTGTACGAGACGCTTTGGGCCTATCGCACTTCTAAACGTAACCCCACCGCCACGACACCGTACGCGCTCATGTTTGGACATGATCTTGTCTTACCATTGGAAATTAATGTTCACTCCTGCGCGTCCAAGAGCAGCACCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

190

Amino Acids

21.44

Weight (kDa)

9.69

Isoelectric Point (pI)

46.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000160)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11612 FvH4_2g25851 FvH4_3g22802 FvH4_3g22805 FvH4_3g31361 FvH4_3g31382 FvH4_4g05272 FvH4_4g05273 FvH4_4g14567 FvH4_4g15161 FvH4_5g22540 FvH4_6g13113 FvH4_6g31923 FvH4_6g31924 FvH4_6g33651 FvH4_6g45122 FvH4_7g03662
pyrus_communis pycom01g04240 pycom01g24010 pycom02g18210 pycom02g19420 pycom05g06510 pycom09g15750 pycom09g18940 pycom12g02580 pycom12g03100 pycom12g08310 pycom13g22710 pycom13g28060 pycom16g18340 pycom16g18350 pycom16g24880 pycom16g26240 pycom461g00260 pycom520g00980 pycom520g01320
rosa_chinensis RchiOBHm_Chr1g0320731 RchiOBHm_Chr2g0102771 RchiOBHm_Chr3g0462151 RchiOBHm_Chr5g0038141 RchiOBHm_Chr5g0069371 RchiOBHm_Chr7g0239101
rosa_multiflora Rmu_co8038252.1_g000001 Rmu_co8138412.1_g000001 Rmu_co8331087.1_g000001 Rmu_co8479311.1_g000001 Rmu_sc0000112.1_g000018 Rmu_sc0000346.1_g000012 Rmu_sc0002102.1_g000002 Rmu_sc0003505.1_g000013 Rmu_sc0004249.1_g000007 Rmu_sc0004448.1_g000010 Rmu_sc0004594.1_g000011 Rmu_sc0004915.1_g000010 Rmu_sc0008019.1_g000019 Rmu_sc0008303.1_g000001 Rmu_sc0008355.1_g000005 Rmu_sc0009253.1_g000018 Rmu_sc0010211.1_g000002 Rmu_sc0010252.1_g000009 Rmu_sc0011534.1_g000008 Rmu_sc0014811.1_g000009 Rmu_sc0019475.1_g000001 Rmu_sc0024897.1_g000001 Rmu_sc0024898.1_g000001 Rmu_sc0031791.1_g000001 Rmu_sc0038715.1_g000001
rosa_roxburghii Rroxscaffold_165G00436940 Rroxscaffold_174G00435270 Rroxscaffold_177G00434330 Rroxscaffold_177G00434340 Rroxscaffold_177G00434350 Rroxscaffold_1G00002160 Rroxscaffold_1G00025260 Rroxscaffold_1G00042950 Rroxscaffold_1G00068010 Rroxscaffold_2G00107530 Rroxscaffold_3G00221190 Rroxscaffold_3G00221520 Rroxscaffold_3G00223200 Rroxscaffold_4G00322230 Rroxscaffold_4G00331810 Rroxscaffold_5G00385150 Rroxscaffold_5G00387510 Rroxscaffold_6G00410520 Rroxscaffold_6G00423360 Rroxscaffold_6G00423370 Rroxscaffold_6G00429210 Rroxscaffold_7G00158300 Rroxscaffold_7G00163480 Rroxscaffold_7G00171410 Rroxscaffold_7G00178940 Rroxscaffold_7G00199480 Rroxscaffold_7G00205630 Rroxscaffold_7G00207440
rosa_rugosa Rorug01G0056400 Rorug04G0063900 Rorug05G0251400 Rorug07G0221900
rosa_samantha Rh1DG169400 Rh2AG292900 Rh2DG519200 Rh4DG260600 Rh5AG042600 Rh6BG117500
rosa_wichuraiana Rw0G001900 Rw0G005150 Rw0G006380 Rw0G015140 Rw0G016320 Rw0G019440 Rw0G019840 Rw0G023740 Rw1G001590 Rw1G002180 Rw1G003560 Rw1G004280 Rw1G006110 Rw1G006680 Rw1G007920 Rw1G008480 Rw1G009120 Rw1G010310 Rw1G014900 Rw1G019650 Rw1G022070 Rw1G022170 Rw1G041570 Rw2G002740 Rw2G005760 Rw2G032370 Rw2G046770 Rw2G050600 Rw2G051420 Rw3G015930 Rw3G016280 Rw3G019580 Rw3G028420 Rw4G003430 Rw4G005350 Rw4G007530 Rw4G008150 Rw4G009580 Rw4G010250 Rw4G015800 Rw4G017000 Rw4G017910 Rw4G018510 Rw4G019700 Rw4G031010 Rw5G012650 Rw5G020140 Rw5G022060 Rw5G034420 Rw5G035560 Rw5G043010 Rw5G046750 Rw5G047340 Rw5G049500 Rw6G001390 Rw6G002210 Rw6G004530 Rw6G004770 Rw6G005100 Rw6G005890 Rw6G011860 Rw6G014680 Rw6G019480 Rw6G028970 Rw6G033800 Rw7G013050 Rw7G014800 Rw7G025760 Rw7G025850 Rw7G026730 Rw7G026870 Rw7G036330 Rw7G036430 Rw7G039320 Rw7G039510 Rw7G039560 Rw7G041370 Rw7G042050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 206
AccII CGCG 3 cut(s) 48, 494, 551
AciI CCGC 3 cut(s) 349, 353, 477
AclWI GGATC 1 cut(s) 73
AfaI GTAC 3 cut(s) 322, 434, 491
AfiI CCNNNNNNNGG 4 cut(s) 49, 61, 188, 280
AgsI TTSAA 1 cut(s) 308
Alw26I GTCTC 1 cut(s) 431
AlwI GGATC 1 cut(s) 73
Ama87I CYCGRG 1 cut(s) 229
AoxI GGCC 5 cut(s) 40, 52, 150, 271, 447
ApeKI GCWGC 3 cut(s) 254, 257, 561
ArsI GACNNNNNNTTYG 2 cut(s) 153, 185
AseI ATTAAT 1 cut(s) 534
AspLEI GCGC 4 cut(s) 48, 178, 496, 551
AspS9I GGNCC 3 cut(s) 52, 272, 447
AsuC2I CCSGG 1 cut(s) 56
AsuHPI GGTGA 1 cut(s) 370
AvaI CYCGRG 1 cut(s) 229
BaeGI GKGCMC 1 cut(s) 61
BbvI GCAGC 2 cut(s) 266, 269
BccI CCATC 1 cut(s) 90
BceAI ACGGC 1 cut(s) 116
BciVI GTATCC 1 cut(s) 235
BcnI CCSGG 1 cut(s) 56
BcoDI GTCTC 1 cut(s) 431
BfmI CTRYAG 1 cut(s) 213
BfoI RGCGCY 1 cut(s) 179
BfuAI ACCTGC 1 cut(s) 206
BfuI GTATCC 1 cut(s) 235
BisI GCNGC 3 cut(s) 255, 258, 562
BlsI GCNGC 3 cut(s) 256, 259, 563
Bme1390I CCNGG 1 cut(s) 56
BmeT110I CYCGRG 1 cut(s) 229
BmgT120I GGNCC 3 cut(s) 52, 272, 447
BmiI GGNNCC 1 cut(s) 274
BmrFI CCNGG 1 cut(s) 56
BpuMI CCSGG 1 cut(s) 56
BsaJI CCNNGG 2 cut(s) 37, 230
BsaXI ACNNNNNCTCC 2 cut(s) 261, 291
Bsc4I CCNNNNNNNGG 4 cut(s) 49, 61, 188, 280
Bse118I RCCGGY 1 cut(s) 188
Bse1I ACTGG 1 cut(s) 66
BseDI CCNNGG 2 cut(s) 37, 230
BseGI GGATG 4 cut(s) 11, 81, 82, 312
BseLI CCNNNNNNNGG 4 cut(s) 49, 61, 188, 280
BseNI ACTGG 1 cut(s) 66
BseRI GAGGAG 1 cut(s) 296
BseSI GKGCMC 1 cut(s) 61
BseXI GCAGC 2 cut(s) 266, 269
Bsh1236I CGCG 3 cut(s) 48, 494, 551
BshFI GGCC 5 cut(s) 42, 54, 152, 273, 449
BsiHKCI CYCGRG 1 cut(s) 229
BsiSI CCGG 2 cut(s) 55, 189
BsiWI CGTACG 1 cut(s) 489
BslI CCNNNNNNNGG 4 cut(s) 49, 61, 188, 280
BsmAI GTCTC 1 cut(s) 431
BsmBI CGTCTC 1 cut(s) 431
BsmI GAATGC 1 cut(s) 303
BsnI GGCC 5 cut(s) 42, 54, 152, 273, 449
BsoBI CYCGRG 1 cut(s) 229
Bsp1286I GDGCHC 1 cut(s) 61
Bsp143I GATC 2 cut(s) 78, 511
BspACI CCGC 3 cut(s) 349, 353, 477
BspANI GGCC 5 cut(s) 42, 54, 152, 273, 449
BspFNI CGCG 3 cut(s) 48, 494, 551
BspLI GGNNCC 1 cut(s) 274
BspMAI CTGCAG 1 cut(s) 217
BspMI ACCTGC 1 cut(s) 206
BspPI GGATC 1 cut(s) 73
BsrFI RCCGGY 1 cut(s) 188
BsrI ACTGG 1 cut(s) 66
BssAI RCCGGY 1 cut(s) 188
BssECI CCNNGG 2 cut(s) 37, 230
BssMI GATC 2 cut(s) 78, 511
BssT1I CCWWGG 1 cut(s) 37
Bst4CI ACNGT 2 cut(s) 417, 489
BstC8I GCNNGC 3 cut(s) 44, 351, 361
BstENI CCTNNNNNAGG 1 cut(s) 47
BstF5I GGATG 4 cut(s) 11, 81, 82, 312
BstFNI CGCG 3 cut(s) 48, 494, 551
BstH2I RGCGCY 1 cut(s) 179
BstHHI GCGC 4 cut(s) 48, 178, 496, 551
BstKTI GATC 2 cut(s) 81, 514
BstMAI GTCTC 1 cut(s) 431
BstMBI GATC 2 cut(s) 78, 511
BstMWI GCNNNNNNNGC 1 cut(s) 175
BstSCI CCNGG 1 cut(s) 54
BstSFI CTRYAG 1 cut(s) 213
BstSLI GKGCMC 1 cut(s) 61
BstUI CGCG 3 cut(s) 48, 494, 551
BstV1I GCAGC 2 cut(s) 266, 269
BsuI GTATCC 1 cut(s) 235
BsuRI GGCC 5 cut(s) 42, 54, 152, 273, 449
BtsCI GGATG 4 cut(s) 11, 81, 82, 312
BtsIMutI CAGTG 1 cut(s) 59
BveI ACCTGC 1 cut(s) 206
Cac8I GCNNGC 3 cut(s) 44, 351, 361
CfoI GCGC 4 cut(s) 48, 178, 496, 551
Cfr10I RCCGGY 1 cut(s) 188
Cfr13I GGNCC 3 cut(s) 52, 272, 447
CseI GACGC 2 cut(s) 448, 540
Csp6I GTAC 3 cut(s) 321, 433, 490
CviAII CATG 4 cut(s) 265, 422, 499, 509
CviJI RGCY 7 cut(s) 42, 54, 152, 157, 169, 273, 449
CviKI_1 RGCY 7 cut(s) 42, 54, 152, 157, 169, 273, 449
CviQI GTAC 3 cut(s) 321, 433, 490
DpnI GATC 2 cut(s) 80, 513
DpnII GATC 2 cut(s) 78, 511
EciI GGCGGA 1 cut(s) 368
Eco130I CCWWGG 1 cut(s) 37
Eco88I CYCGRG 1 cut(s) 229
EcoNI CCTNNNNNAGG 1 cut(s) 47
EcoO109I RGGNCCY 1 cut(s) 272
EcoT14I CCWWGG 1 cut(s) 37
ErhI CCWWGG 1 cut(s) 37
Esp3I CGTCTC 1 cut(s) 431
FaeI CATG 4 cut(s) 268, 425, 502, 512
FaiI YATR 8 cut(s) 19, 266, 318, 328, 333, 423, 500, 510
FatI CATG 4 cut(s) 264, 421, 498, 508
FauI CCCGC 1 cut(s) 342
Fnu4HI GCNGC 3 cut(s) 255, 258, 562
FokI GGATG 3 cut(s) 69, 88, 299
Fsp4HI GCNGC 3 cut(s) 255, 258, 562
GlaI GCGC 4 cut(s) 47, 177, 495, 550
GluI GCNGC 3 cut(s) 255, 258, 562
HaeII RGCGCY 1 cut(s) 179
HaeIII GGCC 5 cut(s) 42, 54, 152, 273, 449
HapII CCGG 2 cut(s) 55, 189
HgaI GACGC 2 cut(s) 448, 540
HhaI GCGC 4 cut(s) 48, 178, 496, 551
Hin1II CATG 4 cut(s) 268, 425, 502, 512
Hin6I GCGC 4 cut(s) 46, 176, 494, 549
HinP1I GCGC 4 cut(s) 46, 176, 494, 549
HinfI GANTC 1 cut(s) 406
HpaII CCGG 2 cut(s) 55, 189
HphI GGTGA 1 cut(s) 370
Hpy166II GTNNAC 1 cut(s) 541
Hpy188I TCNGA 1 cut(s) 246
Hpy188III TCNNGA 1 cut(s) 403
Hpy8I GTNNAC 1 cut(s) 541
Hpy99I CGWCG 3 cut(s) 122, 165, 417
HpyCH4III ACNGT 2 cut(s) 417, 489
HpyCH4IV ACGT 1 cut(s) 466
HpyCH4V TGCA 2 cut(s) 21, 215
HpyF10VI GCNNNNNNNGC 1 cut(s) 175
HpySE526I ACGT 1 cut(s) 466
Hsp92II CATG 4 cut(s) 268, 425, 502, 512
HspAI GCGC 4 cut(s) 46, 176, 494, 549
Kzo9I GATC 2 cut(s) 78, 511
LpnPI CCDG 7 cut(s) 47, 56, 68, 201, 202, 223, 559
Lsp1109I GCAGC 2 cut(s) 266, 269
MaeII ACGT 1 cut(s) 466
MaeIII GTNAC 2 cut(s) 289, 467
MalI GATC 2 cut(s) 80, 513
MboI GATC 2 cut(s) 78, 511
MboII GAAGA 2 cut(s) 84, 403
MhlI GDGCHC 1 cut(s) 61
MluCI AATT 3 cut(s) 308, 372, 531
MmeI TCCRAC 1 cut(s) 224
MseI TTAA 2 cut(s) 32, 534
MslI CAYNNNNRTG 1 cut(s) 16
MspI CCGG 2 cut(s) 55, 189
MspR9I CCNGG 1 cut(s) 56
Mva1269I GAATGC 1 cut(s) 303
MvnI CGCG 3 cut(s) 48, 494, 551
MwoI GCNNNNNNNGC 1 cut(s) 175
NciI CCSGG 1 cut(s) 56
NdeII GATC 2 cut(s) 78, 511
NlaIII CATG 4 cut(s) 268, 425, 502, 512
NlaIV GGNNCC 1 cut(s) 274
PctI GAATGC 1 cut(s) 303
PfeI GAWTC 1 cut(s) 406
Pfl23II CGTACG 1 cut(s) 489
PkrI GCNGC 3 cut(s) 256, 259, 563
PshBI ATTAAT 1 cut(s) 534
PspLI CGTACG 1 cut(s) 489
PspN4I GGNNCC 1 cut(s) 274
PspPI GGNCC 3 cut(s) 52, 272, 447
PstI CTGCAG 1 cut(s) 217
RsaI GTAC 3 cut(s) 322, 434, 491
RsaNI GTAC 3 cut(s) 321, 433, 490
RseI CAYNNNNRTG 1 cut(s) 16
SaqAI TTAA 2 cut(s) 32, 534
SatI GCNGC 3 cut(s) 255, 258, 562
Sau3AI GATC 2 cut(s) 78, 511
Sau96I GGNCC 3 cut(s) 52, 272, 447
ScrFI CCNGG 1 cut(s) 56
SduI GDGCHC 1 cut(s) 61
SetI ASST 6 cut(s) 27, 39, 220, 236, 383, 469
SfcI CTRYAG 1 cut(s) 213
SmiMI CAYNNNNRTG 1 cut(s) 16
Sse9I AATT 3 cut(s) 308, 372, 531
SsiI CCGC 3 cut(s) 349, 353, 477
SspI AATATT 1 cut(s) 207
StyD4I CCNGG 1 cut(s) 54
StyI CCWWGG 1 cut(s) 37
TaaI ACNGT 2 cut(s) 417, 489
TaiI ACGT 1 cut(s) 469
TaqI TCGA 3 cut(s) 160, 402, 412
TasI AATT 3 cut(s) 308, 372, 531
TfiI GAWTC 1 cut(s) 406
Tru1I TTAA 2 cut(s) 32, 534
Tru9I TTAA 2 cut(s) 32, 534
TscAI CASTG 1 cut(s) 66
TseI GCWGC 3 cut(s) 254, 257, 561
TspDTI ATGAA 3 cut(s) 100, 253, 301
TspGWI ACGGA 3 cut(s) 140, 178, 190
TspRI CASTG 1 cut(s) 66
VspI ATTAAT 1 cut(s) 534
XagI CCTNNNNNAGG 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.