Rmu_sc0005728.1_g000010

Alcohol dehydrogenase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005728.1
OG0000253
Physical Location & Seq
Forward (+)
42855 .. 43858
1004 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005728.1_g000010.1.cds

Sequence Viewer

Length: 1004 bp
atggtctttcgggataacaagtctgtaatctatcgtccccatgcttttctcgaaactgagggctgttttttgttagacgatgagactctgtcagatgagagatttgagtttctttttggcatacgctctgcatgccttcctgtgagagttgatggtcagctcattttagagccgtattatcccaacagatttgcacgtcaatttggctatgatcagagtgttccctctaaccgcctctcttttagtgtgtcgaagaggaagcagtgttttgttgaagatttagcgagagcccaatctattctttacaggaggaatacaacagctcagttttatatcccgagatcgacacgtgaaggagaatgcacttggtggtactgcaagtggtggttgaaagcttgtataccttatttggggctttcagtatcgaagactttcaagactttcactcaaaaatctcctgagcccgatcatcgtgtctttatagtgaacaaacttgctgaagtttctgcggatttgagaaaagaagttcagatttcatctttacagaggccagagagtcagaatcttcaaacgagccttagcaaggttgggccagatggtgataaccttatcagcagtgagcatattaaccatgataagatggcgacccttaaagggacaatatccagagaggtgagtcttcctaagacaggctctggcactcaaaaggcactcaagaggaaacctgacagtttacatccttctaatccttcagcagttgttcaaaatgtccaacaaacagaaagtggatttagctctaatactgatccttctagagcggaaattgtagctcgagcttctaaaaggcaacctgtagagcgtcagagcaatgggcgtcctcaaagggctcaaactactattgatcaaggtgttaagaaaacagctgtgcctcagaaagcctgtatttctagcaaaaatccctcaaccaagtgcatgccaactgtagaggatgtggggaactttct

Protein Analysis

335

Amino Acids

37.89

Weight (kDa)

9.4

Isoelectric Point (pI)

55.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000253)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28912 FvH4_3g31370 FvH4_3g31371 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_6g28991 FvH4_7g16740 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610
malus_domestica MD10G1126100.v1.1 MD10G1312700.v1.1
rosa_chinensis RchiOBHm_Chr6g0276621
rosa_laevigata RLG00000023327 RLG00000023328
rosa_multiflora Rmu_co8195922.1_g000001 Rmu_co8303105.1_g000001 Rmu_co8385689.1_g000001 Rmu_sc0000385.1_g000010 Rmu_sc0000594.1_g000002 Rmu_sc0000857.1_g000010 Rmu_sc0001016.1_g000053 Rmu_sc0001468.1_g000028 Rmu_sc0001548.1_g000047 Rmu_sc0001548.1_g000048 Rmu_sc0002281.1_g000026 Rmu_sc0002281.1_g000027 Rmu_sc0002281.1_g000028 Rmu_sc0002478.1_g000001 Rmu_sc0002513.1_g000014 Rmu_sc0002662.1_g000017 Rmu_sc0003936.1_g000040 Rmu_sc0004084.1_g000047 Rmu_sc0005529.1_g000005 Rmu_sc0005529.1_g000006 Rmu_sc0005728.1_g000010 Rmu_sc0005747.1_g000017 Rmu_sc0005747.1_g000018 Rmu_sc0006385.1_g000001 Rmu_sc0006550.1_g000019 Rmu_sc0006803.1_g000033 Rmu_sc0007102.1_g000011 Rmu_sc0011018.1_g000001 Rmu_sc0011452.1_g000014 Rmu_sc0011805.1_g000001 Rmu_sc0011805.1_g000002 Rmu_sc0012566.1_g000001 Rmu_sc0013807.1_g000007 Rmu_sc0015817.1_g000001 Rmu_sc0015930.1_g000011 Rmu_sc0018873.1_g000003 Rmu_sc0020929.1_g000001
rosa_roxburghii Rroxscaffold_2G00081310 Rroxscaffold_2G00111790 Rroxscaffold_5G00349530 Rroxscaffold_5G00356270 Rroxscaffold_5G00356280 Rroxscaffold_5G00356290
rosa_rugosa Rorug01G0056400 Rorug01G0056500 Rorug02G0247000 Rorug03G0271700 Rorug04G0157900 Rorug05G0221700 Rorug05G0251400 Rorug05G0251400 Rorug06G0087300 Rorug07G0221900 Rorug07G0221900
rosa_samantha Rh1AG073200 Rh1AG073300 Rh1AG124600 Rh1AG124700 Rh1BG091900 Rh1CG031600 Rh1CG072100 Rh1CG072200 Rh1CG118800 Rh1CG276600 Rh1CG276700 Rh1DG077300 Rh2BG192000 Rh2BG330900 Rh2BG331000 Rh2BG517700 Rh2BG517800 Rh2CG188300 Rh2DG120800 Rh2DG323900 Rh2DG420700 Rh2DG433000 Rh2DG529400 Rh2DG529500 Rh3DG358100 Rh3DG358200 Rh4BG129700 Rh4BG129800 Rh4BG129900 Rh4BG166400 Rh4CG032000 Rh4DG024800 Rh4DG039500 Rh5AG223400 Rh5BG244500 Rh5BG244600 Rh5BG244700 Rh5CG363000 Rh5CG366900 Rh6AG117500 Rh6AG188600 Rh6AG188700 Rh6AG188800 Rh6BG111400 Rh6BG140800 Rh6BG178800 Rh6DG124100 Rh6DG210000 Rh7AG441200 Rh7BG296800 Rh7BG413900 Rh7BG414000 Rh7BG452400 Rh7DG234000 Rh7DG234100
rosa_wichuraiana Rw2G019410 Rw5G042140 Rw7G019590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 818
AccI GTMKAC 1 cut(s) 400
AciI CCGC 3 cut(s) 232, 509, 818
AclWI GGATC 1 cut(s) 800
AcuI CTGAAG 2 cut(s) 519, 735
AcvI CACGTG 1 cut(s) 350
AcyI GRCGYC 1 cut(s) 874
AdeI CACNNNGTG 1 cut(s) 369
AfaI GTAC 1 cut(s) 374
AfiI CCNNNNNNNGG 4 cut(s) 410, 583, 654, 689
AflIII ACRYGT 1 cut(s) 347
AgsI TTSAA 5 cut(s) 275, 391, 436, 569, 764
AjiI CACGTC 1 cut(s) 197
AluBI AGCT 7 cut(s) 160, 323, 395, 795, 830, 836, 923
AluI AGCT 7 cut(s) 160, 323, 395, 795, 830, 836, 923
Alw26I GTCTC 1 cut(s) 77
AlwI GGATC 1 cut(s) 800
AlwNI CAGNNNCTG 1 cut(s) 695
Ama87I CYCGRG 2 cut(s) 337, 831
AoxI GGCC 2 cut(s) 548, 590
Asp700I GAANNNNTTC 1 cut(s) 431
AspS9I GGNCC 1 cut(s) 590
AsuHPI GGTGA 2 cut(s) 611, 685
AvaI CYCGRG 2 cut(s) 337, 831
BanII GRGCYC 3 cut(s) 292, 465, 889
BbrPI CACGTG 1 cut(s) 350
BbsI GAAGAC 2 cut(s) 434, 671
BccI CCATC 3 cut(s) 146, 590, 634
BceAI ACGGC 1 cut(s) 157
BclI TGATCA 2 cut(s) 211, 901
BcoDI GTCTC 1 cut(s) 77
BfaI CTAG 2 cut(s) 813, 948
BfmI CTRYAG 2 cut(s) 852, 981
BmeT110I CYCGRG 2 cut(s) 337, 831
BmgBI CACGTC 1 cut(s) 197
BmgT120I GGNCC 1 cut(s) 590
BpiI GAAGAC 2 cut(s) 434, 671
Bpu10I CCTNAGC 2 cut(s) 459, 578
BpuEI CTTGAG 1 cut(s) 698
BsaAI YACGTR 1 cut(s) 350
BsaHI GRCGYC 1 cut(s) 874
Bsc4I CCNNNNNNNGG 4 cut(s) 410, 583, 654, 689
Bse3DI GCAATG 1 cut(s) 874
BseGI GGATG 2 cut(s) 736, 994
BseLI CCNNNNNNNGG 4 cut(s) 410, 583, 654, 689
BseMI GCAATG 1 cut(s) 874
BseMII CTCAG 4 cut(s) 48, 338, 450, 944
BshFI GGCC 2 cut(s) 550, 592
BsiHKCI CYCGRG 2 cut(s) 337, 831
BslFI GGGAC 2 cut(s) 21, 670
BslI CCNNNNNNNGG 4 cut(s) 410, 583, 654, 689
BsmAI GTCTC 1 cut(s) 77
BsmFI GGGAC 2 cut(s) 21, 670
BsmI GAATGC 1 cut(s) 365
BsnI GGCC 2 cut(s) 550, 592
BsoBI CYCGRG 2 cut(s) 337, 831
Bsp1286I GDGCHC 3 cut(s) 292, 465, 889
Bsp143I GATC 5 cut(s) 211, 341, 466, 805, 901
BspACI CCGC 3 cut(s) 232, 509, 818
BspANI GGCC 2 cut(s) 550, 592
BspCNI CTCAG 4 cut(s) 49, 337, 451, 943
BspPI GGATC 1 cut(s) 800
BsrBI CCGCTC 1 cut(s) 818
BsrDI GCAATG 1 cut(s) 874
BssMI GATC 5 cut(s) 211, 341, 466, 805, 901
BssNAI GTATAC 1 cut(s) 401
BssNI GRCGYC 1 cut(s) 874
Bst1107I GTATAC 1 cut(s) 401
Bst4CI ACNGT 2 cut(s) 731, 982
Bst6I CTCTTC 1 cut(s) 248
BstACI GRCGYC 1 cut(s) 874
BstBAI YACGTR 1 cut(s) 350
BstC8I GCNNGC 2 cut(s) 133, 974
BstDEI CTNAG 6 cut(s) 57, 324, 459, 578, 684, 930
BstENI CCTNNNNNAGG 2 cut(s) 581, 687
BstF5I GGATG 2 cut(s) 736, 994
BstKTI GATC 5 cut(s) 214, 344, 469, 808, 904
BstMAI GTCTC 1 cut(s) 77
BstMBI GATC 5 cut(s) 211, 341, 466, 805, 901
BstMWI GCNNNNNNNGC 1 cut(s) 132
BstNSI RCATGY 2 cut(s) 135, 976
BstSFI CTRYAG 2 cut(s) 852, 981
BstV2I GAAGAC 2 cut(s) 434, 671
BstZ17I GTATAC 1 cut(s) 401
BsuRI GGCC 2 cut(s) 550, 592
BtrI CACGTC 1 cut(s) 197
BtsCI GGATG 2 cut(s) 736, 994
BtsI GCAGTG 2 cut(s) 269, 622
BtsIMutI CAGTG 2 cut(s) 269, 622
Cac8I GCNNGC 2 cut(s) 133, 974
CaiI CAGNNNCTG 1 cut(s) 695
Cfr13I GGNCC 1 cut(s) 590
CseI GACGC 2 cut(s) 848, 863
Csp6I GTAC 1 cut(s) 373
CviAII CATG 4 cut(s) 41, 132, 632, 973
CviQI GTAC 1 cut(s) 373
DdeI CTNAG 6 cut(s) 57, 324, 459, 578, 684, 930
DpnI GATC 5 cut(s) 213, 343, 468, 807, 903
DpnII GATC 5 cut(s) 211, 341, 466, 805, 901
DraIII CACNNNGTG 1 cut(s) 369
Eam1104I CTCTTC 1 cut(s) 248
EarI CTCTTC 1 cut(s) 248
Eco24I GRGCYC 3 cut(s) 292, 465, 889
Eco57I CTGAAG 2 cut(s) 519, 735
Eco72I CACGTG 1 cut(s) 350
Eco88I CYCGRG 2 cut(s) 337, 831
EcoNI CCTNNNNNAGG 2 cut(s) 581, 687
EcoT38I GRGCYC 3 cut(s) 292, 465, 889
FaeI CATG 4 cut(s) 44, 135, 635, 976
FaqI GGGAC 2 cut(s) 21, 670
FatI CATG 4 cut(s) 40, 131, 631, 972
FbaI TGATCA 2 cut(s) 211, 901
FblI GTMKAC 1 cut(s) 400
FokI GGATG 1 cut(s) 723
FriOI GRGCYC 3 cut(s) 292, 465, 889
FspBI CTAG 2 cut(s) 813, 948
HaeIII GGCC 2 cut(s) 550, 592
HgaI GACGC 2 cut(s) 848, 863
Hin1I GRCGYC 1 cut(s) 874
Hin1II CATG 4 cut(s) 44, 135, 635, 976
HindIII AAGCTT 1 cut(s) 393
HinfI GANTC 4 cut(s) 85, 556, 562, 676
HphI GGTGA 2 cut(s) 611, 685
Hpy166II GTNNAC 3 cut(s) 401, 487, 734
Hpy188I TCNGA 6 cut(s) 94, 216, 531, 561, 864, 933
Hpy188III TCNNGA 8 cut(s) 11, 50, 337, 436, 458, 666, 715, 813
Hpy8I GTNNAC 3 cut(s) 401, 487, 734
HpyAV CCTTC 5 cut(s) 146, 347, 750, 759, 819
HpyCH4III ACNGT 2 cut(s) 731, 982
HpyCH4IV ACGT 2 cut(s) 196, 349
HpyCH4V TGCA 5 cut(s) 131, 194, 363, 378, 972
HpyF10VI GCNNNNNNNGC 1 cut(s) 132
HpyF3I CTNAG 6 cut(s) 57, 324, 459, 578, 684, 930
HpySE526I ACGT 2 cut(s) 196, 349
Hsp92I GRCGYC 1 cut(s) 874
Hsp92II CATG 4 cut(s) 44, 135, 635, 976
Ksp22I TGATCA 2 cut(s) 211, 901
Kzo9I GATC 5 cut(s) 211, 341, 466, 805, 901
MaeI CTAG 2 cut(s) 813, 948
MaeII ACGT 2 cut(s) 196, 349
MalI GATC 5 cut(s) 213, 343, 468, 807, 903
MbiI CCGCTC 1 cut(s) 818
MboI GATC 5 cut(s) 211, 341, 466, 805, 901
MboII GAAGA 5 cut(s) 265, 287, 439, 557, 671
MhlI GDGCHC 3 cut(s) 292, 465, 889
MluCI AATT 2 cut(s) 200, 822
MlyI GAGTC 3 cut(s) 79, 565, 685
MmeI TCCRAC 1 cut(s) 796
MroXI GAANNNNTTC 1 cut(s) 431
MseI TTAA 3 cut(s) 627, 651, 912
MspA1I CMGCKG 1 cut(s) 923
Mva1269I GAATGC 1 cut(s) 365
MwoI GCNNNNNNNGC 1 cut(s) 132
NdeII GATC 5 cut(s) 211, 341, 466, 805, 901
NlaIII CATG 4 cut(s) 44, 135, 635, 976
NspI RCATGY 2 cut(s) 135, 976
PaeI GCATGC 2 cut(s) 135, 976
PaeR7I CTCGAG 1 cut(s) 831
PctI GAATGC 1 cut(s) 365
PdmI GAANNNNTTC 1 cut(s) 431
PfeI GAWTC 1 cut(s) 562
PflFI GACNNNGTC 1 cut(s) 88
PleI GAGTC 3 cut(s) 79, 564, 684
PmaCI CACGTG 1 cut(s) 350
PmlI CACGTG 1 cut(s) 350
PpsI GAGTC 3 cut(s) 79, 564, 684
Ppu21I YACGTR 1 cut(s) 350
PspCI CACGTG 1 cut(s) 350
PspPI GGNCC 1 cut(s) 590
PspXI VCTCGAGB 1 cut(s) 831
PstNI CAGNNNCTG 1 cut(s) 695
PsyI GACNNNGTC 1 cut(s) 88
PvuII CAGCTG 1 cut(s) 923
RsaI GTAC 1 cut(s) 374
RsaNI GTAC 1 cut(s) 373
SaqAI TTAA 3 cut(s) 627, 651, 912
Sau3AI GATC 5 cut(s) 211, 341, 466, 805, 901
Sau96I GGNCC 1 cut(s) 590
SchI GAGTC 3 cut(s) 79, 565, 685
SduI GDGCHC 3 cut(s) 292, 465, 889
SfcI CTRYAG 2 cut(s) 852, 981
Sfr274I CTCGAG 1 cut(s) 831
SlaI CTCGAG 1 cut(s) 831
SmlI CTYRAG 2 cut(s) 713, 831
SmoI CTYRAG 2 cut(s) 713, 831
SphI GCATGC 2 cut(s) 135, 976
Sse9I AATT 2 cut(s) 200, 822
SsiI CCGC 3 cut(s) 232, 509, 818
SspMI CTAG 2 cut(s) 813, 948
TaaI ACNGT 2 cut(s) 731, 982
TaiI ACGT 2 cut(s) 199, 352
TaqI TCGA 5 cut(s) 51, 251, 344, 425, 832
TasI AATT 2 cut(s) 200, 822
TfiI GAWTC 1 cut(s) 562
Tru1I TTAA 3 cut(s) 627, 651, 912
Tru9I TTAA 3 cut(s) 627, 651, 912
TscAI CASTG 2 cut(s) 269, 622
TspDTI ATGAA 1 cut(s) 525
TspRI CASTG 2 cut(s) 269, 622
Tth111I GACNNNGTC 1 cut(s) 88
XagI CCTNNNNNAGG 2 cut(s) 581, 687
XbaI TCTAGA 1 cut(s) 812
XceI RCATGY 2 cut(s) 135, 976
XhoI CTCGAG 1 cut(s) 831
XmiI GTMKAC 1 cut(s) 400
XmnI GAANNNNTTC 1 cut(s) 431
XspI CTAG 2 cut(s) 813, 948
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.