Rmu_sc0001548.1_g000047

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001548.1
OG0000253
Physical Location & Seq
Reverse (-)
188409 .. 190616
2208 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001548.1_g000047.1.cds

Sequence Viewer

Length: 2112 bp
atggggcatccatatgaagaatttatccctgtcaacagtgagctgcattgcagtgagcgctatccatctacagttgctgagcttttgggcattcactctcagttatgtttttttcacaaaagggatttcatttattgggatgagtgggttgattatttttaccacgggaagatattgtacgtggcttatggtgaggttgggaatagaaaggcttatccacatcaaggaagattcacacggcggcaacccgatttaactatttcgaatgaggaggccctggctgtatttttggtatattggcttagcaggtttgtcttaccctctaatcattccaatctctgtcccgacacattttatatggcttctttgatggcacaaggcatcagggtttctttagcaccttcagtacttggctatatttaccatggtcttggcctagctgccactgatccagaagggcctggaaattctaatgtttgctttcccattcattatgttattggttgtctaggagaacacttccccttcttatacagagcccgagctgatagtgacttcccaactaaccatccgtatttagcaagatatgcgggtattgaggccgttgatttggatatttcatctactagatgtgtttttagaactgatatttctgtgatttaccatcctagttcatttattgaacaaagcggttgctttttggctgacgatagtggcctgtcaagtgatcatttcgagttgttggtttgtatgctctcttcattgttgccggtgagagtgggacatgatcttttcttggaaccatattatccgaacagatttgctcgccaatttggctttgatcaaggggttccctcaaacaaactcagttttggccttgcaagaaggcgtcagtactgcattgaggatttagccaaggcccaacaggtactcctccaaacagatattggggctcgcttttacattccgcgttccacttataatgggacatgtacctggacatattgtaagtggtggatgacagcttgtgcaccatacctaggcaggtctgtgtctaatgtttacttgacattgaccaaacgtcgacttgagaaaagagatgatatatttgtgatcaaatccatcagagagttctcttccaatttgtggaaagaggtcttattttcagaagaggacataagtaggtcagccgcttatgacaagaatccccaacctgctaaaaggacgaacagaacaccatttcaaaatagtggggcagcaaagactctcaagtgtgctcaatttgagagatacgctggttatgaagatggtagaattgacgatattacttttcctcaggatgattttgttcaggacagagatgttgccccctgtgatggtgacaaaatcactactccaaggttgaaatcagtaatatcacgagttacagaatcaaatgattcagaagtggagacacagctaaaggacttggaacaaaagtcaagcagaccacttgaatcagagccagaaaatttggaaccaaaatcaatttgctcaacgtctaaagaatgtgatgtaggggtactagtagaaaccccagtgctggaaacaaataattctgaaccaaactcgccgcaatcagagcctaggttgaaagattccaaaatcctagctgaagatgtccatgactctgttagtggagccactgaacctatcgattccaacacctccgagcatattgatgaaggtattaactcactcactgaggctacatcaactccgcatgagatttttggcgaaggattgaataaactccggatgaattttattttcgccgagatacaacagatccttgacaaattgaactcgtctcaaccatttggggaaattcttgattgccaggacgaagtttcaaaaacacttgatgtgttggagttgatattcaaaaccctcggatctggtaaggacatatttgagtggtttactgcaaaaatttatctaacctttgacttggcagctcagctttctcaagacaggagcattattgagaaagattatggattggacattgagaacatcaatgagttaattcaaaaccatttaaatttgtcaagctgccaagaaagtccttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

703

Amino Acids

79.8

Weight (kDa)

4.99

Isoelectric Point (pI)

52.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000253)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28912 FvH4_3g31370 FvH4_3g31371 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_6g28991 FvH4_7g16740 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610
malus_domestica MD10G1126100.v1.1 MD10G1312700.v1.1
rosa_chinensis RchiOBHm_Chr6g0276621
rosa_laevigata RLG00000023327 RLG00000023328
rosa_multiflora Rmu_co8195922.1_g000001 Rmu_co8303105.1_g000001 Rmu_co8385689.1_g000001 Rmu_sc0000385.1_g000010 Rmu_sc0000594.1_g000002 Rmu_sc0000857.1_g000010 Rmu_sc0001016.1_g000053 Rmu_sc0001468.1_g000028 Rmu_sc0001548.1_g000047 Rmu_sc0001548.1_g000048 Rmu_sc0002281.1_g000026 Rmu_sc0002281.1_g000027 Rmu_sc0002281.1_g000028 Rmu_sc0002478.1_g000001 Rmu_sc0002513.1_g000014 Rmu_sc0002662.1_g000017 Rmu_sc0003936.1_g000040 Rmu_sc0004084.1_g000047 Rmu_sc0005529.1_g000005 Rmu_sc0005529.1_g000006 Rmu_sc0005728.1_g000010 Rmu_sc0005747.1_g000017 Rmu_sc0005747.1_g000018 Rmu_sc0006385.1_g000001 Rmu_sc0006550.1_g000019 Rmu_sc0006803.1_g000033 Rmu_sc0007102.1_g000011 Rmu_sc0011018.1_g000001 Rmu_sc0011452.1_g000014 Rmu_sc0011805.1_g000001 Rmu_sc0011805.1_g000002 Rmu_sc0012566.1_g000001 Rmu_sc0013807.1_g000007 Rmu_sc0015817.1_g000001 Rmu_sc0015930.1_g000011 Rmu_sc0018873.1_g000003 Rmu_sc0020929.1_g000001
rosa_roxburghii Rroxscaffold_2G00081310 Rroxscaffold_2G00111790 Rroxscaffold_5G00349530 Rroxscaffold_5G00356270 Rroxscaffold_5G00356280 Rroxscaffold_5G00356290
rosa_rugosa Rorug01G0056400 Rorug01G0056500 Rorug02G0247000 Rorug03G0271700 Rorug04G0157900 Rorug05G0221700 Rorug05G0251400 Rorug05G0251400 Rorug06G0087300 Rorug07G0221900 Rorug07G0221900
rosa_samantha Rh1AG073200 Rh1AG073300 Rh1AG124600 Rh1AG124700 Rh1BG091900 Rh1CG031600 Rh1CG072100 Rh1CG072200 Rh1CG118800 Rh1CG276600 Rh1CG276700 Rh1DG077300 Rh2BG192000 Rh2BG330900 Rh2BG331000 Rh2BG517700 Rh2BG517800 Rh2CG188300 Rh2DG120800 Rh2DG323900 Rh2DG420700 Rh2DG433000 Rh2DG529400 Rh2DG529500 Rh3DG358100 Rh3DG358200 Rh4BG129700 Rh4BG129800 Rh4BG129900 Rh4BG166400 Rh4CG032000 Rh4DG024800 Rh4DG039500 Rh5AG223400 Rh5BG244500 Rh5BG244600 Rh5BG244700 Rh5CG363000 Rh5CG366900 Rh6AG117500 Rh6AG188600 Rh6AG188700 Rh6AG188800 Rh6BG111400 Rh6BG140800 Rh6BG178800 Rh6DG124100 Rh6DG210000 Rh7AG441200 Rh7BG296800 Rh7BG413900 Rh7BG414000 Rh7BG452400 Rh7DG234000 Rh7DG234100
rosa_wichuraiana Rw2G019410 Rw5G042140 Rw7G019590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 981
Acc36I ACCTGC 3 cut(s) 297, 1035, 1222
AccB7I CCANNNNNTGG 1 cut(s) 1146
AccI GTMKAC 1 cut(s) 1084
AccII CGCG 1 cut(s) 970
AccIII TCCGGA 1 cut(s) 1794
AciI CCGC 7 cut(s) 241, 590, 690, 968, 1191, 1613, 1760
AclWI GGATC 3 cut(s) 443, 1822, 1942
AcsI RAATTY 7 cut(s) 20, 466, 1510, 1801, 1866, 1971, 2083
AcuI CTGAAG 2 cut(s) 387, 1674
AcyI GRCGYC 1 cut(s) 889
AfaI GTAC 6 cut(s) 179, 408, 896, 930, 994, 1563
AfeI AGCGCT 1 cut(s) 59
AfiI CCNNNNNNNGG 5 cut(s) 224, 1040, 1146, 1376, 1582
AflIII ACRYGT 1 cut(s) 989
AhdI GACNNNNNGTC 1 cut(s) 1080
AhlI ACTAGT 1 cut(s) 1564
AjnI CCWGG 4 cut(s) 276, 460, 995, 1878
Alw21I GWGCWC 2 cut(s) 1033, 1279
Alw26I GTCTC 2 cut(s) 1445, 1854
Alw44I GTGCAC 1 cut(s) 1029
AlwI GGATC 3 cut(s) 443, 1822, 1942
AlwNI CAGNNNCTG 1 cut(s) 77
Ama87I CYCGRG 1 cut(s) 540
Aor13HI TCCGGA 1 cut(s) 1794
Aor51HI AGCGCT 1 cut(s) 59
AoxI GGCC 7 cut(s) 273, 433, 458, 600, 715, 874, 918
ApaLI GTGCAC 1 cut(s) 1029
ApeKI GCWGC 5 cut(s) 43, 440, 1256, 1994, 2094
ApoI RAATTY 7 cut(s) 20, 466, 1510, 1801, 1866, 1971, 2083
AspA2I CCTAGG 2 cut(s) 1039, 1625
AspLEI GCGC 1 cut(s) 60
AspS9I GGNCC 3 cut(s) 274, 458, 919
AsuHPI GGTGA 3 cut(s) 203, 784, 1391
AsuII TTCGAA 1 cut(s) 263
AvaI CYCGRG 1 cut(s) 540
AvrII CCTAGG 2 cut(s) 1039, 1625
AxyI CCTNAGG 1 cut(s) 1335
BaeGI GKGCMC 1 cut(s) 1033
BaeI ACNNNNGTAYC 2 cut(s) 1282, 1315
BanII GRGCYC 2 cut(s) 541, 955
BarI GAAGNNNNNNTAC 4 cut(s) 161, 193, 742, 774
BauI CACGAG 1 cut(s) 1419
Bbv12I GWGCWC 2 cut(s) 1033, 1279
BbvI GCAGC 5 cut(s) 30, 427, 1268, 2006, 2081
BccI CCATC 7 cut(s) 73, 364, 576, 672, 1130, 1301, 1370
BceAI ACGGC 2 cut(s) 254, 587
BciT130I CCWGG 4 cut(s) 278, 462, 997, 1880
BclI TGATCA 3 cut(s) 727, 841, 1113
BcoDI GTCTC 2 cut(s) 1445, 1854
BcuI ACTAGT 1 cut(s) 1564
BfaI CTAG 8 cut(s) 437, 509, 627, 669, 1040, 1565, 1626, 1649
BfmI CTRYAG 1 cut(s) 69
BfoI RGCGCY 1 cut(s) 61
BfuAI ACCTGC 3 cut(s) 297, 1035, 1222
BglI GCCNNNNNGGC 1 cut(s) 834
BisI GCNGC 8 cut(s) 44, 242, 441, 1191, 1257, 1613, 1995, 2095
BlnI CCTAGG 2 cut(s) 1039, 1625
BlpI GCTNAGC 3 cut(s) 78, 302, 1998
BlsI GCNGC 8 cut(s) 45, 243, 442, 1192, 1258, 1614, 1996, 2096
BmcAI AGTACT 2 cut(s) 408, 896
Bme1390I CCNGG 4 cut(s) 278, 462, 997, 1880
BmeRI GACNNNNNGTC 1 cut(s) 1080
BmeT110I CYCGRG 1 cut(s) 540
BmgT120I GGNCC 3 cut(s) 274, 458, 919
BmiI GGNNCC 4 cut(s) 801, 852, 1518, 1681
BmrFI CCNGG 4 cut(s) 278, 462, 997, 1880
BmrI ACTGGG 1 cut(s) 1571
BmsI GCATC 2 cut(s) 16, 390
BmuI ACTGGG 1 cut(s) 1571
Bpu1102I GCTNAGC 3 cut(s) 78, 302, 1998
Bpu14I TTCGAA 1 cut(s) 263
BpuEI CTTGAG 3 cut(s) 1109, 1253, 1992
Bsa29I ATCGAT 1 cut(s) 1695
BsaAI YACGTR 1 cut(s) 181
BsaHI GRCGYC 1 cut(s) 889
BsaJI CCNNGG 8 cut(s) 163, 276, 424, 915, 1039, 1397, 1625, 1930
BsaWI WCCGGW 1 cut(s) 1794
BsaXI ACNNNNNCTCC 4 cut(s) 915, 945, 1741, 1771
Bsc4I CCNNNNNNNGG 5 cut(s) 224, 1040, 1146, 1376, 1582
Bse118I RCCGGY 1 cut(s) 769
Bse1I ACTGG 1 cut(s) 1577
Bse21I CCTNAGG 1 cut(s) 1335
Bse3DI GCAATG 1 cut(s) 46
BseAI TCCGGA 1 cut(s) 1794
BseBI CCWGG 4 cut(s) 278, 462, 997, 1880
BseCI ATCGAT 1 cut(s) 1695
BseDI CCNNGG 8 cut(s) 163, 276, 424, 915, 1039, 1397, 1625, 1930
BseGI GGATG 7 cut(s) 7, 145, 568, 664, 1023, 1345, 1803
BseLI CCNNNNNNNGG 5 cut(s) 224, 1040, 1146, 1376, 1582
BseMI GCAATG 1 cut(s) 46
BseMII CTCAG 6 cut(s) 69, 113, 880, 1349, 1734, 2012
BseNI ACTGG 1 cut(s) 1577
BseRI GAGGAG 2 cut(s) 284, 923
BseSI GKGCMC 1 cut(s) 1033
BseXI GCAGC 5 cut(s) 30, 427, 1268, 2006, 2081
Bsh1236I CGCG 1 cut(s) 970
BshFI GGCC 7 cut(s) 275, 435, 460, 602, 717, 876, 920
BshVI ATCGAT 1 cut(s) 1695
BsiHKAI GWGCWC 2 cut(s) 1033, 1279
BsiHKCI CYCGRG 1 cut(s) 540
BsiSI CCGG 2 cut(s) 770, 1795
BslFI GGGAC 3 cut(s) 327, 795, 1000
BslI CCNNNNNNNGG 5 cut(s) 224, 1040, 1146, 1376, 1582
BsmAI GTCTC 2 cut(s) 1445, 1854
BsmBI CGTCTC 1 cut(s) 1854
BsmFI GGGAC 3 cut(s) 327, 795, 1000
BsmI GAATGC 1 cut(s) 90
BsnI GGCC 7 cut(s) 275, 435, 460, 602, 717, 876, 920
BsoBI CYCGRG 1 cut(s) 540
Bsp119I TTCGAA 1 cut(s) 263
Bsp1286I GDGCHC 4 cut(s) 541, 955, 1033, 1279
Bsp13I TCCGGA 1 cut(s) 1794
Bsp143I GATC 7 cut(s) 448, 727, 787, 841, 1113, 1827, 1934
Bsp1720I GCTNAGC 3 cut(s) 78, 302, 1998
Bsp19I CCATGG 1 cut(s) 424
BspACI CCGC 7 cut(s) 241, 590, 690, 968, 1191, 1613, 1760
BspANI GGCC 7 cut(s) 275, 435, 460, 602, 717, 876, 920
BspCNI CTCAG 6 cut(s) 70, 112, 879, 1348, 1735, 2011
BspDI ATCGAT 1 cut(s) 1695
BspEI TCCGGA 1 cut(s) 1794
BspFNI CGCG 1 cut(s) 970
BspLI GGNNCC 4 cut(s) 801, 852, 1518, 1681
BspMI ACCTGC 3 cut(s) 297, 1035, 1222
BspPI GGATC 3 cut(s) 443, 1822, 1942
BspT104I TTCGAA 1 cut(s) 263
BsrDI GCAATG 1 cut(s) 46
BsrFI RCCGGY 1 cut(s) 769
BsrI ACTGG 1 cut(s) 1577
BssAI RCCGGY 1 cut(s) 769
BssECI CCNNGG 8 cut(s) 163, 276, 424, 915, 1039, 1397, 1625, 1930
BssMI GATC 7 cut(s) 448, 727, 787, 841, 1113, 1827, 1934
BssNI GRCGYC 1 cut(s) 889
BssSI CACGAG 1 cut(s) 1419
BssT1I CCWWGG 5 cut(s) 424, 915, 1039, 1397, 1625
Bst2BI CACGAG 1 cut(s) 1419
Bst2UI CCWGG 4 cut(s) 278, 462, 997, 1880
Bst4CI ACNGT 2 cut(s) 38, 73
Bst6I CTCTTC 3 cut(s) 763, 1141, 1164
BstACI GRCGYC 1 cut(s) 889
BstAPI GCANNNNNTGC 1 cut(s) 587
BstBAI YACGTR 1 cut(s) 181
BstBI TTCGAA 1 cut(s) 263
BstC8I GCNNGC 2 cut(s) 826, 955
BstDEI CTNAG 7 cut(s) 78, 99, 302, 866, 1335, 1743, 1998
BstDSI CCRYGG 2 cut(s) 163, 424
BstF5I GGATG 7 cut(s) 7, 145, 568, 664, 1023, 1345, 1803
BstFNI CGCG 1 cut(s) 970
BstH2I RGCGCY 1 cut(s) 61
BstHHI GCGC 1 cut(s) 60
BstKTI GATC 7 cut(s) 451, 730, 790, 844, 1116, 1830, 1937
BstMAI GTCTC 2 cut(s) 1445, 1854
BstMBI GATC 7 cut(s) 448, 727, 787, 841, 1113, 1827, 1934
BstMWI GCNNNNNNNGC 4 cut(s) 57, 587, 834, 1621
BstNI CCWGG 4 cut(s) 278, 462, 997, 1880
BstNSI RCATGY 1 cut(s) 993
BstSCI CCNGG 4 cut(s) 276, 460, 995, 1878
BstSFI CTRYAG 1 cut(s) 69
BstSLI GKGCMC 1 cut(s) 1033
BstUI CGCG 1 cut(s) 970
BstV1I GCAGC 5 cut(s) 30, 427, 1268, 2006, 2081
BstX2I RGATCY 2 cut(s) 1827, 1934
BstXI CCANNNNNNTGG 1 cut(s) 431
BstYI RGATCY 2 cut(s) 1827, 1934
Bsu15I ATCGAT 1 cut(s) 1695
Bsu36I CCTNAGG 1 cut(s) 1335
BsuRI GGCC 7 cut(s) 275, 435, 460, 602, 717, 876, 920
BsuTUI ATCGAT 1 cut(s) 1695
BtgI CCRYGG 2 cut(s) 163, 424
BtsCI GGATG 7 cut(s) 7, 145, 568, 664, 1023, 1345, 1803
BtsI GCAGTG 1 cut(s) 58
BtsIMutI CAGTG 6 cut(s) 43, 58, 444, 1584, 1683, 1740
BveI ACCTGC 3 cut(s) 297, 1035, 1222
Cac8I GCNNGC 2 cut(s) 826, 955
CaiI CAGNNNCTG 1 cut(s) 77
CfoI GCGC 1 cut(s) 60
Cfr10I RCCGGY 1 cut(s) 769
Cfr13I GGNCC 3 cut(s) 274, 458, 919
ClaI ATCGAT 1 cut(s) 1695
CseI GACGC 1 cut(s) 878
Csp6I GTAC 6 cut(s) 178, 407, 895, 929, 993, 1562
CviAII CATG 5 cut(s) 425, 785, 990, 1664, 1763
CviQI GTAC 6 cut(s) 178, 407, 895, 929, 993, 1562
DdeI CTNAG 7 cut(s) 78, 99, 302, 866, 1335, 1743, 1998
DpnI GATC 7 cut(s) 450, 729, 789, 843, 1115, 1829, 1936
DpnII GATC 7 cut(s) 448, 727, 787, 841, 1113, 1827, 1934
DraI TTTAAA 1 cut(s) 2082
DriI GACNNNNNGTC 1 cut(s) 1080
Eam1104I CTCTTC 3 cut(s) 763, 1141, 1164
Eam1105I GACNNNNNGTC 1 cut(s) 1080
EarI CTCTTC 3 cut(s) 763, 1141, 1164
Eco130I CCWWGG 5 cut(s) 424, 915, 1039, 1397, 1625
Eco24I GRGCYC 2 cut(s) 541, 955
Eco47III AGCGCT 1 cut(s) 59
Eco57I CTGAAG 2 cut(s) 387, 1674
Eco81I CCTNAGG 1 cut(s) 1335
Eco88I CYCGRG 1 cut(s) 540
EcoO109I RGGNCCY 2 cut(s) 274, 458
EcoRII CCWGG 4 cut(s) 276, 460, 995, 1878
EcoT14I CCWWGG 5 cut(s) 424, 915, 1039, 1397, 1625
EcoT38I GRGCYC 2 cut(s) 541, 955
ErhI CCWWGG 5 cut(s) 424, 915, 1039, 1397, 1625
Esp3I CGTCTC 1 cut(s) 1854
FaeI CATG 5 cut(s) 428, 788, 993, 1667, 1766
FaqI GGGAC 3 cut(s) 327, 795, 1000
FatI CATG 5 cut(s) 424, 784, 989, 1663, 1762
FauI CCCGC 1 cut(s) 583
FauNDI CATATG 1 cut(s) 13
FbaI TGATCA 3 cut(s) 727, 841, 1113
FblI GTMKAC 1 cut(s) 1084
Fnu4HI GCNGC 8 cut(s) 44, 242, 441, 1191, 1257, 1613, 1995, 2095
FokI GGATG 6 cut(s) 152, 555, 651, 1030, 1352, 1810
FriOI GRGCYC 2 cut(s) 541, 955
Fsp4HI GCNGC 8 cut(s) 44, 242, 441, 1191, 1257, 1613, 1995, 2095
FspBI CTAG 8 cut(s) 437, 509, 627, 669, 1040, 1565, 1626, 1649
GlaI GCGC 1 cut(s) 59
GluI GCNGC 8 cut(s) 44, 242, 441, 1191, 1257, 1613, 1995, 2095
HaeII RGCGCY 1 cut(s) 61
HaeIII GGCC 7 cut(s) 275, 435, 460, 602, 717, 876, 920
HapII CCGG 2 cut(s) 770, 1795
HgaI GACGC 1 cut(s) 878
HhaI GCGC 1 cut(s) 60
Hin1I GRCGYC 1 cut(s) 889
Hin1II CATG 5 cut(s) 428, 788, 993, 1667, 1766
Hin6I GCGC 1 cut(s) 58
HinP1I GCGC 1 cut(s) 58
HincII GTYRAC 2 cut(s) 34, 1085
HindII GTYRAC 2 cut(s) 34, 1085
HinfI GANTC 9 cut(s) 231, 1204, 1264, 1430, 1439, 1496, 1637, 1667, 1697
HpaII CCGG 2 cut(s) 770, 1795
HphI GGTGA 3 cut(s) 203, 784, 1391
Hpy166II GTNNAC 5 cut(s) 34, 1031, 1063, 1085, 1962
Hpy188I TCNGA 9 cut(s) 813, 1127, 1168, 1444, 1501, 1600, 1621, 1711, 1934
Hpy188III TCNNGA 8 cut(s) 344, 452, 1337, 1352, 1419, 1795, 1871, 2009
Hpy8I GTNNAC 5 cut(s) 34, 1031, 1063, 1085, 1962
Hpy99I CGWCG 1 cut(s) 1086
HpyAV CCTTC 6 cut(s) 411, 449, 535, 879, 1718, 1772
HpyCH4III ACNGT 2 cut(s) 38, 73
HpyCH4IV ACGT 3 cut(s) 180, 1081, 1538
HpyCH4V TGCA 6 cut(s) 46, 51, 881, 900, 1031, 1967
HpyF10VI GCNNNNNNNGC 4 cut(s) 57, 587, 834, 1621
HpyF3I CTNAG 7 cut(s) 78, 99, 302, 866, 1335, 1743, 1998
HpySE526I ACGT 3 cut(s) 180, 1081, 1538
Hsp92I GRCGYC 1 cut(s) 889
Hsp92II CATG 5 cut(s) 428, 788, 993, 1667, 1766
HspAI GCGC 1 cut(s) 58
Kpn2I TCCGGA 1 cut(s) 1794
Ksp22I TGATCA 3 cut(s) 727, 841, 1113
Kzo9I GATC 7 cut(s) 448, 727, 787, 841, 1113, 1827, 1934
LmnI GCTCC 2 cut(s) 1679, 2016
Lsp1109I GCAGC 5 cut(s) 30, 427, 1268, 2006, 2081
LweI GCATC 2 cut(s) 16, 390
MaeI CTAG 8 cut(s) 437, 509, 627, 669, 1040, 1565, 1626, 1649
MaeII ACGT 3 cut(s) 180, 1081, 1538
MaeIII GTNAC 3 cut(s) 551, 1379, 1423
MalI GATC 7 cut(s) 450, 729, 789, 843, 1115, 1829, 1936
MboI GATC 7 cut(s) 448, 727, 787, 841, 1113, 1827, 1934
MboII GAAGA 8 cut(s) 29, 181, 240, 750, 1128, 1181, 1316, 1667
MflI RGATCY 2 cut(s) 1827, 1934
MhlI GDGCHC 4 cut(s) 541, 955, 1033, 1279
MlyI GAGTC 2 cut(s) 1258, 1661
MmeI TCCRAC 2 cut(s) 1725, 1890
MroI TCCGGA 1 cut(s) 1794
MseI TTAA 4 cut(s) 254, 1731, 2066, 2081
MslI CAYNNNNRTG 3 cut(s) 12, 51, 1719
MspI CCGG 2 cut(s) 770, 1795
MspR9I CCNGG 4 cut(s) 278, 462, 997, 1880
Mva1269I GAATGC 1 cut(s) 90
MvaI CCWGG 4 cut(s) 278, 462, 997, 1880
MvnI CGCG 1 cut(s) 970
MwoI GCNNNNNNNGC 4 cut(s) 57, 587, 834, 1621
NcoI CCATGG 1 cut(s) 424
NdeI CATATG 1 cut(s) 13
NdeII GATC 7 cut(s) 448, 727, 787, 841, 1113, 1827, 1934
NlaIII CATG 5 cut(s) 428, 788, 993, 1667, 1766
NlaIV GGNNCC 4 cut(s) 801, 852, 1518, 1681
NmeAIII GCCGAG 1 cut(s) 1840
NmuCI GTSAC 2 cut(s) 551, 1379
NspI RCATGY 1 cut(s) 993
NspV TTCGAA 1 cut(s) 263
PciI ACATGT 1 cut(s) 989
PctI GAATGC 1 cut(s) 90
PfeI GAWTC 7 cut(s) 231, 1204, 1430, 1439, 1496, 1637, 1697
PflMI CCANNNNNTGG 1 cut(s) 1146
PkrI GCNGC 8 cut(s) 45, 243, 442, 1192, 1258, 1614, 1996, 2096
PleI GAGTC 2 cut(s) 1258, 1661
PpsI GAGTC 2 cut(s) 1258, 1661
Ppu21I YACGTR 1 cut(s) 181
PscI ACATGT 1 cut(s) 989
PsiI TTATAA 1 cut(s) 981
Psp6I CCWGG 4 cut(s) 276, 460, 995, 1878
PspGI CCWGG 4 cut(s) 276, 460, 995, 1878
PspN4I GGNNCC 4 cut(s) 801, 852, 1518, 1681
PspPI GGNCC 3 cut(s) 274, 458, 919
PstNI CAGNNNCTG 1 cut(s) 77
PsuI RGATCY 2 cut(s) 1827, 1934
RsaI GTAC 6 cut(s) 179, 408, 896, 930, 994, 1563
RsaNI GTAC 6 cut(s) 178, 407, 895, 929, 993, 1562
RseI CAYNNNNRTG 3 cut(s) 12, 51, 1719
SalI GTCGAC 1 cut(s) 1083
SaqAI TTAA 4 cut(s) 254, 1731, 2066, 2081
SatI GCNGC 8 cut(s) 44, 242, 441, 1191, 1257, 1613, 1995, 2095
Sau3AI GATC 7 cut(s) 448, 727, 787, 841, 1113, 1827, 1934
Sau96I GGNCC 3 cut(s) 274, 458, 919
ScaI AGTACT 2 cut(s) 408, 896
SchI GAGTC 2 cut(s) 1258, 1661
ScrFI CCNGG 4 cut(s) 278, 462, 997, 1880
SduI GDGCHC 4 cut(s) 541, 955, 1033, 1279
SfaNI GCATC 2 cut(s) 16, 390
SfcI CTRYAG 1 cut(s) 69
SfuI TTCGAA 1 cut(s) 263
SmiI ATTTAAAT 1 cut(s) 2082
SmiMI CAYNNNNRTG 3 cut(s) 12, 51, 1719
SmlI CTYRAG 3 cut(s) 1088, 1268, 2007
SmoI CTYRAG 3 cut(s) 1088, 1268, 2007
SpeI ACTAGT 1 cut(s) 1564
SsiI CCGC 7 cut(s) 241, 590, 690, 968, 1191, 1613, 1760
SspMI CTAG 8 cut(s) 437, 509, 627, 669, 1040, 1565, 1626, 1649
StyD4I CCNGG 4 cut(s) 276, 460, 995, 1878
StyI CCWWGG 5 cut(s) 424, 915, 1039, 1397, 1625
SwaI ATTTAAAT 1 cut(s) 2082
TaaI ACNGT 2 cut(s) 38, 73
TaiI ACGT 3 cut(s) 183, 1084, 1541
TaqI TCGA 4 cut(s) 263, 735, 1084, 1695
TatI WGTACW 2 cut(s) 406, 894
TauI GCSGC 3 cut(s) 244, 1193, 1615
TfiI GAWTC 7 cut(s) 231, 1204, 1430, 1439, 1496, 1637, 1697
Tru1I TTAA 4 cut(s) 254, 1731, 2066, 2081
Tru9I TTAA 4 cut(s) 254, 1731, 2066, 2081
TscAI CASTG 6 cut(s) 43, 58, 451, 1584, 1690, 1747
TseFI GTSAC 2 cut(s) 551, 1379
TseI GCWGC 5 cut(s) 43, 440, 1256, 1994, 2094
Tsp45I GTSAC 2 cut(s) 551, 1379
TspDTI ATGAA 9 cut(s) 30, 118, 479, 609, 663, 750, 1317, 1737, 1814
TspGWI ACGGA 1 cut(s) 561
TspRI CASTG 6 cut(s) 43, 58, 451, 1584, 1690, 1747
Van91I CCANNNNNTGG 1 cut(s) 1146
VneI GTGCAC 1 cut(s) 1029
XapI RAATTY 7 cut(s) 20, 466, 1510, 1801, 1866, 1971, 2083
XceI RCATGY 1 cut(s) 993
XcmI CCANNNNNNNNNTGG 1 cut(s) 944
XmaJI CCTAGG 2 cut(s) 1039, 1625
XmiI GTMKAC 1 cut(s) 1084
XspI CTAG 8 cut(s) 437, 509, 627, 669, 1040, 1565, 1626, 1649
ZrmI AGTACT 2 cut(s) 408, 896
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.