Rh6DG124100

Alcohol dehydrogenase-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
Physical Location & Seq
Reverse (-)
17457584 .. 17458105
522 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG124100.1

Sequence Viewer

Length: 522 bp
ATGGGTACTGATCTTTGGCTGGAACCATACTACCCAAATAGGTTTGCACGGCAGTTTGGTTTTGACCGGGGAGTTCCATCAAACAAGTTATTATTTGCTGTTGAGAAAAGAAGACAGTGTTGCATTGAAGATTTAGCAAAAGCGCAACATATACTCCTTAGAGCTAATACCAGTGCCCGTTTTTACATCCCACATTCTACTTATAATGGAACTTGCACATGGATGTATTGTAGATGGTGGATGAGGGCATGTGCTCCATATTTGGGCCGATCTGTGTCTGCTGTTTATTTGACCCTAAAGAAGCAACCTTTGGAGAAAAGAAGTAATGTCTTTGTGATAAAATCTTTGAGAGAAGTCTCTTATAGTTTGCGGAGAAAGGTTTTGTTGACAGATATTGAGGAAGCGGATTCAACCACCCACTTTAGGAAATCTTCCTCTACAAGAGACAATAAGAGGAAGAGGGATTGTACCAGGTCTGATAATTCAGGGGGAAGAAACCTCAAACAAGCCCATAAAGATTAG

Protein Analysis

173

Amino Acids

20.29

Weight (kDa)

9.99

Isoelectric Point (pI)

75.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 7 - 81 7.1e-08 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000253)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28912 FvH4_3g31370 FvH4_3g31371 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_6g28991 FvH4_7g16740 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610
malus_domestica MD10G1126100.v1.1 MD10G1312700.v1.1
rosa_chinensis RchiOBHm_Chr6g0276621
rosa_laevigata RLG00000023327 RLG00000023328
rosa_multiflora Rmu_co8195922.1_g000001 Rmu_co8303105.1_g000001 Rmu_co8385689.1_g000001 Rmu_sc0000385.1_g000010 Rmu_sc0000594.1_g000002 Rmu_sc0000857.1_g000010 Rmu_sc0001016.1_g000053 Rmu_sc0001468.1_g000028 Rmu_sc0001548.1_g000047 Rmu_sc0001548.1_g000048 Rmu_sc0002281.1_g000026 Rmu_sc0002281.1_g000027 Rmu_sc0002281.1_g000028 Rmu_sc0002478.1_g000001 Rmu_sc0002513.1_g000014 Rmu_sc0002662.1_g000017 Rmu_sc0003936.1_g000040 Rmu_sc0004084.1_g000047 Rmu_sc0005529.1_g000005 Rmu_sc0005529.1_g000006 Rmu_sc0005728.1_g000010 Rmu_sc0005747.1_g000017 Rmu_sc0005747.1_g000018 Rmu_sc0006385.1_g000001 Rmu_sc0006550.1_g000019 Rmu_sc0006803.1_g000033 Rmu_sc0007102.1_g000011 Rmu_sc0011018.1_g000001 Rmu_sc0011452.1_g000014 Rmu_sc0011805.1_g000001 Rmu_sc0011805.1_g000002 Rmu_sc0012566.1_g000001 Rmu_sc0013807.1_g000007 Rmu_sc0015817.1_g000001 Rmu_sc0015930.1_g000011 Rmu_sc0018873.1_g000003 Rmu_sc0020929.1_g000001
rosa_roxburghii Rroxscaffold_2G00081310 Rroxscaffold_2G00111790 Rroxscaffold_5G00349530 Rroxscaffold_5G00356270 Rroxscaffold_5G00356280 Rroxscaffold_5G00356290
rosa_rugosa Rorug01G0056400 Rorug01G0056500 Rorug02G0247000 Rorug03G0271700 Rorug04G0157900 Rorug05G0221700 Rorug05G0251400 Rorug05G0251400 Rorug06G0087300 Rorug07G0221900 Rorug07G0221900
rosa_samantha Rh1AG073200 Rh1AG073300 Rh1AG124600 Rh1AG124700 Rh1BG091900 Rh1CG031600 Rh1CG072100 Rh1CG072200 Rh1CG118800 Rh1CG276600 Rh1CG276700 Rh1DG077300 Rh2BG192000 Rh2BG330900 Rh2BG331000 Rh2BG517700 Rh2BG517800 Rh2CG188300 Rh2DG120800 Rh2DG323900 Rh2DG420700 Rh2DG433000 Rh2DG529400 Rh2DG529500 Rh3DG358100 Rh3DG358200 Rh4BG129700 Rh4BG129800 Rh4BG129900 Rh4BG166400 Rh4CG032000 Rh4DG024800 Rh4DG039500 Rh5AG223400 Rh5BG244500 Rh5BG244600 Rh5BG244700 Rh5CG363000 Rh5CG366900 Rh6AG117500 Rh6AG188600 Rh6AG188700 Rh6AG188800 Rh6BG111400 Rh6BG140800 Rh6BG178800 Rh6DG124100 Rh6DG210000 Rh7AG441200 Rh7BG296800 Rh7BG413900 Rh7BG414000 Rh7BG452400 Rh7DG234000 Rh7DG234100
rosa_wichuraiana Rw2G019410 Rw5G042140 Rw7G019590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 204
AciI CCGC 2 cut(s) 370, 404
AfaI GTAC 2 cut(s) 7, 469
AfiI CCNNNNNNNGG 2 cut(s) 263, 423
AgsI TTSAA 2 cut(s) 128, 411
AjnI CCWGG 1 cut(s) 470
AjuI GAANNNNNNNTTGG 2 cut(s) 293, 325
AluBI AGCT 1 cut(s) 164
AluI AGCT 1 cut(s) 164
Alw21I GWGCWC 1 cut(s) 256
Alw26I GTCTC 2 cut(s) 361, 438
AoxI GGCC 1 cut(s) 265
AspLEI GCGC 1 cut(s) 145
AspS9I GGNCC 1 cut(s) 265
AsuC2I CCSGG 1 cut(s) 68
BaeGI GKGCMC 1 cut(s) 178
BbsI GAAGAC 1 cut(s) 118
Bbv12I GWGCWC 1 cut(s) 256
BccI CCATC 2 cut(s) 85, 228
BceAI ACGGC 1 cut(s) 65
BciT130I CCWGG 1 cut(s) 472
BcnI CCSGG 1 cut(s) 68
BcoDI GTCTC 2 cut(s) 361, 438
Bme1390I CCNGG 2 cut(s) 68, 472
BmgT120I GGNCC 1 cut(s) 265
BmiI GGNNCC 1 cut(s) 24
BmrFI CCNGG 2 cut(s) 68, 472
BpiI GAAGAC 1 cut(s) 118
BpuMI CCSGG 1 cut(s) 68
BsaJI CCNNGG 1 cut(s) 67
BsaXI ACNNNNNCTCC 2 cut(s) 138, 168
Bsc4I CCNNNNNNNGG 2 cut(s) 263, 423
Bse1I ACTGG 1 cut(s) 171
BseBI CCWGG 1 cut(s) 472
BseDI CCNNGG 1 cut(s) 67
BseGI GGATG 3 cut(s) 186, 228, 246
BseLI CCNNNNNNNGG 2 cut(s) 263, 423
BseNI ACTGG 1 cut(s) 171
BseSI GKGCMC 1 cut(s) 178
BshFI GGCC 1 cut(s) 267
BsiHKAI GWGCWC 1 cut(s) 256
BsiSI CCGG 1 cut(s) 67
BslI CCNNNNNNNGG 2 cut(s) 263, 423
BsmAI GTCTC 2 cut(s) 361, 438
BsnI GGCC 1 cut(s) 267
Bsp1286I GDGCHC 2 cut(s) 178, 256
Bsp143I GATC 2 cut(s) 10, 269
BspACI CCGC 2 cut(s) 370, 404
BspANI GGCC 1 cut(s) 267
BspLI GGNNCC 1 cut(s) 24
BsrI ACTGG 1 cut(s) 171
BssECI CCNNGG 1 cut(s) 67
BssMI GATC 2 cut(s) 10, 269
Bst2UI CCWGG 1 cut(s) 472
Bst4CI ACNGT 1 cut(s) 117
Bst6I CTCTTC 1 cut(s) 452
BstDEI CTNAG 1 cut(s) 158
BstF5I GGATG 3 cut(s) 186, 228, 246
BstHHI GCGC 1 cut(s) 145
BstKTI GATC 2 cut(s) 13, 272
BstMAI GTCTC 2 cut(s) 361, 438
BstMBI GATC 2 cut(s) 10, 269
BstNI CCWGG 1 cut(s) 472
BstNSI RCATGY 1 cut(s) 252
BstSCI CCNGG 2 cut(s) 66, 470
BstSLI GKGCMC 1 cut(s) 178
BstV2I GAAGAC 1 cut(s) 118
BsuRI GGCC 1 cut(s) 267
BtsCI GGATG 3 cut(s) 186, 228, 246
BtsIMutI CAGTG 2 cut(s) 122, 178
CfoI GCGC 1 cut(s) 145
Cfr13I GGNCC 1 cut(s) 265
CsiI ACCWGGT 1 cut(s) 470
Csp6I GTAC 2 cut(s) 6, 468
CviAII CATG 2 cut(s) 219, 249
CviJI RGCY 4 cut(s) 19, 164, 267, 509
CviKI_1 RGCY 4 cut(s) 19, 164, 267, 509
CviQI GTAC 2 cut(s) 6, 468
DdeI CTNAG 1 cut(s) 158
DpnI GATC 2 cut(s) 12, 271
DpnII GATC 2 cut(s) 10, 269
Eam1104I CTCTTC 1 cut(s) 452
EarI CTCTTC 1 cut(s) 452
EcoRII CCWGG 1 cut(s) 470
FaeI CATG 2 cut(s) 222, 252
FaiI YATR 9 cut(s) 28, 150, 152, 204, 220, 250, 259, 363, 513
FatI CATG 2 cut(s) 218, 248
FokI GGATG 3 cut(s) 173, 235, 253
GlaI GCGC 1 cut(s) 144
HaeIII GGCC 1 cut(s) 267
HapII CCGG 1 cut(s) 67
HhaI GCGC 1 cut(s) 145
Hin1II CATG 2 cut(s) 222, 252
Hin6I GCGC 1 cut(s) 143
HinP1I GCGC 1 cut(s) 143
HincII GTYRAC 1 cut(s) 387
HindII GTYRAC 1 cut(s) 387
HinfI GANTC 1 cut(s) 407
HpaII CCGG 1 cut(s) 67
Hpy166II GTNNAC 1 cut(s) 387
Hpy188I TCNGA 1 cut(s) 478
Hpy8I GTNNAC 1 cut(s) 387
HpyCH4III ACNGT 1 cut(s) 117
HpyCH4V TGCA 3 cut(s) 47, 123, 216
HpyF3I CTNAG 1 cut(s) 158
Hsp92II CATG 2 cut(s) 222, 252
HspAI GCGC 1 cut(s) 143
Kzo9I GATC 2 cut(s) 10, 269
LmnI GCTCC 1 cut(s) 259
LpnPI CCDG 6 cut(s) 5, 80, 184, 457, 471, 484
MabI ACCWGGT 1 cut(s) 470
MalI GATC 2 cut(s) 12, 271
MboI GATC 2 cut(s) 10, 269
MboII GAAGA 5 cut(s) 123, 140, 423, 469, 504
MhlI GDGCHC 2 cut(s) 178, 256
MluCI AATT 1 cut(s) 481
MnlI CCTC 6 cut(s) 237, 391, 445, 447, 453, 509
MslI CAYNNNNRTG 1 cut(s) 221
MspI CCGG 1 cut(s) 67
MspR9I CCNGG 2 cut(s) 68, 472
MvaI CCWGG 1 cut(s) 472
NciI CCSGG 1 cut(s) 68
NdeII GATC 2 cut(s) 10, 269
NlaIII CATG 2 cut(s) 222, 252
NlaIV GGNNCC 1 cut(s) 24
NspI RCATGY 1 cut(s) 252
PfeI GAWTC 1 cut(s) 407
PsiI TTATAA 1 cut(s) 204
Psp6I CCWGG 1 cut(s) 470
PspGI CCWGG 1 cut(s) 470
PspN4I GGNNCC 1 cut(s) 24
PspPI GGNCC 1 cut(s) 265
RsaI GTAC 2 cut(s) 7, 469
RsaNI GTAC 2 cut(s) 6, 468
RseI CAYNNNNRTG 1 cut(s) 221
Sau3AI GATC 2 cut(s) 10, 269
Sau96I GGNCC 1 cut(s) 265
ScrFI CCNGG 2 cut(s) 68, 472
SduI GDGCHC 2 cut(s) 178, 256
SetI ASST 6 cut(s) 44, 166, 310, 381, 476, 501
SexAI ACCWGGT 1 cut(s) 470
SmiMI CAYNNNNRTG 1 cut(s) 221
Sse9I AATT 1 cut(s) 481
SsiI CCGC 2 cut(s) 370, 404
StyD4I CCNGG 2 cut(s) 66, 470
TaaI ACNGT 1 cut(s) 117
TasI AATT 1 cut(s) 481
TfiI GAWTC 1 cut(s) 407
TscAI CASTG 2 cut(s) 122, 178
TspRI CASTG 2 cut(s) 122, 178
XceI RCATGY 1 cut(s) 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.