Rmu_sc0002281.1_g000028

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002281.1
OG0000253
Physical Location & Seq
Reverse (-)
112164 .. 113135
972 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002281.1_g000028.1.cds

Sequence Viewer

Length: 972 bp
atgaacccacatggagaactttgcactgaacgagttcccagaaaaggcgaacgtgtagccaaaaacggtcgggaatacaagagatctcttcctttaagttcgatcaagcttaccatgtcgcttgagagtcggccaacgtgggctactcgggccggtgtgcgttctggcattcttcgattcgaccctcatgcaaaggatgaggtcatcaaatcgtgtccaagttatggcaacgtgtttcaggcctatactctggaaaaggtgaacaatgctgagcatggtgatgccaagatgttggtcggcatgaacttttatccagcactgcacaggatgttgcagagtaaacaagaatggggccatgattttaaatttcgaggtcgatcaatctttggctttggcgtattagaatggactgaaactatcttggagaccttcaaggataccttatacaaagcaggtatatatggagctgttgctgtttctcgctatccttacgagtgttcaaagaatgtttggagggcattttgtgaattatggggccctttgtccaacacattgcattttgccgatggtgagatgagcatttctttatctgacttgcaagttatcggaggtctgcccatttctggcgttcagtatgaagaatttcttccgactaacaaggatttgtggaataaagatttatatcctcccacagtactggagcttttacagatacattctgcattgtgtattgagtatgggtacgatgccatttactgggatcaatggcttacccattttttccggggggaactcatatatgcctcacctagtgaaggcaaggcagtgctgccgaagccaaggacccctaaactaccattgagaatttctgaggaagggaagcttgctgcttttattgtattttggttgtgcaggtttgtcccctctccatttcattttgtttgccagtttgtattggatacattttcctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

323

Amino Acids

36.98

Weight (kDa)

8.08

Isoelectric Point (pI)

41.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000253)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28912 FvH4_3g31370 FvH4_3g31371 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_6g28991 FvH4_7g16740 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610
malus_domestica MD10G1126100.v1.1 MD10G1312700.v1.1
rosa_chinensis RchiOBHm_Chr6g0276621
rosa_laevigata RLG00000023327 RLG00000023328
rosa_multiflora Rmu_co8195922.1_g000001 Rmu_co8303105.1_g000001 Rmu_co8385689.1_g000001 Rmu_sc0000385.1_g000010 Rmu_sc0000594.1_g000002 Rmu_sc0000857.1_g000010 Rmu_sc0001016.1_g000053 Rmu_sc0001468.1_g000028 Rmu_sc0001548.1_g000047 Rmu_sc0001548.1_g000048 Rmu_sc0002281.1_g000026 Rmu_sc0002281.1_g000027 Rmu_sc0002281.1_g000028 Rmu_sc0002478.1_g000001 Rmu_sc0002513.1_g000014 Rmu_sc0002662.1_g000017 Rmu_sc0003936.1_g000040 Rmu_sc0004084.1_g000047 Rmu_sc0005529.1_g000005 Rmu_sc0005529.1_g000006 Rmu_sc0005728.1_g000010 Rmu_sc0005747.1_g000017 Rmu_sc0005747.1_g000018 Rmu_sc0006385.1_g000001 Rmu_sc0006550.1_g000019 Rmu_sc0006803.1_g000033 Rmu_sc0007102.1_g000011 Rmu_sc0011018.1_g000001 Rmu_sc0011452.1_g000014 Rmu_sc0011805.1_g000001 Rmu_sc0011805.1_g000002 Rmu_sc0012566.1_g000001 Rmu_sc0013807.1_g000007 Rmu_sc0015817.1_g000001 Rmu_sc0015930.1_g000011 Rmu_sc0018873.1_g000003 Rmu_sc0020929.1_g000001
rosa_roxburghii Rroxscaffold_2G00081310 Rroxscaffold_2G00111790 Rroxscaffold_5G00349530 Rroxscaffold_5G00356270 Rroxscaffold_5G00356280 Rroxscaffold_5G00356290
rosa_rugosa Rorug01G0056400 Rorug01G0056500 Rorug02G0247000 Rorug03G0271700 Rorug04G0157900 Rorug05G0221700 Rorug05G0251400 Rorug05G0251400 Rorug06G0087300 Rorug07G0221900 Rorug07G0221900
rosa_samantha Rh1AG073200 Rh1AG073300 Rh1AG124600 Rh1AG124700 Rh1BG091900 Rh1CG031600 Rh1CG072100 Rh1CG072200 Rh1CG118800 Rh1CG276600 Rh1CG276700 Rh1DG077300 Rh2BG192000 Rh2BG330900 Rh2BG331000 Rh2BG517700 Rh2BG517800 Rh2CG188300 Rh2DG120800 Rh2DG323900 Rh2DG420700 Rh2DG433000 Rh2DG529400 Rh2DG529500 Rh3DG358100 Rh3DG358200 Rh4BG129700 Rh4BG129800 Rh4BG129900 Rh4BG166400 Rh4CG032000 Rh4DG024800 Rh4DG039500 Rh5AG223400 Rh5BG244500 Rh5BG244600 Rh5BG244700 Rh5CG363000 Rh5CG366900 Rh6AG117500 Rh6AG188600 Rh6AG188700 Rh6AG188800 Rh6BG111400 Rh6BG140800 Rh6BG178800 Rh6DG124100 Rh6DG210000 Rh7AG441200 Rh7BG296800 Rh7BG413900 Rh7BG414000 Rh7BG452400 Rh7DG234000 Rh7DG234100
rosa_wichuraiana Rw2G019410 Rw5G042140 Rw7G019590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 443, 903
AccB7I CCANNNNNTGG 2 cut(s) 224, 756
AclWI GGATC 1 cut(s) 768
AcoI YGGCCR 1 cut(s) 131
AcsI RAATTY 3 cut(s) 365, 641, 864
AdeI CACNNNGTG 1 cut(s) 812
AfaI GTAC 2 cut(s) 696, 743
AfiI CCNNNNNNNGG 5 cut(s) 44, 224, 623, 756, 815
AflIII ACRYGT 2 cut(s) 52, 231
AgsI TTSAA 2 cut(s) 433, 501
AluBI AGCT 4 cut(s) 109, 467, 703, 883
AluI AGCT 4 cut(s) 109, 467, 703, 883
Alw26I GTCTC 1 cut(s) 419
AlwI GGATC 1 cut(s) 768
Ama87I CYCGRG 1 cut(s) 147
AoxI GGCC 5 cut(s) 131, 150, 240, 352, 535
ApaI GGGCCC 1 cut(s) 539
ApeKI GCWGC 2 cut(s) 829, 887
ApoI RAATTY 3 cut(s) 365, 641, 864
Asp700I GAANNNNTTC 3 cut(s) 33, 642, 645
AspS9I GGNCC 5 cut(s) 150, 352, 535, 536, 843
AsuC2I CCSGG 1 cut(s) 785
AsuHPI GGTGA 4 cut(s) 271, 290, 581, 798
AvaI CYCGRG 1 cut(s) 147
AvaII GGWCC 1 cut(s) 843
BaeGI GKGCMC 1 cut(s) 539
BanII GRGCYC 1 cut(s) 539
BbvI GCAGC 2 cut(s) 816, 874
BccI CCATC 1 cut(s) 560
BcgI CGANNNNNNTGC 2 cut(s) 170, 204
BciVI GTATCC 2 cut(s) 430, 952
BcnI CCSGG 1 cut(s) 785
BcoDI GTCTC 1 cut(s) 419
BfaI CTAG 1 cut(s) 810
BfuAI ACCTGC 2 cut(s) 443, 903
BfuI GTATCC 2 cut(s) 430, 952
BglII AGATCT 1 cut(s) 83
BisI GCNGC 2 cut(s) 830, 888
BlpI GCTNAGC 1 cut(s) 270
BlsI GCNGC 2 cut(s) 831, 889
BmcAI AGTACT 1 cut(s) 696
Bme1390I CCNGG 1 cut(s) 785
Bme18I GGWCC 1 cut(s) 843
BmeT110I CYCGRG 1 cut(s) 147
BmgT120I GGNCC 5 cut(s) 150, 352, 535, 536, 843
BmiI GGNNCC 4 cut(s) 353, 536, 537, 845
BmrFI CCNGG 1 cut(s) 785
BmrI ACTGGG 1 cut(s) 766
BmsI GCATC 2 cut(s) 271, 736
BmuI ACTGGG 1 cut(s) 766
BpmI CTGGAG 1 cut(s) 719
Bpu1102I GCTNAGC 1 cut(s) 270
BpuEI CTTGAG 1 cut(s) 143
BpuMI CCSGG 1 cut(s) 785
BsaBI GATNNNNATC 1 cut(s) 681
BsaI GGTCTC 1 cut(s) 419
BsaJI CCNNGG 2 cut(s) 784, 839
Bsc4I CCNNNNNNNGG 5 cut(s) 44, 224, 623, 756, 815
Bse118I RCCGGY 1 cut(s) 152
Bse1I ACTGG 3 cut(s) 702, 761, 946
Bse3DI GCAATG 1 cut(s) 551
Bse8I GATNNNNATC 1 cut(s) 681
BseDI CCNNGG 2 cut(s) 784, 839
BseGI GGATG 2 cut(s) 202, 333
BseJI GATNNNNATC 1 cut(s) 681
BseLI CCNNNNNNNGG 5 cut(s) 44, 224, 623, 756, 815
BseMI GCAATG 1 cut(s) 551
BseMII CTCAG 2 cut(s) 261, 861
BseNI ACTGG 3 cut(s) 702, 761, 946
BseSI GKGCMC 1 cut(s) 539
BseXI GCAGC 2 cut(s) 816, 874
BsgI GTGCAG 2 cut(s) 305, 931
Bsh1285I CGRYCG 1 cut(s) 70
BshFI GGCC 5 cut(s) 133, 152, 242, 354, 537
BsiEI CGRYCG 1 cut(s) 70
BsiHKCI CYCGRG 1 cut(s) 147
BsiSI CCGG 2 cut(s) 153, 784
BslFI GGGAC 1 cut(s) 905
BslI CCNNNNNNNGG 5 cut(s) 44, 224, 623, 756, 815
BsmAI GTCTC 1 cut(s) 419
BsmFI GGGAC 1 cut(s) 905
BsmI GAATGC 1 cut(s) 168
BsnI GGCC 5 cut(s) 133, 152, 242, 354, 537
Bso31I GGTCTC 1 cut(s) 419
BsoBI CYCGRG 1 cut(s) 147
Bsp120I GGGCCC 1 cut(s) 535
Bsp1286I GDGCHC 1 cut(s) 539
Bsp143I GATC 4 cut(s) 83, 102, 377, 760
Bsp1720I GCTNAGC 1 cut(s) 270
BspANI GGCC 5 cut(s) 133, 152, 242, 354, 537
BspCNI CTCAG 2 cut(s) 262, 862
BspLI GGNNCC 4 cut(s) 353, 536, 537, 845
BspMI ACCTGC 2 cut(s) 443, 903
BspPI GGATC 1 cut(s) 768
BspTNI GGTCTC 1 cut(s) 419
BsrDI GCAATG 1 cut(s) 551
BsrFI RCCGGY 1 cut(s) 152
BsrI ACTGG 3 cut(s) 702, 761, 946
BssAI RCCGGY 1 cut(s) 152
BssECI CCNNGG 2 cut(s) 784, 839
BssMI GATC 4 cut(s) 83, 102, 377, 760
BssT1I CCWWGG 1 cut(s) 839
Bst4CI ACNGT 2 cut(s) 68, 694
Bst6I CTCTTC 1 cut(s) 93
BstC8I GCNNGC 1 cut(s) 885
BstDEI CTNAG 2 cut(s) 270, 870
BstENI CCTNNNNNAGG 1 cut(s) 813
BstF5I GGATG 2 cut(s) 202, 333
BstKTI GATC 4 cut(s) 86, 105, 380, 763
BstMAI GTCTC 1 cut(s) 419
BstMBI GATC 4 cut(s) 83, 102, 377, 760
BstMCI CGRYCG 1 cut(s) 70
BstMWI GCNNNNNNNGC 2 cut(s) 149, 835
BstSCI CCNGG 1 cut(s) 783
BstSLI GKGCMC 1 cut(s) 539
BstV1I GCAGC 2 cut(s) 816, 874
BstX2I RGATCY 1 cut(s) 83
BstXI CCANNNNNNTGG 2 cut(s) 292, 697
BstYI RGATCY 1 cut(s) 83
BsuI GTATCC 2 cut(s) 430, 952
BsuRI GGCC 5 cut(s) 133, 152, 242, 354, 537
BtsCI GGATG 2 cut(s) 202, 333
BtsI GCAGTG 2 cut(s) 317, 831
BtsIMutI CAGTG 3 cut(s) 24, 317, 831
BveI ACCTGC 2 cut(s) 443, 903
Cac8I GCNNGC 1 cut(s) 885
Cfr10I RCCGGY 1 cut(s) 152
Cfr13I GGNCC 5 cut(s) 150, 352, 535, 536, 843
Csp6I GTAC 2 cut(s) 695, 742
CviAII CATG 6 cut(s) 11, 115, 188, 275, 301, 356
CviQI GTAC 2 cut(s) 695, 742
DdeI CTNAG 2 cut(s) 270, 870
DpnI GATC 4 cut(s) 85, 104, 379, 762
DpnII GATC 4 cut(s) 83, 102, 377, 760
DraI TTTAAA 1 cut(s) 364
DraIII CACNNNGTG 1 cut(s) 812
EaeI YGGCCR 1 cut(s) 131
Eam1104I CTCTTC 1 cut(s) 93
EarI CTCTTC 1 cut(s) 93
Eco130I CCWWGG 1 cut(s) 839
Eco147I AGGCCT 1 cut(s) 242
Eco24I GRGCYC 1 cut(s) 539
Eco31I GGTCTC 1 cut(s) 419
Eco47I GGWCC 1 cut(s) 843
Eco88I CYCGRG 1 cut(s) 147
EcoNI CCTNNNNNAGG 1 cut(s) 813
EcoO109I RGGNCCY 3 cut(s) 535, 536, 843
EcoT14I CCWWGG 1 cut(s) 839
EcoT38I GRGCYC 1 cut(s) 539
ErhI CCWWGG 1 cut(s) 839
FaeI CATG 6 cut(s) 14, 118, 191, 278, 304, 359
FalI AAGNNNNNCTT 6 cut(s) 425, 457, 630, 662, 867, 899
FaqI GGGAC 1 cut(s) 905
FatI CATG 6 cut(s) 10, 114, 187, 274, 300, 355
Fnu4HI GCNGC 2 cut(s) 830, 888
FokI GGATG 2 cut(s) 209, 340
FriOI GRGCYC 1 cut(s) 539
Fsp4HI GCNGC 2 cut(s) 830, 888
FspBI CTAG 1 cut(s) 810
GluI GCNGC 2 cut(s) 830, 888
GsuI CTGGAG 1 cut(s) 719
HaeIII GGCC 5 cut(s) 133, 152, 242, 354, 537
HapII CCGG 2 cut(s) 153, 784
Hin1II CATG 6 cut(s) 14, 118, 191, 278, 304, 359
HindIII AAGCTT 2 cut(s) 107, 881
HinfI GANTC 2 cut(s) 127, 177
HpaII CCGG 2 cut(s) 153, 784
HphI GGTGA 4 cut(s) 271, 290, 581, 798
Hpy166II GTNNAC 2 cut(s) 262, 341
Hpy188I TCNGA 4 cut(s) 592, 608, 651, 871
Hpy188III TCNNGA 3 cut(s) 71, 251, 969
Hpy8I GTNNAC 2 cut(s) 262, 341
HpyAV CCTTC 3 cut(s) 439, 809, 869
HpyCH4III ACNGT 2 cut(s) 68, 694
HpyCH4IV ACGT 3 cut(s) 52, 137, 231
HpyCH4V TGCA 8 cut(s) 24, 191, 322, 334, 556, 598, 722, 912
HpyF10VI GCNNNNNNNGC 2 cut(s) 149, 835
HpyF3I CTNAG 2 cut(s) 270, 870
HpySE526I ACGT 3 cut(s) 52, 137, 231
Hsp92II CATG 6 cut(s) 14, 118, 191, 278, 304, 359
Kzo9I GATC 4 cut(s) 83, 102, 377, 760
LmnI GCTCC 2 cut(s) 464, 700
Lsp1109I GCAGC 2 cut(s) 816, 874
LweI GCATC 2 cut(s) 271, 736
MaeI CTAG 1 cut(s) 810
MaeII ACGT 3 cut(s) 52, 137, 231
MalI GATC 4 cut(s) 85, 104, 379, 762
MboI GATC 4 cut(s) 83, 102, 377, 760
MboII GAAGA 4 cut(s) 80, 164, 638, 650
MflI RGATCY 1 cut(s) 83
MhlI GDGCHC 1 cut(s) 539
MluCI AATT 4 cut(s) 365, 527, 641, 864
MlyI GAGTC 1 cut(s) 136
MmeI TCCRAC 2 cut(s) 570, 674
MnlI CCTC 9 cut(s) 193, 195, 365, 507, 602, 696, 814, 865, 934
MroXI GAANNNNTTC 3 cut(s) 33, 642, 645
MseI TTAA 2 cut(s) 95, 363
MslI CAYNNNNRTG 1 cut(s) 279
MspI CCGG 2 cut(s) 153, 784
MspR9I CCNGG 1 cut(s) 785
Mva1269I GAATGC 1 cut(s) 168
MwoI GCNNNNNNNGC 2 cut(s) 149, 835
NciI CCSGG 1 cut(s) 785
NdeII GATC 4 cut(s) 83, 102, 377, 760
NlaIII CATG 6 cut(s) 14, 118, 191, 278, 304, 359
NlaIV GGNNCC 4 cut(s) 353, 536, 537, 845
PceI AGGCCT 1 cut(s) 242
PctI GAATGC 1 cut(s) 168
PdmI GAANNNNTTC 3 cut(s) 33, 642, 645
PfeI GAWTC 1 cut(s) 177
PflMI CCANNNNNTGG 2 cut(s) 224, 756
PkrI GCNGC 2 cut(s) 831, 889
PleI GAGTC 1 cut(s) 135
PpsI GAGTC 1 cut(s) 135
PpuMI RGGWCCY 1 cut(s) 843
Psp5II RGGWCCY 1 cut(s) 843
PspN4I GGNNCC 4 cut(s) 353, 536, 537, 845
PspOMI GGGCCC 1 cut(s) 535
PspPI GGNCC 5 cut(s) 150, 352, 535, 536, 843
PspPPI RGGWCCY 1 cut(s) 843
PsuI RGATCY 1 cut(s) 83
RsaI GTAC 2 cut(s) 696, 743
RsaNI GTAC 2 cut(s) 695, 742
RseI CAYNNNNRTG 1 cut(s) 279
SaqAI TTAA 2 cut(s) 95, 363
SatI GCNGC 2 cut(s) 830, 888
Sau3AI GATC 4 cut(s) 83, 102, 377, 760
Sau96I GGNCC 5 cut(s) 150, 352, 535, 536, 843
ScaI AGTACT 1 cut(s) 696
SchI GAGTC 1 cut(s) 136
ScrFI CCNGG 1 cut(s) 785
SduI GDGCHC 1 cut(s) 539
SfaNI GCATC 2 cut(s) 271, 736
SinI GGWCC 1 cut(s) 843
SmiMI CAYNNNNRTG 1 cut(s) 279
SmlI CTYRAG 1 cut(s) 122
SmoI CTYRAG 1 cut(s) 122
Sse9I AATT 4 cut(s) 365, 527, 641, 864
SseBI AGGCCT 1 cut(s) 242
SspMI CTAG 1 cut(s) 810
StuI AGGCCT 1 cut(s) 242
StyD4I CCNGG 1 cut(s) 783
StyI CCWWGG 1 cut(s) 839
TaaI ACNGT 2 cut(s) 68, 694
TaiI ACGT 3 cut(s) 55, 140, 234
TaqI TCGA 5 cut(s) 101, 175, 180, 370, 376
TasI AATT 4 cut(s) 365, 527, 641, 864
TatI WGTACW 1 cut(s) 694
TfiI GAWTC 1 cut(s) 177
Tru1I TTAA 2 cut(s) 95, 363
Tru9I TTAA 2 cut(s) 95, 363
TscAI CASTG 3 cut(s) 31, 324, 831
TseI GCWGC 2 cut(s) 829, 887
TspDTI ATGAA 4 cut(s) 17, 317, 651, 923
TspRI CASTG 3 cut(s) 31, 324, 831
Van91I CCANNNNNTGG 2 cut(s) 224, 756
VpaK11BI GGWCC 1 cut(s) 843
XagI CCTNNNNNAGG 1 cut(s) 813
XapI RAATTY 3 cut(s) 365, 641, 864
XmnI GAANNNNTTC 3 cut(s) 33, 642, 645
XspI CTAG 1 cut(s) 810
ZrmI AGTACT 1 cut(s) 696
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.