Rmu_sc0004084.1_g000047

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004084.1
OG0000253
Physical Location & Seq
Forward (+)
243687 .. 244675
989 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004084.1_g000047.1.cds

Sequence Viewer

Length: 936 bp
atggatgataactttagaggcgatggtcacctttctccaagggatgatggtgttgccttccatattagtgatggaataattatcccgaagctgaaatcagtaatagtacgagctccagcgtcgaatgatccagatcctgagccccatccaaatgacttggaggcaagaccaagcgaatcagtggaaaaagaatgcgatatagagccattatcagaggctccaattccagagacaaaggtttatgaacaacaacctgagcctaaattaagggacttcaatatccaaattgaagacacccgtgactctactagtggggccactaaacctatcaattctaatgcctccgagcatattgatgaagatattagctcacccactgaggctacatcgactctgcatgaaattttgatcctagacaaactgagcccatctcgatcatttggggagattcttgattgtcaggatgaagtttcaaaaacacttgatgtgttggagctaatgttcaaaaccctcagctctggtaaggacaagtttgagtggtttgttgcaaaagtttatctaacctttgacttggcagctcagctttctcaagacaagagcattattgagaaagattacggcttggacattgagcgcatcaatgagttaattcaaaaccataaaaagtatcaagctgccaagaaggtccttgattcggaattattgagccttaatcaggaacttgaatgtttaaaggccatcgaacgaagtattattgaggtagaagaggattatgagattgcaaaaagtcaccttgaaaagaaaataagctggtctgaggcttctcttgagcgtcaaaacaagctggatgaagagcttcgtcgggcaaggattgaggctcgagaggataaacttgcagaatttaaaaatgtcaagagctcatttaaagttcggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

311

Amino Acids

35.38

Weight (kDa)

4.75

Isoelectric Point (pI)

56.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000253)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28912 FvH4_3g31370 FvH4_3g31371 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_6g28991 FvH4_7g16740 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610
malus_domestica MD10G1126100.v1.1 MD10G1312700.v1.1
rosa_chinensis RchiOBHm_Chr6g0276621
rosa_laevigata RLG00000023327 RLG00000023328
rosa_multiflora Rmu_co8195922.1_g000001 Rmu_co8303105.1_g000001 Rmu_co8385689.1_g000001 Rmu_sc0000385.1_g000010 Rmu_sc0000594.1_g000002 Rmu_sc0000857.1_g000010 Rmu_sc0001016.1_g000053 Rmu_sc0001468.1_g000028 Rmu_sc0001548.1_g000047 Rmu_sc0001548.1_g000048 Rmu_sc0002281.1_g000026 Rmu_sc0002281.1_g000027 Rmu_sc0002281.1_g000028 Rmu_sc0002478.1_g000001 Rmu_sc0002513.1_g000014 Rmu_sc0002662.1_g000017 Rmu_sc0003936.1_g000040 Rmu_sc0004084.1_g000047 Rmu_sc0005529.1_g000005 Rmu_sc0005529.1_g000006 Rmu_sc0005728.1_g000010 Rmu_sc0005747.1_g000017 Rmu_sc0005747.1_g000018 Rmu_sc0006385.1_g000001 Rmu_sc0006550.1_g000019 Rmu_sc0006803.1_g000033 Rmu_sc0007102.1_g000011 Rmu_sc0011018.1_g000001 Rmu_sc0011452.1_g000014 Rmu_sc0011805.1_g000001 Rmu_sc0011805.1_g000002 Rmu_sc0012566.1_g000001 Rmu_sc0013807.1_g000007 Rmu_sc0015817.1_g000001 Rmu_sc0015930.1_g000011 Rmu_sc0018873.1_g000003 Rmu_sc0020929.1_g000001
rosa_roxburghii Rroxscaffold_2G00081310 Rroxscaffold_2G00111790 Rroxscaffold_5G00349530 Rroxscaffold_5G00356270 Rroxscaffold_5G00356280 Rroxscaffold_5G00356290
rosa_rugosa Rorug01G0056400 Rorug01G0056500 Rorug02G0247000 Rorug03G0271700 Rorug04G0157900 Rorug05G0221700 Rorug05G0251400 Rorug05G0251400 Rorug06G0087300 Rorug07G0221900 Rorug07G0221900
rosa_samantha Rh1AG073200 Rh1AG073300 Rh1AG124600 Rh1AG124700 Rh1BG091900 Rh1CG031600 Rh1CG072100 Rh1CG072200 Rh1CG118800 Rh1CG276600 Rh1CG276700 Rh1DG077300 Rh2BG192000 Rh2BG330900 Rh2BG331000 Rh2BG517700 Rh2BG517800 Rh2CG188300 Rh2DG120800 Rh2DG323900 Rh2DG420700 Rh2DG433000 Rh2DG529400 Rh2DG529500 Rh3DG358100 Rh3DG358200 Rh4BG129700 Rh4BG129800 Rh4BG129900 Rh4BG166400 Rh4CG032000 Rh4DG024800 Rh4DG039500 Rh5AG223400 Rh5BG244500 Rh5BG244600 Rh5BG244700 Rh5CG363000 Rh5CG366900 Rh6AG117500 Rh6AG188600 Rh6AG188700 Rh6AG188800 Rh6BG111400 Rh6BG140800 Rh6BG178800 Rh6DG124100 Rh6DG210000 Rh7AG441200 Rh7BG296800 Rh7BG413900 Rh7BG414000 Rh7BG452400 Rh7DG234000 Rh7DG234100
rosa_wichuraiana Rw2G019410 Rw5G042140 Rw7G019590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 122, 128, 403
AcsI RAATTY 2 cut(s) 402, 899
AfaI GTAC 1 cut(s) 108
AfiI CCNNNNNNNGG 2 cut(s) 694, 715
AgsI TTSAA 7 cut(s) 277, 290, 474, 505, 653, 725, 797
AhlI ACTAGT 1 cut(s) 308
AloI GAACNNNNNNTCC 2 cut(s) 485, 517
Alw21I GWGCWC 2 cut(s) 115, 920
Alw26I GTCTC 1 cut(s) 224
AlwI GGATC 3 cut(s) 122, 128, 403
AlwNI CAGNNNCTG 1 cut(s) 137
Ama87I CYCGRG 1 cut(s) 879
AoxI GGCC 2 cut(s) 315, 735
ApeKI GCWGC 2 cut(s) 575, 674
ApoI RAATTY 2 cut(s) 402, 899
Asp700I GAANNNNTTC 1 cut(s) 855
AspLEI GCGC 1 cut(s) 636
AspS9I GGNCC 2 cut(s) 315, 685
AsuHPI GGTGA 3 cut(s) 20, 363, 782
AvaI CYCGRG 1 cut(s) 879
AvaII GGWCC 1 cut(s) 685
BanII GRGCYC 4 cut(s) 115, 144, 428, 920
BbsI GAAGAC 1 cut(s) 297
Bbv12I GWGCWC 2 cut(s) 115, 920
BbvCI CCTCAGC 1 cut(s) 512
BbvI GCAGC 2 cut(s) 587, 661
BccI CCATC 6 cut(s) 17, 41, 65, 153, 436, 746
BceAI ACGGC 1 cut(s) 634
BcoDI GTCTC 1 cut(s) 224
BcuI ACTAGT 1 cut(s) 308
BfaI CTAG 2 cut(s) 309, 413
BisI GCNGC 2 cut(s) 576, 675
BlpI GCTNAGC 1 cut(s) 579
BlsI GCNGC 2 cut(s) 577, 676
Bme18I GGWCC 1 cut(s) 685
BmeT110I CYCGRG 1 cut(s) 879
BmgT120I GGNCC 2 cut(s) 315, 685
BmiI GGNNCC 2 cut(s) 219, 316
BmsI GCATC 1 cut(s) 645
BpiI GAAGAC 1 cut(s) 297
BplI GAGNNNNNCTC 2 cut(s) 415, 447
BpmI CTGGAG 1 cut(s) 99
Bpu10I CCTNAGC 3 cut(s) 138, 255, 512
Bpu1102I GCTNAGC 1 cut(s) 579
BpuEI CTTGAG 2 cut(s) 573, 848
BsaBI GATNNNNATC 1 cut(s) 132
BsaJI CCNNGG 1 cut(s) 38
BsaXI ACNNNNNCTCC 2 cut(s) 485, 515
Bsc4I CCNNNNNNNGG 2 cut(s) 694, 715
Bse8I GATNNNNATC 1 cut(s) 132
BseDI CCNNGG 1 cut(s) 38
BseGI GGATG 5 cut(s) 10, 49, 145, 469, 853
BseJI GATNNNNATC 1 cut(s) 132
BseLI CCNNNNNNNGG 2 cut(s) 694, 715
BseMII CTCAG 7 cut(s) 129, 246, 369, 413, 526, 593, 807
BseXI GCAGC 2 cut(s) 587, 661
BshFI GGCC 2 cut(s) 317, 737
BsiHKAI GWGCWC 2 cut(s) 115, 920
BsiHKCI CYCGRG 1 cut(s) 879
BslFI GGGAC 1 cut(s) 284
BslI CCNNNNNNNGG 2 cut(s) 694, 715
BsmAI GTCTC 1 cut(s) 224
BsmFI GGGAC 1 cut(s) 284
BsmI GAATGC 1 cut(s) 197
BsnI GGCC 2 cut(s) 317, 737
BsoBI CYCGRG 1 cut(s) 879
Bsp1286I GDGCHC 4 cut(s) 115, 144, 428, 920
Bsp143I GATC 4 cut(s) 127, 133, 408, 434
Bsp1720I GCTNAGC 1 cut(s) 579
BspANI GGCC 2 cut(s) 317, 737
BspCNI CTCAG 7 cut(s) 130, 247, 370, 414, 525, 592, 808
BspLI GGNNCC 2 cut(s) 219, 316
BspPI GGATC 3 cut(s) 122, 128, 403
BspQI GCTCTTC 1 cut(s) 846
BssECI CCNNGG 1 cut(s) 38
BssMI GATC 4 cut(s) 127, 133, 408, 434
BssT1I CCWWGG 1 cut(s) 38
Bst6I CTCTTC 2 cut(s) 759, 846
BstDEI CTNAG 7 cut(s) 138, 255, 378, 422, 512, 579, 816
BstEII GGTNACC 1 cut(s) 26
BstENI CCTNNNNNAGG 1 cut(s) 713
BstF5I GGATG 5 cut(s) 10, 49, 145, 469, 853
BstHHI GCGC 1 cut(s) 636
BstKTI GATC 4 cut(s) 130, 136, 411, 437
BstMAI GTCTC 1 cut(s) 224
BstMBI GATC 4 cut(s) 127, 133, 408, 434
BstPI GGTNACC 1 cut(s) 26
BstV1I GCAGC 2 cut(s) 587, 661
BstV2I GAAGAC 1 cut(s) 297
BstX2I RGATCY 1 cut(s) 133
BstYI RGATCY 1 cut(s) 133
BsuRI GGCC 2 cut(s) 317, 737
BtgZI GCGATG 1 cut(s) 36
BtsCI GGATG 5 cut(s) 10, 49, 145, 469, 853
BtsIMutI CAGTG 2 cut(s) 186, 375
CaiI CAGNNNCTG 1 cut(s) 137
CfoI GCGC 1 cut(s) 636
Cfr13I GGNCC 2 cut(s) 315, 685
CseI GACGC 2 cut(s) 108, 821
Csp6I GTAC 1 cut(s) 107
CviAII CATG 1 cut(s) 398
CviQI GTAC 1 cut(s) 107
DdeI CTNAG 7 cut(s) 138, 255, 378, 422, 512, 579, 816
DpnI GATC 4 cut(s) 129, 135, 410, 436
DpnII GATC 4 cut(s) 127, 133, 408, 434
DraI TTTAAA 3 cut(s) 732, 904, 925
Eam1104I CTCTTC 2 cut(s) 759, 846
EarI CTCTTC 2 cut(s) 759, 846
Ecl136II GAGCTC 2 cut(s) 113, 918
Eco130I CCWWGG 1 cut(s) 38
Eco24I GRGCYC 4 cut(s) 115, 144, 428, 920
Eco47I GGWCC 1 cut(s) 685
Eco53kI GAGCTC 2 cut(s) 113, 918
Eco88I CYCGRG 1 cut(s) 879
Eco91I GGTNACC 1 cut(s) 26
EcoICRI GAGCTC 2 cut(s) 113, 918
EcoNI CCTNNNNNAGG 1 cut(s) 713
EcoO109I RGGNCCY 1 cut(s) 685
EcoO65I GGTNACC 1 cut(s) 26
EcoT14I CCWWGG 1 cut(s) 38
EcoT38I GRGCYC 4 cut(s) 115, 144, 428, 920
ErhI CCWWGG 1 cut(s) 38
FaeI CATG 1 cut(s) 401
FaiI YATR 7 cut(s) 63, 200, 243, 351, 399, 660, 774
FaqI GGGAC 1 cut(s) 284
FatI CATG 1 cut(s) 397
Fnu4HI GCNGC 2 cut(s) 576, 675
FokI GGATG 5 cut(s) 17, 56, 132, 476, 860
FriOI GRGCYC 4 cut(s) 115, 144, 428, 920
Fsp4HI GCNGC 2 cut(s) 576, 675
FspBI CTAG 2 cut(s) 309, 413
GlaI GCGC 1 cut(s) 635
GluI GCNGC 2 cut(s) 576, 675
GsuI CTGGAG 1 cut(s) 99
HaeIII GGCC 2 cut(s) 317, 737
HgaI GACGC 2 cut(s) 108, 821
HhaI GCGC 1 cut(s) 636
Hin1II CATG 1 cut(s) 401
Hin6I GCGC 1 cut(s) 634
HinP1I GCGC 1 cut(s) 634
HinfI GANTC 5 cut(s) 176, 302, 391, 448, 692
HphI GGTGA 3 cut(s) 20, 363, 782
Hpy188I TCNGA 4 cut(s) 214, 346, 697, 817
Hpy99I CGWCG 2 cut(s) 124, 864
HpyAV CCTTC 2 cut(s) 67, 676
HpyCH4V TGCA 4 cut(s) 397, 548, 782, 896
HpyF3I CTNAG 7 cut(s) 138, 255, 378, 422, 512, 579, 816
Hsp92II CATG 1 cut(s) 401
HspAI GCGC 1 cut(s) 634
Kzo9I GATC 4 cut(s) 127, 133, 408, 434
LguI GCTCTTC 1 cut(s) 846
LmnI GCTCC 3 cut(s) 118, 223, 493
Lsp1109I GCAGC 2 cut(s) 587, 661
LweI GCATC 1 cut(s) 645
MaeI CTAG 2 cut(s) 309, 413
MaeIII GTNAC 3 cut(s) 26, 299, 788
MalI GATC 4 cut(s) 129, 135, 410, 436
MboI GATC 4 cut(s) 127, 133, 408, 434
MboII GAAGA 4 cut(s) 302, 371, 776, 863
MflI RGATCY 1 cut(s) 133
MhlI GDGCHC 4 cut(s) 115, 144, 428, 920
MluCI AATT 9 cut(s) 78, 222, 263, 285, 331, 402, 648, 698, 899
MlyI GAGTC 2 cut(s) 296, 385
MmeI TCCRAC 1 cut(s) 471
MroXI GAANNNNTTC 1 cut(s) 855
MseI TTAA 6 cut(s) 266, 647, 711, 731, 903, 924
MslI CAYNNNNRTG 3 cut(s) 66, 150, 354
Mva1269I GAATGC 1 cut(s) 197
NdeII GATC 4 cut(s) 127, 133, 408, 434
NlaIII CATG 1 cut(s) 401
NlaIV GGNNCC 2 cut(s) 219, 316
NmuCI GTSAC 3 cut(s) 26, 299, 788
PaeR7I CTCGAG 1 cut(s) 879
PciSI GCTCTTC 1 cut(s) 846
PctI GAATGC 1 cut(s) 197
PdmI GAANNNNTTC 1 cut(s) 855
PfeI GAWTC 3 cut(s) 176, 448, 692
PkrI GCNGC 2 cut(s) 577, 676
PleI GAGTC 2 cut(s) 296, 385
PpsI GAGTC 2 cut(s) 296, 385
PpuMI RGGWCCY 1 cut(s) 685
Psp124BI GAGCTC 2 cut(s) 115, 920
Psp5II RGGWCCY 1 cut(s) 685
PspEI GGTNACC 1 cut(s) 26
PspN4I GGNNCC 2 cut(s) 219, 316
PspPI GGNCC 2 cut(s) 315, 685
PspPPI RGGWCCY 1 cut(s) 685
PstNI CAGNNNCTG 1 cut(s) 137
PsuI RGATCY 1 cut(s) 133
RsaI GTAC 1 cut(s) 108
RsaNI GTAC 1 cut(s) 107
RseI CAYNNNNRTG 3 cut(s) 66, 150, 354
SacI GAGCTC 2 cut(s) 115, 920
SapI GCTCTTC 1 cut(s) 846
SaqAI TTAA 6 cut(s) 266, 647, 711, 731, 903, 924
SatI GCNGC 2 cut(s) 576, 675
Sau3AI GATC 4 cut(s) 127, 133, 408, 434
Sau96I GGNCC 2 cut(s) 315, 685
SchI GAGTC 2 cut(s) 296, 385
SduI GDGCHC 4 cut(s) 115, 144, 428, 920
SfaNI GCATC 1 cut(s) 645
Sfr274I CTCGAG 1 cut(s) 879
SinI GGWCC 1 cut(s) 685
SlaI CTCGAG 1 cut(s) 879
SmiMI CAYNNNNRTG 3 cut(s) 66, 150, 354
SmlI CTYRAG 3 cut(s) 588, 827, 879
SmoI CTYRAG 3 cut(s) 588, 827, 879
SpeI ACTAGT 1 cut(s) 308
Sse9I AATT 9 cut(s) 78, 222, 263, 285, 331, 402, 648, 698, 899
SspMI CTAG 2 cut(s) 309, 413
SstI GAGCTC 2 cut(s) 115, 920
StyI CCWWGG 1 cut(s) 38
TaqI TCGA 5 cut(s) 122, 389, 433, 741, 880
TasI AATT 9 cut(s) 78, 222, 263, 285, 331, 402, 648, 698, 899
TfiI GAWTC 3 cut(s) 176, 448, 692
Tru1I TTAA 6 cut(s) 266, 647, 711, 731, 903, 924
Tru9I TTAA 6 cut(s) 266, 647, 711, 731, 903, 924
TscAI CASTG 2 cut(s) 186, 382
TseFI GTSAC 3 cut(s) 26, 299, 788
TseI GCWGC 2 cut(s) 575, 674
Tsp45I GTSAC 3 cut(s) 26, 299, 788
TspDTI ATGAA 5 cut(s) 258, 372, 414, 480, 864
TspRI CASTG 2 cut(s) 186, 382
VpaK11BI GGWCC 1 cut(s) 685
XagI CCTNNNNNAGG 1 cut(s) 713
XapI RAATTY 2 cut(s) 402, 899
XcmI CCANNNNNNNNNTGG 1 cut(s) 68
XhoI CTCGAG 1 cut(s) 879
XmnI GAANNNNTTC 1 cut(s) 855
XspI CTAG 2 cut(s) 309, 413
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.