Rorug03G0271700

NatA auxiliary

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000253
Physical Location & Seq
Reverse (-)
26792267 .. 26792968
702 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0271700.1

Sequence Viewer

Length: 702 bp
ATGCCTACCATTGATTCCATGACCAAAAGTTTTGCTGCGTCACTTGCTATTGCGGGTAATGATGTCGTGGACATCTCTGGCATGTCAAAAGGAGGAGCGCAGCGCACCTCTCAGTCCTACCTCCTCGCCTGGCCGCTCACCAAGAAACCGACGACGACCGTGGATCTGAGGCGCCATTTCCGGCGTGTATGGGTACTAAATCAAGGTTTTAGTGTTCAACAGAGGACCCCAGATCGGTATTTGTTCTCCTTTGATCTTCGAAGCGACTCCAGGAAGGTTATGATGGGAGGGCCGTGGAGCTTTAACTGTTCCCTTGTCGTCCTACAGCCGTATGATGGGGTTGCACCGTTGCAATCGGTGCCGATGCTGGACCTTTTCTTTTGGGTTCGCATAACCAACATGCCGCCGGCGTATGAACAGCGGAATACCATTGCCAATGTTGCCTCGGTGGCTGGAAAGTACTTGGACATTGATGGCAAATTGTTTGATGCTACGGGGGAGATTCGGGTTCATGTGTCCCATTCCATCTTGAAACCTTTCTTTCAGAAGAAAACCCTAAAGTTTGCTAAAGGAGTTGAGCAGGAGGTACACTTTCTATTTGAAAAATTAGTGGGCAAGTGTGATATCTGTGATCGTGTGTTCCATGAACAAGGCCCCTGCAATCCGGATATTTTGCCATCTGCTGTCAAACCGGTTGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NARP1 TPR_11 TPR_2

Protein Analysis

233

Amino Acids

26.2

Weight (kDa)

9.17

Isoelectric Point (pI)

40.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4283 PF14111 46 - 112 7.2e-08 Domain of unknown function (DUF4283)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000253)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28912 FvH4_3g31370 FvH4_3g31371 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_6g28991 FvH4_7g16740 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610
malus_domestica MD10G1126100.v1.1 MD10G1312700.v1.1
rosa_chinensis RchiOBHm_Chr6g0276621
rosa_laevigata RLG00000023327 RLG00000023328
rosa_multiflora Rmu_co8195922.1_g000001 Rmu_co8303105.1_g000001 Rmu_co8385689.1_g000001 Rmu_sc0000385.1_g000010 Rmu_sc0000594.1_g000002 Rmu_sc0000857.1_g000010 Rmu_sc0001016.1_g000053 Rmu_sc0001468.1_g000028 Rmu_sc0001548.1_g000047 Rmu_sc0001548.1_g000048 Rmu_sc0002281.1_g000026 Rmu_sc0002281.1_g000027 Rmu_sc0002281.1_g000028 Rmu_sc0002478.1_g000001 Rmu_sc0002513.1_g000014 Rmu_sc0002662.1_g000017 Rmu_sc0003936.1_g000040 Rmu_sc0004084.1_g000047 Rmu_sc0005529.1_g000005 Rmu_sc0005529.1_g000006 Rmu_sc0005728.1_g000010 Rmu_sc0005747.1_g000017 Rmu_sc0005747.1_g000018 Rmu_sc0006385.1_g000001 Rmu_sc0006550.1_g000019 Rmu_sc0006803.1_g000033 Rmu_sc0007102.1_g000011 Rmu_sc0011018.1_g000001 Rmu_sc0011452.1_g000014 Rmu_sc0011805.1_g000001 Rmu_sc0011805.1_g000002 Rmu_sc0012566.1_g000001 Rmu_sc0013807.1_g000007 Rmu_sc0015817.1_g000001 Rmu_sc0015930.1_g000011 Rmu_sc0018873.1_g000003 Rmu_sc0020929.1_g000001
rosa_roxburghii Rroxscaffold_2G00081310 Rroxscaffold_2G00111790 Rroxscaffold_5G00349530 Rroxscaffold_5G00356270 Rroxscaffold_5G00356280 Rroxscaffold_5G00356290
rosa_rugosa Rorug01G0056400 Rorug01G0056500 Rorug02G0247000 Rorug03G0271700 Rorug04G0157900 Rorug05G0221700 Rorug05G0251400 Rorug05G0251400 Rorug06G0087300 Rorug07G0221900 Rorug07G0221900
rosa_samantha Rh1AG073200 Rh1AG073300 Rh1AG124600 Rh1AG124700 Rh1BG091900 Rh1CG031600 Rh1CG072100 Rh1CG072200 Rh1CG118800 Rh1CG276600 Rh1CG276700 Rh1DG077300 Rh2BG192000 Rh2BG330900 Rh2BG331000 Rh2BG517700 Rh2BG517800 Rh2CG188300 Rh2DG120800 Rh2DG323900 Rh2DG420700 Rh2DG433000 Rh2DG529400 Rh2DG529500 Rh3DG358100 Rh3DG358200 Rh4BG129700 Rh4BG129800 Rh4BG129900 Rh4BG166400 Rh4CG032000 Rh4DG024800 Rh4DG039500 Rh5AG223400 Rh5BG244500 Rh5BG244600 Rh5BG244700 Rh5CG363000 Rh5CG366900 Rh6AG117500 Rh6AG188600 Rh6AG188700 Rh6AG188800 Rh6BG111400 Rh6BG140800 Rh6BG178800 Rh6DG124100 Rh6DG210000 Rh7AG441200 Rh7BG296800 Rh7BG413900 Rh7BG414000 Rh7BG452400 Rh7DG234000 Rh7DG234100
rosa_wichuraiana Rw2G019410 Rw5G042140 Rw7G019590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 171, 358
AccBSI CCGCTC 1 cut(s) 136
AccIII TCCGGA 1 cut(s) 664
AciI CCGC 4 cut(s) 53, 134, 404, 421
AclWI GGATC 1 cut(s) 171
AcoI YGGCCR 1 cut(s) 131
AcyI GRCGYC 1 cut(s) 172
AfaI GTAC 3 cut(s) 195, 461, 588
AfiI CCNNNNNNNGG 2 cut(s) 234, 335
AgeI ACCGGT 1 cut(s) 691
AgsI TTSAA 3 cut(s) 218, 532, 602
AjnI CCWGG 2 cut(s) 128, 269
AluBI AGCT 1 cut(s) 300
AluI AGCT 1 cut(s) 300
AlwI GGATC 1 cut(s) 171
Aor13HI TCCGGA 1 cut(s) 664
AoxI GGCC 3 cut(s) 131, 290, 652
ApeKI GCWGC 2 cut(s) 35, 100
AsiGI ACCGGT 1 cut(s) 691
Asp700I GAANNNNTTC 1 cut(s) 536
AspLEI GCGC 3 cut(s) 100, 105, 174
AspS9I GGNCC 4 cut(s) 225, 290, 370, 653
AsuHPI GGTGA 1 cut(s) 130
AsuII TTCGAA 1 cut(s) 259
AvaII GGWCC 2 cut(s) 225, 370
BanI GGYRCC 2 cut(s) 171, 358
BbvI GCAGC 2 cut(s) 22, 112
BccI CCATC 5 cut(s) 277, 329, 467, 533, 685
BceAI ACGGC 2 cut(s) 277, 313
BciT130I CCWGG 2 cut(s) 130, 271
BfmI CTRYAG 1 cut(s) 323
BfoI RGCGCY 1 cut(s) 175
BglI GCCNNNNNGGC 1 cut(s) 449
BisI GCNGC 4 cut(s) 36, 101, 134, 404
BlsI GCNGC 4 cut(s) 37, 102, 135, 405
BmcAI AGTACT 1 cut(s) 461
Bme1390I CCNGG 2 cut(s) 130, 271
Bme18I GGWCC 2 cut(s) 225, 370
BmgT120I GGNCC 4 cut(s) 225, 290, 370, 653
BmiI GGNNCC 4 cut(s) 173, 227, 360, 655
BmrFI CCNGG 2 cut(s) 130, 271
BmsI GCATC 2 cut(s) 354, 478
BpmI CTGGAG 1 cut(s) 253
Bpu14I TTCGAA 1 cut(s) 259
BsaHI GRCGYC 1 cut(s) 172
BsaJI CCNNGG 3 cut(s) 159, 293, 444
BsaWI WCCGGW 2 cut(s) 664, 691
Bsc4I CCNNNNNNNGG 2 cut(s) 234, 335
Bse118I RCCGGY 2 cut(s) 406, 691
Bse3DI GCAATG 1 cut(s) 429
BseAI TCCGGA 1 cut(s) 664
BseBI CCWGG 2 cut(s) 130, 271
BseDI CCNNGG 3 cut(s) 159, 293, 444
BseLI CCNNNNNNNGG 2 cut(s) 234, 335
BseMI GCAATG 1 cut(s) 429
BseMII CTCAG 2 cut(s) 125, 158
BseRI GAGGAG 2 cut(s) 108, 113
BseXI GCAGC 2 cut(s) 22, 112
Bsh1285I CGRYCG 1 cut(s) 159
BshFI GGCC 3 cut(s) 133, 292, 654
BshNI GGYRCC 2 cut(s) 171, 358
BshTI ACCGGT 1 cut(s) 691
BsiEI CGRYCG 1 cut(s) 159
BsiSI CCGG 4 cut(s) 181, 407, 665, 692
BslFI GGGAC 1 cut(s) 502
BslI CCNNNNNNNGG 2 cut(s) 234, 335
BsmFI GGGAC 1 cut(s) 502
BsnI GGCC 3 cut(s) 133, 292, 654
Bsp119I TTCGAA 1 cut(s) 259
Bsp13I TCCGGA 1 cut(s) 664
Bsp143I GATC 4 cut(s) 163, 232, 253, 631
BspACI CCGC 4 cut(s) 53, 134, 404, 421
BspANI GGCC 3 cut(s) 133, 292, 654
BspCNI CTCAG 2 cut(s) 124, 159
BspEI TCCGGA 1 cut(s) 664
BspLI GGNNCC 4 cut(s) 173, 227, 360, 655
BspPI GGATC 1 cut(s) 171
BspT104I TTCGAA 1 cut(s) 259
BspT107I GGYRCC 2 cut(s) 171, 358
BsrBI CCGCTC 1 cut(s) 136
BsrDI GCAATG 1 cut(s) 429
BsrFI RCCGGY 2 cut(s) 406, 691
BssAI RCCGGY 2 cut(s) 406, 691
BssECI CCNNGG 3 cut(s) 159, 293, 444
BssMI GATC 4 cut(s) 163, 232, 253, 631
BssNI GRCGYC 1 cut(s) 172
Bst2UI CCWGG 2 cut(s) 130, 271
Bst4CI ACNGT 3 cut(s) 160, 308, 348
BstACI GRCGYC 1 cut(s) 172
BstAPI GCANNNNNTGC 1 cut(s) 358
BstBI TTCGAA 1 cut(s) 259
BstC8I GCNNGC 1 cut(s) 408
BstDEI CTNAG 2 cut(s) 111, 167
BstDSI CCRYGG 2 cut(s) 159, 293
BstH2I RGCGCY 1 cut(s) 175
BstHHI GCGC 3 cut(s) 100, 105, 174
BstKTI GATC 4 cut(s) 166, 235, 256, 634
BstMBI GATC 4 cut(s) 163, 232, 253, 631
BstMCI CGRYCG 1 cut(s) 159
BstMWI GCNNNNNNNGC 4 cut(s) 44, 358, 440, 449
BstNI CCWGG 2 cut(s) 130, 271
BstNSI RCATGY 2 cut(s) 85, 403
BstSCI CCNGG 2 cut(s) 128, 269
BstSFI CTRYAG 1 cut(s) 323
BstV1I GCAGC 2 cut(s) 22, 112
BstX2I RGATCY 1 cut(s) 163
BstYI RGATCY 1 cut(s) 163
BsuRI GGCC 3 cut(s) 133, 292, 654
BtgI CCRYGG 2 cut(s) 159, 293
Cac8I GCNNGC 1 cut(s) 408
CfoI GCGC 3 cut(s) 100, 105, 174
Cfr10I RCCGGY 2 cut(s) 406, 691
Cfr13I GGNCC 4 cut(s) 225, 290, 370, 653
CseI GACGC 1 cut(s) 27
Csp6I GTAC 3 cut(s) 194, 460, 587
CspAI ACCGGT 1 cut(s) 691
CviAII CATG 5 cut(s) 19, 82, 400, 512, 644
CviJI RGCY 6 cut(s) 133, 292, 300, 328, 452, 654
CviKI_1 RGCY 6 cut(s) 133, 292, 300, 328, 452, 654
CviQI GTAC 3 cut(s) 194, 460, 587
DdeI CTNAG 2 cut(s) 111, 167
DinI GGCGCC 1 cut(s) 173
DpnI GATC 4 cut(s) 165, 234, 255, 633
DpnII GATC 4 cut(s) 163, 232, 253, 631
EaeI YGGCCR 1 cut(s) 131
Eco32I GATATC 1 cut(s) 625
Eco47I GGWCC 2 cut(s) 225, 370
EcoO109I RGGNCCY 2 cut(s) 225, 653
EcoRII CCWGG 2 cut(s) 128, 269
EcoRV GATATC 1 cut(s) 625
EgeI GGCGCC 1 cut(s) 173
EheI GGCGCC 1 cut(s) 173
FaeI CATG 5 cut(s) 22, 85, 403, 515, 647
FaqI GGGAC 1 cut(s) 502
FatI CATG 5 cut(s) 18, 81, 399, 511, 643
FauI CCCGC 1 cut(s) 46
Fnu4HI GCNGC 4 cut(s) 36, 101, 134, 404
Fsp4HI GCNGC 4 cut(s) 36, 101, 134, 404
GlaI GCGC 3 cut(s) 99, 104, 173
GluI GCNGC 4 cut(s) 36, 101, 134, 404
GsuI CTGGAG 1 cut(s) 253
HaeII RGCGCY 1 cut(s) 175
HaeIII GGCC 3 cut(s) 133, 292, 654
HapII CCGG 4 cut(s) 181, 407, 665, 692
HgaI GACGC 1 cut(s) 27
HhaI GCGC 3 cut(s) 100, 105, 174
Hin1I GRCGYC 1 cut(s) 172
Hin1II CATG 5 cut(s) 22, 85, 403, 515, 647
Hin6I GCGC 3 cut(s) 98, 103, 172
HinP1I GCGC 3 cut(s) 98, 103, 172
HinfI GANTC 3 cut(s) 14, 266, 502
HpaII CCGG 4 cut(s) 181, 407, 665, 692
HphI GGTGA 1 cut(s) 130
Hpy166II GTNNAC 2 cut(s) 70, 589
Hpy188I TCNGA 2 cut(s) 168, 546
Hpy188III TCNNGA 2 cut(s) 529, 665
Hpy8I GTNNAC 2 cut(s) 70, 589
Hpy99I CGWCG 2 cut(s) 154, 157
HpyAV CCTTC 1 cut(s) 268
HpyCH4III ACNGT 3 cut(s) 160, 308, 348
HpyCH4V TGCA 3 cut(s) 344, 352, 660
HpyF10VI GCNNNNNNNGC 4 cut(s) 44, 358, 440, 449
HpyF3I CTNAG 2 cut(s) 111, 167
Hsp92I GRCGYC 1 cut(s) 172
Hsp92II CATG 5 cut(s) 22, 85, 403, 515, 647
HspAI GCGC 3 cut(s) 98, 103, 172
KasI GGCGCC 1 cut(s) 171
Kpn2I TCCGGA 1 cut(s) 664
KroI GCCGGC 1 cut(s) 406
KroNI GCCGGC 1 cut(s) 408
Kzo9I GATC 4 cut(s) 163, 232, 253, 631
LmnI GCTCC 2 cut(s) 95, 297
Lsp1109I GCAGC 2 cut(s) 22, 112
LweI GCATC 2 cut(s) 354, 478
MaeIII GTNAC 1 cut(s) 39
MalI GATC 4 cut(s) 165, 234, 255, 633
MbiI CCGCTC 1 cut(s) 136
MboI GATC 4 cut(s) 163, 232, 253, 631
MboII GAAGA 2 cut(s) 248, 559
MflI RGATCY 1 cut(s) 163
MluCI AATT 2 cut(s) 479, 605
Mly113I GGCGCC 1 cut(s) 172
MlyI GAGTC 1 cut(s) 260
MnlI CCTC 9 cut(s) 86, 118, 131, 134, 162, 216, 281, 454, 577
MreI CGCCGGCG 1 cut(s) 406
MroI TCCGGA 1 cut(s) 664
MroNI GCCGGC 1 cut(s) 406
MroXI GAANNNNTTC 1 cut(s) 536
MseI TTAA 1 cut(s) 303
MspA1I CMGCKG 1 cut(s) 421
MspI CCGG 4 cut(s) 181, 407, 665, 692
MspR9I CCNGG 2 cut(s) 130, 271
MteI GCGCNGCGC 1 cut(s) 101
MvaI CCWGG 2 cut(s) 130, 271
MwoI GCNNNNNNNGC 4 cut(s) 44, 358, 440, 449
NaeI GCCGGC 1 cut(s) 408
NarI GGCGCC 1 cut(s) 172
NdeII GATC 4 cut(s) 163, 232, 253, 631
NgoMIV GCCGGC 1 cut(s) 406
NlaIII CATG 5 cut(s) 22, 85, 403, 515, 647
NlaIV GGNNCC 4 cut(s) 173, 227, 360, 655
NmuCI GTSAC 1 cut(s) 39
NspI RCATGY 2 cut(s) 85, 403
NspV TTCGAA 1 cut(s) 259
PdiI GCCGGC 1 cut(s) 408
PdmI GAANNNNTTC 1 cut(s) 536
PfeI GAWTC 2 cut(s) 14, 502
PfoI TCCNGGA 1 cut(s) 269
PinAI ACCGGT 1 cut(s) 691
PkrI GCNGC 4 cut(s) 37, 102, 135, 405
PleI GAGTC 1 cut(s) 260
PluTI GGCGCC 1 cut(s) 175
PpsI GAGTC 1 cut(s) 260
PpuMI RGGWCCY 1 cut(s) 225
Psp5II RGGWCCY 1 cut(s) 225
Psp6I CCWGG 2 cut(s) 128, 269
PspGI CCWGG 2 cut(s) 128, 269
PspN4I GGNNCC 4 cut(s) 173, 227, 360, 655
PspPI GGNCC 4 cut(s) 225, 290, 370, 653
PspPPI RGGWCCY 1 cut(s) 225
PsuI RGATCY 1 cut(s) 163
RsaI GTAC 3 cut(s) 195, 461, 588
RsaNI GTAC 3 cut(s) 194, 460, 587
SaqAI TTAA 1 cut(s) 303
SatI GCNGC 4 cut(s) 36, 101, 134, 404
Sau3AI GATC 4 cut(s) 163, 232, 253, 631
Sau96I GGNCC 4 cut(s) 225, 290, 370, 653
ScaI AGTACT 1 cut(s) 461
SchI GAGTC 1 cut(s) 260
ScrFI CCNGG 2 cut(s) 130, 271
SetI ASST 8 cut(s) 110, 123, 208, 279, 302, 375, 538, 588
SfaNI GCATC 2 cut(s) 354, 478
SfcI CTRYAG 1 cut(s) 323
SfoI GGCGCC 1 cut(s) 173
SfuI TTCGAA 1 cut(s) 259
SgrAI CRCCGGYG 1 cut(s) 406
SinI GGWCC 2 cut(s) 225, 370
Sse9I AATT 2 cut(s) 479, 605
SsiI CCGC 4 cut(s) 53, 134, 404, 421
SspDI GGCGCC 1 cut(s) 171
StyD4I CCNGG 2 cut(s) 128, 269
TaaI ACNGT 3 cut(s) 160, 308, 348
TaqI TCGA 1 cut(s) 259
TasI AATT 2 cut(s) 479, 605
TatI WGTACW 1 cut(s) 459
TauI GCSGC 2 cut(s) 136, 406
TfiI GAWTC 2 cut(s) 14, 502
Tru1I TTAA 1 cut(s) 303
Tru9I TTAA 1 cut(s) 303
TseFI GTSAC 1 cut(s) 39
TseI GCWGC 2 cut(s) 35, 100
Tsp45I GTSAC 1 cut(s) 39
TspDTI ATGAA 3 cut(s) 429, 500, 660
VpaK11BI GGWCC 2 cut(s) 225, 370
XceI RCATGY 2 cut(s) 85, 403
XmnI GAANNNNTTC 1 cut(s) 536
ZrmI AGTACT 1 cut(s) 461
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.